AMCG00013136 (LOC107571695,LOC108418072)



Basic Information


Item Value
gene id AMCG00013136
gene name LOC107571695,LOC108418072
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 21452032 ~ 21454895 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>AMCG00013136
aCTTGCTGGAGAAGTCCAGAGTAACATTCCAGCTGTCTGATGAAAGGAGCTACCACATCTTTTATCAGATCATGACCAACCACAAGCCTGAGCTCATTGACATGCTTCTGATCACAACCAACCCCTATGATTTCCCTATGATCAGCCAGGGTCAGATCACTGTGGCCAGCATTGATGACAAAGAGGAGTTGGTTGCCACAGATACTGCCATTGATATTCTGGGCTTTACTAACGATGAGAAAATGGGCATCTACAAGCTGACTGGTGCTGTGATGCACTACGGTAACATGAAGTTCAAGCAGAAGCAACGTGAGGAGCAGGCTGAACCTGACGGCACAGAGGTTGGTGCCCTGTCCAAATCAGTCTATGAGAAATTGTTCTTGTGGATGGTTGTCCGCATTAACCAGATGCTGGACACCAAGCAGCCCAGACAGTTCTTCATTGGGGTGCTGGATATTGCTGGATTTGAGATCTTC

Function


NR:

description
PREDICTED: myosin heavy chain, fast skeletal muscle-like, partial

GO:

id name namespace
GO:0014823 response to activity biological_process
GO:0000166 nucleotide binding molecular_function

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
AMCG00013136 True 476 mRNA 0.47 4 21452032 21454895

Neighbor


gene id symbol gene type direction distance location
AMCG00013138 LOC103399676,LOC107571695 coding downstream 53777 21394276 ~ 21398255 (-)
AMCG00013115 LOC108412647,LOC100705928,LOC102793686,LOC105910910 coding downstream 76868 21351263 ~ 21375164 (-)
AMCG00013116 ns:zf-e68,LOC106569812,LOC108254801,LOC108261476,LOC108261437,LOC106569813 coding downstream 101218 21350459 ~ 21350814 (-)
AMCG00013110 LOC100705928,LOC102793686,LOC101481850,LOC100710639,LOC102197206,LOC102288653,LOC106589491 coding downstream 113949 21336157 ~ 21338083 (-)
AMCG00013113 myhz1.1,ns:zf-e68,myhz1.2,LOC108444092,LOC105902796,LOC108254796,LOC108443910,LOC103370565 coding downstream 116901 21328200 ~ 21335131 (-)
AMCG00013132 myhz1.1,ns:zf-e68,myhz1.2,myhz2,myhc4 coding upstream 14134 21469029 ~ 21474368 (-)
AMCG00013134 LOC105910910,LOC107723326,LOC103366176,LOC108412647,LOC100705928 coding upstream 33386 21488281 ~ 21492981 (-)
AMCG00013139 NA coding upstream 72378 21527273 ~ 21529046 (-)
AMCG00013143 NA coding upstream 74518 21529413 ~ 21531624 (-)
AMCG00013135 LOC107091756,LOC107691241,LOC106606941,LOC106601503,LOC105910937,LOC107559522 coding upstream 86538 21541433 ~ 21544389 (-)
G42382 NA non-coding downstream 24316 21340970 ~ 21427716 (-)
G42386 NA non-coding downstream 51874 21399644 ~ 21400158 (-)
G42383 NA non-coding downstream 105198 21346475 ~ 21346834 (-)
G42372 LOC105910910,LOC103366176,LOC777984,LOC100705928 non-coding downstream 141684 21287320 ~ 21310348 (-)
G42378 LOC106596905,LOC106577420,LOC106569812 non-coding downstream 242383 21209265 ~ 21209649 (-)
G42440 dnah9 non-coding upstream 438729 21893624 ~ 21905597 (-)
G42450 NA non-coding upstream 694686 22149581 ~ 22149792 (-)
G42544 NA non-coding upstream 1119663 22574558 ~ 22574827 (-)
G42553 NA non-coding upstream 1251171 22706066 ~ 22706337 (-)
G42557 NA non-coding upstream 1361261 22816156 ~ 22816369 (-)
AMCG00013131 LOC101068441,LOC106598369,LOC106594844,LOC106593081,LOC106593408,LOC104955241 other downstream 2078 21448329 ~ 21449954 (-)
AMCG00013137 myhm86-1,LOC107373462,LOC107574740,LOC103143810,LOC108243721,LOC106527115,LOC101079795,LOC108261476,LOC101068441,LOC101071797,LOC101163414 other downstream 29914 21411939 ~ 21422118 (-)
G42381 LOC102793686,LOC103366176,LOC105910910 other downstream 76269 21337067 ~ 21375763 (-)
G42375 LOC108261476,LOC105030495,LOC108261437,LOC108254801,LOC108254800,LOC108417520 other downstream 91925 21350660 ~ 21360107 (-)
AMCG00013112 myhb,LOC106527115,LOC107667337,LOC107721187,LOC108440470 other downstream 140726 21300093 ~ 21311306 (-)
AMCG00013133 wu:fd14a01,LOC101068441,LOC101079795,LOC103368359,LOC107721187 other upstream 48954 21503849 ~ 21526832 (-)
AMCG00013184 prkar1a,LOC107708993,LOC106606198 other upstream 2371714 23826609 ~ 23839146 (-)
G42749 NA other upstream 2389188 23844083 ~ 23847477 (-)
AMCG00013204 mafg,LOC108241257,LOC106533856 other upstream 3424746 24879641 ~ 24902428 (-)
AMCG00013216 NA other upstream 3570843 25025738 ~ 25029004 (-)

Expression



Co-expression Network