AMCG00013135 (LOC107091756,LOC107691241,LOC106606941,LOC106601503,LOC105910937,LOC107559522)


Basic Information

Item Value
gene id AMCG00013135
gene name LOC107091756,LOC107691241,LOC106606941,LOC106601503,LOC105910937,LOC107559522
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 21541433 ~ 21544389 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013135
ATGTTGCGTACGCCGTGTTTGTACCCAGAAATTGGTGagggtatttgtatttgtgatgaACAGGTCAGGtcctccacccccaccctgtGCAGTACAGGGCCACACTCCGCACAGCATCATGGGGCTCGGTGTCTCTCCTCATTGCGCCCGCCACCTCCATCTGGAGACAAGACGAGCAAGTCTGGGCCTGTGACATGGAAATCTTTGGCTTTGACATTTGCAATTGGTGGCACAATTCTGGCAGGAATGAAAtacttcaaaaaagaaaaagaagaaataATTGAACAGAAAAGGACAAAGTCTTTGGGGAAGGCTGCTCTGGGAGGTCCCTTCTCTCTCGTTGACCACAACAATCAGCCAAAGAAAAGTGAAGATTTCTTGGGCCAGTGGATTCTCATCTACTTTGGCTTCACCCACTGCCCTGACATCTGTCCCGACGAGCTGGAGAAAATGATTGAAGCAGTGGATGAGATAGacaGAATACCTTCGCTTCCAAATGTAACTCCCCTGTTCGTCACCATTGACCCAGACAGGGATACCCCAGAGGCCATATCAAGATACGTAAAGGAGTTTTCTCCAAAGCTGATTGGATTGACTGGGACAACTGAACAAGTGGATGCAGTGTCCAGAGTTTACAGAGTATatcacagtcaagggccgaAAGACGAAGACAATGATTACATTgTGGACCACACAATAATCATGTATCTGGTGGACCCTGATGGGGAATTTGTGGAATATTATGGGCAGAACAAGAGAAGTGCAGAAATTGCAACTTCAATAGCTTCATATATGAGACAATATAAACAGAAGAAATAGGCTGTTCTCTCTCAAGTCGCATAATCATGCACATATATCCCCCTTACTCCCAACTCCATGTAGGCTGGTTTGTCAACTTCCTTAACCTAAAAACACTGATTGGGGGGGCATGTGCTTTTTGAAAGAAGGTTAATATTCCAGTTTGAACAATTTCCACATCTCAAATGCCATtcacaatacattatttcctgtcttacaaaaaggaaataaattatgGAACAATTA

Function

NR:

description
PREDICTED: protein SCO1 homolog, mitochondrial

GO: NA

KEGG:

id description
K07152 SCO1; protein SCO1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013135 True 1044 mRNA 0.44 6 21541433 21544389

Neighbor

gene id symbol gene type direction distance location
AMCG00013143 NA coding downstream 9809 21529413 ~ 21531624 (-)
AMCG00013139 NA coding downstream 12387 21527273 ~ 21529046 (-)
AMCG00013134 LOC105910910,LOC107723326,LOC103366176,LOC108412647,LOC100705928 coding downstream 48452 21488281 ~ 21492981 (-)
AMCG00013132 myhz1.1,ns:zf-e68,myhz1.2,myhz2,myhc4 coding downstream 67065 21469029 ~ 21474368 (-)
AMCG00013136 LOC107571695,LOC108418072 coding downstream 86538 21452032 ~ 21454895 (-)
AMCG00013141 NA coding upstream 1651 21546040 ~ 21549726 (-)
AMCG00013130 NA coding upstream 51686 21596075 ~ 21627396 (-)
AMCG00013144 NA coding upstream 380213 21924602 ~ 21935718 (-)
AMCG00013145 LOC108424875 coding upstream 479587 22023976 ~ 22039234 (-)
AMCG00013150 wdr45b,LOC107598578 coding upstream 748939 22293328 ~ 22312757 (-)
G42382 NA non-coding downstream 113717 21340970 ~ 21427716 (-)
G42386 NA non-coding downstream 141275 21399644 ~ 21400158 (-)
G42383 NA non-coding downstream 194599 21346475 ~ 21346834 (-)
G42372 LOC105910910,LOC103366176,LOC777984,LOC100705928 non-coding downstream 231085 21287320 ~ 21310348 (-)
G42378 LOC106596905,LOC106577420,LOC106569812 non-coding downstream 331784 21209265 ~ 21209649 (-)
G42440 dnah9 non-coding upstream 349235 21893624 ~ 21905597 (-)
G42450 NA non-coding upstream 605192 22149581 ~ 22149792 (-)
G42544 NA non-coding upstream 1030169 22574558 ~ 22574827 (-)
G42553 NA non-coding upstream 1161677 22706066 ~ 22706337 (-)
G42557 NA non-coding upstream 1271767 22816156 ~ 22816369 (-)
AMCG00013133 wu:fd14a01,LOC101068441,LOC101079795,LOC103368359,LOC107721187 other downstream 14601 21503849 ~ 21526832 (-)
AMCG00013131 LOC101068441,LOC106598369,LOC106594844,LOC106593081,LOC106593408,LOC104955241 other downstream 91479 21448329 ~ 21449954 (-)
AMCG00013137 myhm86-1,LOC107373462,LOC107574740,LOC103143810,LOC108243721,LOC106527115,LOC101079795,LOC108261476,LOC101068441,LOC101071797,LOC101163414 other downstream 119315 21411939 ~ 21422118 (-)
G42381 LOC102793686,LOC103366176,LOC105910910 other downstream 165670 21337067 ~ 21375763 (-)
AMCG00013184 prkar1a,LOC107708993,LOC106606198 other upstream 2282220 23826609 ~ 23839146 (-)
G42749 NA other upstream 2299694 23844083 ~ 23847477 (-)
AMCG00013204 mafg,LOC108241257,LOC106533856 other upstream 3335252 24879641 ~ 24902428 (-)
AMCG00013216 NA other upstream 3481349 25025738 ~ 25029004 (-)
G43001 NA other upstream 3531004 25075393 ~ 25078244 (-)

Expression


Co-expression Network