AMCG00013138 (LOC103399676,LOC107571695)


Basic Information

Item Value
gene id AMCG00013138
gene name LOC103399676,LOC107571695
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 21394276 ~ 21398255 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013138
ATGCTTCTGATCACAACCAATCCCTATGATTTCCCTATGATCAGCCAGGGTCAGATCACTGTGGCCAGCATAGATGACAAAGAGGAGCTGGTTGCCACAGATACAGCCATTGATATTCTGGGCTTCACTAATGATGAGAAAATGGGCATCTACAAGCTGACTGGTGCTGTGATGCACTATGGTAACATGAAGTTCAAGCAGAAGCAACGTGAGGAGCAGGCTGAACCTGACGGCACTGAGGTCTATGAGAAATTGTTCTTGTGGATGGTTGTCCGCATAAACCAGATGCTGGATACCAAGCAGTCCAGACAGAGCTACATTGGGGTGCTGGATATTGCTGGATTCGAGATCTTTGATGTGTTCTTTAAAGCTGGTCTGCTGGGTACCCTTGAGGAGATGCGAGATGAAAAACTGGCCGCACTCATCACTAACACGCAGGCTCTTTGCCGTGGCTTTCTCATGAGAAGGGAATTTGTGAAGATGATGGAAAGGAGGTAA

Function

NR:

description
PREDICTED: myosin-2-like

GO:

id name namespace
GO:0001757 somite specification biological_process
GO:0005488 binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013138 True 498 mRNA 0.47 4 21394276 21398255

Neighbor

gene id symbol gene type direction distance location
AMCG00013115 LOC108412647,LOC100705928,LOC102793686,LOC105910910 coding downstream 19112 21351263 ~ 21375164 (-)
AMCG00013116 ns:zf-e68,LOC106569812,LOC108254801,LOC108261476,LOC108261437,LOC106569813 coding downstream 43462 21350459 ~ 21350814 (-)
AMCG00013110 LOC100705928,LOC102793686,LOC101481850,LOC100710639,LOC102197206,LOC102288653,LOC106589491 coding downstream 56193 21336157 ~ 21338083 (-)
AMCG00013113 myhz1.1,ns:zf-e68,myhz1.2,LOC108444092,LOC105902796,LOC108254796,LOC108443910,LOC103370565 coding downstream 59145 21328200 ~ 21335131 (-)
AMCG00013111 LOC100705928,LOC100710639,LOC102793686,LOC101481850,LOC108254796,LOC106589491,LOC102288653 coding downstream 105207 21287146 ~ 21289069 (-)
AMCG00013136 LOC107571695,LOC108418072 coding upstream 53777 21452032 ~ 21454895 (-)
AMCG00013132 myhz1.1,ns:zf-e68,myhz1.2,myhz2,myhc4 coding upstream 70774 21469029 ~ 21474368 (-)
AMCG00013134 LOC105910910,LOC107723326,LOC103366176,LOC108412647,LOC100705928 coding upstream 90026 21488281 ~ 21492981 (-)
AMCG00013139 NA coding upstream 129018 21527273 ~ 21529046 (-)
AMCG00013143 NA coding upstream 131158 21529413 ~ 21531624 (-)
G42383 NA non-coding downstream 47442 21346475 ~ 21346834 (-)
G42372 LOC105910910,LOC103366176,LOC777984,LOC100705928 non-coding downstream 83928 21287320 ~ 21310348 (-)
G42378 LOC106596905,LOC106577420,LOC106569812 non-coding downstream 184627 21209265 ~ 21209649 (-)
G42376 myhz1.2,myhz1.1,LOC108415768,LOC102780693,LOC105899468 non-coding downstream 198926 21194149 ~ 21195350 (-)
G42278 NA non-coding downstream 503988 20889683 ~ 20890288 (-)
G42386 NA non-coding upstream 1389 21399644 ~ 21400158 (-)
G42440 dnah9 non-coding upstream 495369 21893624 ~ 21905597 (-)
G42450 NA non-coding upstream 751326 22149581 ~ 22149792 (-)
G42544 NA non-coding upstream 1176303 22574558 ~ 22574827 (-)
G42553 NA non-coding upstream 1307811 22706066 ~ 22706337 (-)
G42381 LOC102793686,LOC103366176,LOC105910910 other downstream 18513 21337067 ~ 21375763 (-)
G42375 LOC108261476,LOC105030495,LOC108261437,LOC108254801,LOC108254800,LOC108417520 other downstream 34169 21350660 ~ 21360107 (-)
AMCG00013112 myhb,LOC106527115,LOC107667337,LOC107721187,LOC108440470 other downstream 82970 21300093 ~ 21311306 (-)
G42366 myhz2,LOC106598369,LOC104955241 other downstream 92855 21252107 ~ 21301421 (-)
AMCG00013090 NA other downstream 848465 20531194 ~ 20545811 (-)
AMCG00013137 myhm86-1,LOC107373462,LOC107574740,LOC103143810,LOC108243721,LOC106527115,LOC101079795,LOC108261476,LOC101068441,LOC101071797,LOC101163414 other upstream 13684 21411939 ~ 21422118 (-)
AMCG00013131 LOC101068441,LOC106598369,LOC106594844,LOC106593081,LOC106593408,LOC104955241 other upstream 50074 21448329 ~ 21449954 (-)
AMCG00013133 wu:fd14a01,LOC101068441,LOC101079795,LOC103368359,LOC107721187 other upstream 105594 21503849 ~ 21526832 (-)
AMCG00013184 prkar1a,LOC107708993,LOC106606198 other upstream 2428354 23826609 ~ 23839146 (-)
G42749 NA other upstream 2445828 23844083 ~ 23847477 (-)

Expression


Co-expression Network