AMCG00013142 (LOC108412647)


Basic Information

Item Value
gene id AMCG00013142
gene name LOC108412647
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 21486231 ~ 21486678 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013142
ATGAGTACGGACGCGGAGATGGCCGTTTTTGGCCCGGCTGCCATATACCTGAGGAAGCCTGAGAAGGAGAGGATTGAGGCTCAGAACAAGCCCTTTGATGCCAAAACTGCCTGCTACGTGATTGATGCCAAGGAGCTGTATGTCAAAGGTGTCATCCAGAGTAAAGAAGGGGGCAAAGCCACTGTCAAGAATGAGAAGGGGGAGACTCTAACAGTCAAGGAGGACGATGTCCACCCAATGAATCCTCCCAAGTACGACAAAATTGAGGACATGGCGATGATGACCCACCTGAACGAGCCCGCTGTGCTGTTTAACCTTAAAGAGCGTTACGCAGCATGGATGATCTAC

Function

NR:

description
PREDICTED: myosin heavy chain, fast skeletal muscle-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013142 True 348 mRNA 0.51 2 21486231 21486678

Neighbor

gene id symbol gene type direction distance location
AMCG00013120 myhz1.2,myhz1.1,myhc4 coding upstream 4951 21475618 ~ 21481280 (+)
AMCG00013140 wu:fd14a01 coding upstream 4951 21476260 ~ 21481280 (+)
AMCG00013124 LOC103370545,LOC102292730,LOC777984,LOC100705928,LOC102793686,LOC100710639,LOC101481850,LOC102288653 coding upstream 37513 21421622 ~ 21448718 (+)
AMCG00013119 LOC106565367,LOC777984 coding upstream 85919 21399406 ~ 21400312 (+)
AMCG00013128 LOC106597527,LOC106569817,LOC106606262,LOC106596646,LOC106585883,LOC106596400 coding upstream 123318 21362315 ~ 21362913 (+)
AMCG00013127 NA coding downstream 58941 21545619 ~ 21547056 (+)
AMCG00013129 LOC107756562,LOC108433489,LOC107570719,LOC107695698 coding downstream 64494 21551172 ~ 21585017 (+)
AMCG00013146 dnah9 coding downstream 286564 21773242 ~ 21911741 (+)
AMCG00013148 NA coding downstream 443377 21930055 ~ 22228496 (+)
AMCG00013149 foxk2,LOC107719587,LOC106601484 coding downstream 789664 22276342 ~ 22292501 (+)
G42331 LOC100710639,LOC102784652,LOC102295130,LOC102192639,LOC101477534,LOC108412652 non-coding upstream 74242 21364104 ~ 21411989 (+)
G42330 LOC106589491,LOC105023009,LOC103368359,LOC100710639,LOC102784652,LOC102295130 non-coding upstream 182018 21256585 ~ 21304213 (+)
G42277 NA non-coding upstream 595899 20889675 ~ 20890332 (+)
G42269 NA non-coding upstream 645671 20839589 ~ 20840560 (+)
G42177 NA non-coding upstream 858897 20627094 ~ 20627334 (+)
G42347 NA non-coding downstream 12295 21498973 ~ 21503924 (+)
G42350 NA non-coding downstream 42103 21528781 ~ 21600968 (+)
G42448 NA non-coding downstream 661616 22148294 ~ 22148513 (+)
G42449 NA non-coding downstream 662907 22149585 ~ 22149787 (+)
G42459 NA non-coding downstream 779679 22266357 ~ 22266636 (+)
AMCG00013118 LOC106594791 other upstream 14671 21286031 ~ 21471560 (+)
AMCG00013126 myhb,LOC108443910 other upstream 64915 21370843 ~ 21421316 (+)
G42326 LOC105030495,LOC106938339,LOC103143718,LOC103461378 other upstream 207503 21269675 ~ 21278728 (+)
G41978 NA other upstream 2456953 19025561 ~ 19029278 (+)
AMCG00013068 NA other upstream 2511869 18967429 ~ 18974362 (+)
G42453 NA other downstream 755751 22242429 ~ 22245790 (+)
AMCG00013147 NA other downstream 761819 22248497 ~ 22260816 (+)
AMCG00013198 NA other downstream 2754591 24241269 ~ 24331854 (+)
G42846 NA other downstream 3260814 24747492 ~ 24749395 (+)
G42858 NA other downstream 3281746 24768424 ~ 24770148 (+)

Expression


Co-expression Network