AMCG00013140 (wu:fd14a01)


Basic Information

Item Value
gene id AMCG00013140
gene name wu:fd14a01
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 21476260 ~ 21481280 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013140
ATGGACCTTGAGAGGGCCAAGAGAAAGCTGGAGGGTGATCTGAAACTATCCCAAGAATCCGTAATGGATctggaaaatgacaaacaacagTCAGAGGAGAAGATCAAGAAGAAGGACTTTGAAACCAGCCAGCTTCTCAGCAAGATTGAGGATGAACAAGCTATGGGTGCTCAGCTGCAGAAGAAGATTAAGGAGCTCCAGGCTCGTATTGAGGAACTGGAAGAGGAAATTGAGGCTGAACGTGCTGCTCGTGCAAAGATTGAGAAGCAGAGGGCAGATCTCTCCAGGGAACTTGAGGAGATCAGTGAAAGGCTTGAAGAGGCTGGTGGTGCCACTTCTGCTCAGATTGAGATGAACAAGAAACGTGAAGCTGAGTTCCAGAAGCTCCGCCGCGACCTTGAAGAGTCGACTCTGCAGCACGAGGCCACCGCTGCTGCCCTCCGCAAGAAGCAGGCCGACAGCGTGGCAGAATTAGGAGAACAGATTGACAACCTTCAGCGTGTCAAGCagaagctggagaaggagaagagtgAATACAAAATGGAGATTGATGATCTTTCTAGCAACATGGAGTCTGTAGCCAAGTCTAAGGCTAATCTGGAGAAGATGTGCCGTACTCTGGAGGACCAACTCAGTGAACTCAAGTCAAAGAGTGATGAGAACACACGCCAGATTAATGACCTCAGTGGTCAAAAAGCACGTCTGCAAACTGAGAATGGTGAATTTGGTCGCCAACTGGAAGAGAAAGAATCTCTGGTATCCCAGCTGACAAGAGGAAAACAGGCCTACACTCAACAAATTGAGGAGCtgaagaggcaaatggaggagGAAACAAAGGCCAAGAATGCCCTGGCTCATGGTTTACAATCAGCCCGCCATGACTGTGACCTGCTCCGGGAGCAATttgaggaggagcaggaggccaAGGCTGAACTTCAGCGTGGAATGTCCAAGGCCAACAGTGAAGTGGCTCAGTGgagaacaaaatatgaaactgaCGCCATCCAGCGCACTGAAGAGCTTGAGGAGGCCAAGAAAAAGCTTGCCCAGCGCCTGCAAGATGCTGAGGAACAAATTGAGGCTATGAACTCTAAGTGCGCCTCTCTGGAAAAGACCAAGCAGAGGCTGCAGGGTGAGGTGGAAGACCTCATGATTGATGTGGAGAGAGCAAACGCTCAGGCTGCCAACCTTGACAAGAAGCAGAGGAACTTTGACAAGATCGGTGAGAGTGGAAAGAGCATTCATGAGCTGGAGAAGGCAAAGAAACAATCTGAGGCAGAAAAGGCTGAAATCCAGACTGCACTGGAGGAAGCTGAGGCATCATTGGAGCATGAGGAGTCCAAGATCCTTCGTGTCCAGTTGGAACTGAACCAGATCAAATCAGAAGTGGACAGAAAGATTGCTGAGAAGGATGAGGAGCTTGAACAGAACAAGAGAAACAACCAGAGAATTGTTGACCAAATGCAGAGCACTCTTGATTCTGAGGTCAGGAGCAGGAATGATGCCCTGAGAGTGAAGAAGAAGATGGAGGGAGATCTCAATGAGATGGAAATCCAGCTCAGCCATGCCAACCGCCAGGCTGCTGAGGCCCAGAAACAACTGAGGAACGTCCAAGGACAACTCAAGgatGCCCAACTGCACCTGGATGATGCTGTCAGAGGACAGGAGGACATGAAGGAACAGGCTGCCATGGTGGAGCGCAGGAACACCCTCATGATGGCTGAGATTGAGGAAATGAGGGCTGCCCTggaacagacagagagaggccgCAAAGTGGCTGAACAGGAACTGGTTGATGCCAGTGAGCGTGTGCAGCTGCTGCACTCCCAGAACACCAGCCTTGTAAACACCAAGAAGAAGCTTGAGACTGACATTGCTCAGCTCCAAGGTGAAGTTGATGACACCATCCAGGAAGCAAGAAATGCAGAAGAAAAGGCCAAGAAGGCTATTACTGATGCTGCCATGATGGCTGAGGAGCTGAAGAAGGAGCAGGACACCAGCTCTCACCTGGAGAGAATGAAGAAGAACCTGGAGGTCACAGTGAAGGACCTGCAGCACCGTCTGGATGAGGCTGAGCAGCTGGCAATGAAGGGTGGAAAGAAGCAGCTCCAGAAACTGGAGTCTAGGGTGCGTGAGCTGGAGAATGAGCTTGAAGCTGAACAAAGACGTGGAGTTGATGCCATTAAAGGTGTCCGTAAATATGAGAGAAGAGTCAAGGAGCTCTCCTACCAGGGTAAAGATTCCGAAGAGTAG

