AMCG00013129 (LOC107756562,LOC108433489,LOC107570719,LOC107695698)


Basic Information

Item Value
gene id AMCG00013129
gene name LOC107756562,LOC108433489,LOC107570719,LOC107695698
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 21551172 ~ 21585017 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013129
ATGGCGACTCCCAGCCCCAGCACCAACTCCACCACCTCTTccagcaacaacagcaataacGCAGGATCTACATCCACATCCCACCACCACCAGTCCCAATCTCAACACATAACGACAGTCAGCAGCATGCAGGgtAAACGCAAAGCACTGAAGTTAAATTTTGCCAATCCTCCAATTAAAACACCTCAACCAAGAATTTCTTTCACCCCCCCGGGAGCTCCTTTTCAGAACCCACATATAGAGAGGCTGCGCACGCACAGTATTGAATCTTCAGGCAAGTTGAAGATCTCTCCAGAGCAACACTGGGATTTTACAGCAGAAGACCTCAAGGACCTTGGGGAAATTGGACGTGGTGCCTATGGATCTGTAAACAAAATGGTGCACAAGCCAAGCGGAAAGATAATGGCCGTAAAAAGGATTCGATCAACCGTTGATGAAAAGGAACAGAAGCAGCTGCTAATGGATTTAGATGTAGTGATGAGGAGTAGTGATTGTCCATATATTGTTCAGTTTTATGGGGCTCTTTTCAGAGAGactgTGAAAGCACTTAACCACTTAAAAGAAAACTTGAAAATAATTCACAGAGACATCAAACCTTCCAATATTCTCCTGGACAGGAACGGCAACATTAAGCTCTGTGATTTTGGCATTAGTGGACAGCTTGTGGACTCCATTGCCAAAACTAGAGACGCAGGATGCAGACCTTACATGGCGCCAGAAAGAATAGACCCCAGTGCTTCCAGACAAGGTTATGATGTGCGGTCAGATGTGTGGAGTTTGGGAATCACATTGTACGAGCTGGCCACTGGGCGATTCCCCTATCCAAAGTGGAACAGTGTATTTGATCAGTTGACACAGGTTGTCAAGGGAGACCCACCGCAGCTCAGTAACTCGGAGGACAGGCAATTTTCCCCCAAATTTATCAATTTTGTCAATCTGTGCCTTACAAAGGACGAGTCAAAAAGGCCAAAGTACAAAGAGCTCCTGAAACACCCATTCATCCTGATGTACGAGGAGCGCTCCGTAGACGTGGCCACGTACGTGTGCCGGATCCTGGATCAGATGCCCACCTCCCCCAGCTCCCCCATGTATGTGGATTGATGTTGCATTAGAAGAGCTGCGGAGGGTGACCCTGAAAAATATCCCATGGTGTAAAGATTTGTTTCATCAATATTGcagtgtttaaaagaaaaagaaaaaaaatcccgaAACACCATGTGCAATAAGATTGGTGTTCATTTCAATCACATCTGTAAAATAttgtcacatatatatatatatcagttacTAAAATGCGGATATCCATctttctgtctatctatctatttagcTTCGCATTTTAGTAACTGATCACACCGTGGTAAAGTCTTGGTTTTGACAAGAGACCTCATCTTGATCTTATGTGGACACAGTATAGTCATAAAATCTGGAATTATATTCATAGTATTTTggaagaaattatatataattatcactTGTGGAATTTAATGTAGAGACCTTTAAAACAGCTTACTGGAAACATGTTCTGTGTGAGCCTTCCATTTCTACCCTGTGTATGATTTTGCGCATTGCGTGTGTCACTGTTTAAAGAGGAAGCTTCAAGGGGtaacaaccaaacaaaaggAGCGTACATCAGTGGACAGGATGGTCATTCACCTGTAACCCACCAGGTCATGCCAGGAGGAGGGTGTTCTTCACTGTGCAATAGGtgtgctgatttaaaaaaaaaaaaaaacctgctttCACAAGCTCATAGTTATTATCATGGGACTCTTTTCggttttattttgtggatttaagaaattaaagcGAAGgatatatagatatctatatctatatatctttttattttttgtgagtgtatctatatatatatatgtgtgtgtgtgtgtatgtatgtatgtatgaatgtgtctg

Function

NR:

description
PREDICTED: dual specificity mitogen-activated protein kinase kinase 4 isoform X2

GO: NA

KEGG:

id description
K04430 MAP2K4, MKK4; mitogen-activated protein kinase kinase 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013129 True 1917 mRNA 0.42 10 21551172 21585017

Neighbor

gene id symbol gene type direction distance location
AMCG00013127 NA coding upstream 4116 21545619 ~ 21547056 (+)
AMCG00013125 LOC108412647 coding upstream 64479 21486231 ~ 21486693 (+)
AMCG00013142 LOC108412647 coding upstream 64494 21486231 ~ 21486678 (+)
AMCG00013120 myhz1.2,myhz1.1,myhc4 coding upstream 69892 21475618 ~ 21481280 (+)
AMCG00013140 wu:fd14a01 coding upstream 69892 21476260 ~ 21481280 (+)
AMCG00013146 dnah9 coding downstream 188225 21773242 ~ 21911741 (+)
AMCG00013148 NA coding downstream 345038 21930055 ~ 22228496 (+)
AMCG00013149 foxk2,LOC107719587,LOC106601484 coding downstream 691325 22276342 ~ 22292501 (+)
AMCG00013152 NA coding downstream 794218 22379235 ~ 22470187 (+)
AMCG00013154 NA coding downstream 912376 22497393 ~ 22498928 (+)
G42345 LOC777982,LOC104957706 non-coding upstream 42348 21472716 ~ 21508824 (+)
G42347 NA non-coding upstream 47248 21498973 ~ 21503924 (+)
G42331 LOC100710639,LOC102784652,LOC102295130,LOC102192639,LOC101477534,LOC108412652 non-coding upstream 139183 21364104 ~ 21411989 (+)
G42330 LOC106589491,LOC105023009,LOC103368359,LOC100710639,LOC102784652,LOC102295130 non-coding upstream 246959 21256585 ~ 21304213 (+)
G42277 NA non-coding upstream 660840 20889675 ~ 20890332 (+)
G42448 NA non-coding downstream 563277 22148294 ~ 22148513 (+)
G42449 NA non-coding downstream 564568 22149585 ~ 22149787 (+)
G42459 NA non-coding downstream 681340 22266357 ~ 22266636 (+)
G42464 wdr45b non-coding downstream 715556 22300573 ~ 22304742 (+)
G42488 NA non-coding downstream 929847 22514864 ~ 22570081 (+)
G42344 LOC108412647 other upstream 64364 21426660 ~ 21486808 (+)
AMCG00013118 LOC106594791 other upstream 79612 21286031 ~ 21471560 (+)
AMCG00013126 myhb,LOC108443910 other upstream 129856 21370843 ~ 21421316 (+)
G42326 LOC105030495,LOC106938339,LOC103143718,LOC103461378 other upstream 272444 21269675 ~ 21278728 (+)
G41978 NA other upstream 2521894 19025561 ~ 19029278 (+)
G42453 NA other downstream 657412 22242429 ~ 22245790 (+)
AMCG00013147 NA other downstream 663480 22248497 ~ 22260816 (+)
AMCG00013198 NA other downstream 2656252 24241269 ~ 24331854 (+)
G42846 NA other downstream 3162475 24747492 ~ 24749395 (+)
G42858 NA other downstream 3183407 24768424 ~ 24770148 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G476607 NA unknown CI01000332 null 64315 ~ 68121 (-)