AMCG00013145 (LOC108424875)


Basic Information

Item Value
gene id AMCG00013145
gene name LOC108424875
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 22023976 ~ 22039234 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013145
ATGGGGATACAACACCTCTTGCTTCTTTTGATATATTTGGACCCTCTGAATGTACTCAGTGCCAATCCGGGGAAGAAACGGAATGGTCCTCCTAGGAAGAACCTGAAGAAGGACGTGAACGGTACTGTCGTGGCCACGGTGCCCACCCCGAGAATCACCCAAGTACCGCCGCCCAAAACTGGCAACCATGAAACGTGCCTCGGCTACTACGACGTGAGCGGACAGTTTGACAAGGAGTTTGAATGCAATAACACCGACCACCGTTACTGCTGCGGGACCTGTTTCCTCCGCTTCTGCTGCCAGTTTAAAGAGAACCGATTAAAGCAGAACACTTGCACGAATTATCACAAACCCGACTGGGTCAAAACTCTGCCCCCGTCCCCCGTTCCCACAGGAGGGACTTACGATCCGAATTTGGATCAGACCAACACAACAGTCTACATCATCTGTGGGGTAATAGCTTTTGTTATCATTATCGGAGTTGCTGCGAAAGTTGCTTATGACAAAGCAACGCGACCCCCTCAGGAAATGAATGTCCACAGAGCTCTTGCAGACATCTTAAGGCAACAAGGACCCATTCCAATATCACACTATGAGCGAGAAAACATTGCAGCCATGGATGGATCACCCAAAGAAAACACGCCTGTTCGATCTTCTTCCAAAAACCATTATACTCCTGTCCACACGTCGAAATCAAACCACGGAAGTCATTATGCGAAGGAGAACTTCCGCAGCGGGGGACCGGACCTACACAACTTCATTTCGTCTGGATTCGTGACGTTAGGAAGAGGGCACCTCAAAGGTAACGTGGATCTTTATCTGCCCATTACCAGAGCACATTGTCCCACTGTAAAGTTGGGGAAGAACTCCTGG

Function

NR:

description
PREDICTED: protein shisa-6 homolog isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013145 True 873 mRNA 0.49 3 22023976 22039234

Neighbor

gene id symbol gene type direction distance location
AMCG00013144 NA coding downstream 88258 21924602 ~ 21935718 (-)
AMCG00013130 NA coding downstream 396580 21596075 ~ 21627396 (-)
AMCG00013141 NA coding downstream 474250 21546040 ~ 21549726 (-)
AMCG00013135 LOC107091756,LOC107691241,LOC106606941,LOC106601503,LOC105910937,LOC107559522 coding downstream 479587 21541433 ~ 21544389 (-)
AMCG00013143 NA coding downstream 492352 21529413 ~ 21531624 (-)
AMCG00013150 wdr45b,LOC107598578 coding upstream 254094 22293328 ~ 22312757 (-)
AMCG00013151 LOC108443562,LOC103039554,LOC107702472,LOC107566485,LOC107581578,LOC107722231,LOC107755515 coding upstream 280428 22319662 ~ 22367010 (-)
AMCG00013153 LOC101159951,LOC102229253,LOC101465124,LOC102212317,LOC102302210,LOC108249263,LOC107387234,LOC101071475,LOC107581637 coding upstream 331631 22370865 ~ 22375360 (-)
AMCG00013156 NA coding upstream 497925 22537159 ~ 22549507 (-)
AMCG00013157 NA coding upstream 532542 22571776 ~ 22572060 (-)
G42440 dnah9 non-coding downstream 118379 21893624 ~ 21905597 (-)
G42382 NA non-coding downstream 596260 21340970 ~ 21427716 (-)
G42386 NA non-coding downstream 623818 21399644 ~ 21400158 (-)
G42383 NA non-coding downstream 677142 21346475 ~ 21346834 (-)
G42372 LOC105910910,LOC103366176,LOC777984,LOC100705928 non-coding downstream 713628 21287320 ~ 21310348 (-)
G42450 NA non-coding upstream 110347 22149581 ~ 22149792 (-)
G42544 NA non-coding upstream 535324 22574558 ~ 22574827 (-)
G42553 NA non-coding upstream 666832 22706066 ~ 22706337 (-)
G42557 NA non-coding upstream 776922 22816156 ~ 22816369 (-)
G42704 NA non-coding upstream 1739691 23778925 ~ 23779350 (-)
AMCG00013133 wu:fd14a01,LOC101068441,LOC101079795,LOC103368359,LOC107721187 other downstream 497144 21503849 ~ 21526832 (-)
AMCG00013131 LOC101068441,LOC106598369,LOC106594844,LOC106593081,LOC106593408,LOC104955241 other downstream 574022 21448329 ~ 21449954 (-)
AMCG00013137 myhm86-1,LOC107373462,LOC107574740,LOC103143810,LOC108243721,LOC106527115,LOC101079795,LOC108261476,LOC101068441,LOC101071797,LOC101163414 other downstream 601858 21411939 ~ 21422118 (-)
G42381 LOC102793686,LOC103366176,LOC105910910 other downstream 648213 21337067 ~ 21375763 (-)
AMCG00013184 prkar1a,LOC107708993,LOC106606198 other upstream 1787375 23826609 ~ 23839146 (-)
G42749 NA other upstream 1804849 23844083 ~ 23847477 (-)
AMCG00013204 mafg,LOC108241257,LOC106533856 other upstream 2840407 24879641 ~ 24902428 (-)
AMCG00013216 NA other upstream 2986504 25025738 ~ 25029004 (-)
G43001 NA other upstream 3036159 25075393 ~ 25078244 (-)

Expression


Co-expression Network