Function

NR:

description
myosin heavy chain, fast skeletal muscle

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0032982 myosin filament cellular_component
GO:0030016 myofibril cellular_component
GO:0005516 calmodulin binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0003774 motor activity molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013140 True 2253 mRNA 0.50 14 21476260 21481280

Neighbor

gene id symbol gene type direction distance location
AMCG00013124 LOC103370545,LOC102292730,LOC777984,LOC100705928,LOC102793686,LOC100710639,LOC101481850,LOC102288653 coding upstream 27542 21421622 ~ 21448718 (+)
AMCG00013119 LOC106565367,LOC777984 coding upstream 75948 21399406 ~ 21400312 (+)
AMCG00013128 LOC106597527,LOC106569817,LOC106606262,LOC106596646,LOC106585883,LOC106596400 coding upstream 113347 21362315 ~ 21362913 (+)
AMCG00013121 NA coding upstream 116553 21350662 ~ 21359707 (+)
AMCG00013123 NA coding upstream 131197 21343864 ~ 21345063 (+)
AMCG00013142 LOC108412647 coding downstream 4951 21486231 ~ 21486678 (+)
AMCG00013125 LOC108412647 coding downstream 4951 21486231 ~ 21486693 (+)
AMCG00013127 NA coding downstream 64339 21545619 ~ 21547056 (+)
AMCG00013129 LOC107756562,LOC108433489,LOC107570719,LOC107695698 coding downstream 69892 21551172 ~ 21585017 (+)
AMCG00013146 dnah9 coding downstream 291962 21773242 ~ 21911741 (+)
G42331 LOC100710639,LOC102784652,LOC102295130,LOC102192639,LOC101477534,LOC108412652 non-coding upstream 64271 21364104 ~ 21411989 (+)
G42330 LOC106589491,LOC105023009,LOC103368359,LOC100710639,LOC102784652,LOC102295130 non-coding upstream 172047 21256585 ~ 21304213 (+)
G42277 NA non-coding upstream 585928 20889675 ~ 20890332 (+)
G42269 NA non-coding upstream 635700 20839589 ~ 20840560 (+)
G42177 NA non-coding upstream 848926 20627094 ~ 20627334 (+)
G42347 NA non-coding downstream 17693 21498973 ~ 21503924 (+)
G42350 NA non-coding downstream 47501 21528781 ~ 21600968 (+)
G42448 NA non-coding downstream 667014 22148294 ~ 22148513 (+)
G42449 NA non-coding downstream 668305 22149585 ~ 22149787 (+)
G42459 NA non-coding downstream 785077 22266357 ~ 22266636 (+)
AMCG00013118 LOC106594791 other upstream 4700 21286031 ~ 21471560 (+)
AMCG00013126 myhb,LOC108443910 other upstream 54944 21370843 ~ 21421316 (+)
G42326 LOC105030495,LOC106938339,LOC103143718,LOC103461378 other upstream 197532 21269675 ~ 21278728 (+)
G41978 NA other upstream 2446982 19025561 ~ 19029278 (+)
AMCG00013068 NA other upstream 2501898 18967429 ~ 18974362 (+)
G42453 NA other downstream 761149 22242429 ~ 22245790 (+)
AMCG00013147 NA other downstream 767217 22248497 ~ 22260816 (+)
AMCG00013198 NA other downstream 2759989 24241269 ~ 24331854 (+)
G42846 NA other downstream 3266212 24747492 ~ 24749395 (+)
G42858 NA other downstream 3287144 24768424 ~ 24770148 (+)

Expression


Co-expression Network