AMCG00013147


Basic Information

Item Value
gene id AMCG00013147
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 22248497 ~ 22260816 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013147
TTTGAGCTGGTGGCTGTCGGGCCAGGGCTGGGCTCTTTAAAAAGTGACGTCAGACGCAGGTGTTTCCTGGAGCAGGTACGCGGCGGGAGCAGACAGCGGCACCGAGGGACGAGCTGCTCTCCATTGCCGTTACTCTTCCCTGACAGCACCATGGCTCTCAGGTGTGTCGGACGGTGCTTCCCGTTATTTTCCCTCGGTCTCATTTTCGATGTGATCGGTCTCACCCTGATTTTAGTCGGGATTTTTGCCAACGTGCAGCTGAACGGCAGGTTCTTCGGGGACTTTCTCATCTACACGGGTGCTATCGTGATCTTCCTGAGTCTGATCTGGTGGATCCTGTGGTACACGGGCAACATCGACATGTCTCCCGAAGAGCAGGACGCGCCGGGCAGGAGGAGCCACTTCGAGCAGTGGGCGAGGAAGCTGTCCGAGAGGCTCTCCAAAGGGGGGCTCAAGACCCTGGAAGCCGGGGAGAAGTGCATCGGGGGGAAGGAGCCGAAGAAAGGGCACATCCCCACCCACGTTGCCACCCGCATTACCTGGAAGACGGCGGACCGCAATGGCTACGACAACAAAGGCTTTGATGCCGTTTCTGATCTCGCCGCACACGAAGGGAAAAATGTGGAGCTCAATACTCTGGACAAGTCCGAGGCGACTTTACAGCACCTGGAAGAGGCGAAAGCGGAAAGACTTCTCTTTTGGGACTTTTTGGTTTTATCGGGGCCGATTCTCATTGGTCTCAGCCTCCTCTTCTGGATATTGTGGTACTTGGGGAATCTTACCGTCCCGTATGAAGAGCTGAAGTGGATATCAAGATTAGAAATCTCAGGAGAACtgtgaagaagatgaagaatgATGAAGGATGCCTTTTGCATACCAGTCCTGGCAACGAAGCCTCAAAATCAGTGGGATTTATATTACACGGACAcatcctcactgaaggaatctGCTAGCGTGACGCGTTACAATTTCTTTCAAGTTTCACATTTTGAGCCTCggttgctgttattatttaagtaCCAGATGAAGACAGAAACCTATAAGGGTGTTAACCATGCTTCTTCCTTTGCAATAGTGGGTGTAAATACTATAGTTGTGTAAGCAAAGTAAGGATAATCACTGAAAagcttaatacattatttttgtacaagattgtttacacatttttaagaaggatagtgaaaatgttaaactgtAGAGGCTTTGGGACTTTTTAATCAGAAATCTGACATCAGAAAAGACATTCAGTTAGGCCTGGCAGAGATCATTCAGGATACAGTTCCTATAATCCTATGTATgctgtttgtatatataatatatatgacaCTATAATGAGCGTCTGTGTGGATCCTGAGTTGGGAAGAGGATGCGGCCTAACAGGAAGATTGAAGAACACTCTGAAATCACCAGGGCTCTGTACTTGTGGACATCAGTCATTGCACATTAACAGCCCTTATAAAGTACAGCTTCTGGTCCACGATGACACTTGTATTAATTGGCTCATTAATGAGCTGAAAGTCGGGTCTGTAATTCAGGGATATTTGAGAGAGATTCAAAAGTTGGGATGACAGgacaaaacacatgcacatattttCATTCTGGTCCATGTTTTTGACCACTTTGTGTACAAATGGGCATATTCTTTAAAATTGACATGCATATCTCTGTACACATCTTTTAGTGACTACATTATGTGAGATAACAAAACCATTGGAATGTAATACGTTCTATTTTTTAAgatctatttttgtttctaaCCTGTTACTGTTTTCGGTACCCAccctgtttctttgtgttagGAAACGTCACTGTCATACCATTTTAATCCTCCGTACACCAGCACTGCAGAAATGTGGGCCAATAAATATTCCCAGGTTCTGAAGAGAATTTCTACCGTTTGTGGTGTTCTTTCATCCAGTTTCTCAGACGAGGGCATTATTCTTCTCTGTTGATATTGTGATTATGATAAAGTTAATGATTTACATAATAGTATTTGTGATTACCTATAAGAGAGCTTAGAGAAGTGGTGATAAAGTTTTTTCTAGTGTATTCAGCAAGCGAACGAGCAAGGAAAAGCCTAAATTGCTGAGTTTTAGATAGACTTTGAACTtggtatctatctatctaatctATCCTCTGTCTAGGAGAGGGAACTCTTAAGATACTTCAATGAACAGACAAAACTATAGTGTCACCACAGTcttcaataattaattgataagATACTAATTTCACAGAGTTTGTTGggggtaaacacacacatacacacatatgagCAATAATCAGTAATAACTAATTTAGGATAACAATGAATACCACACTTGCGTCATTTAATGTTGCTGATCCGAGCACAGTGGCAAATTTAATGCTGTTTGAGATCAGCTTTGGAACTTGAAGGCAGCGATATGATAATAGGGACATCAACGCTGTTAAAAGTGTCTCCCAGACTTCTAACAAACCAACATCTGTTGCCTTTTCTTCATTAATCAGATCACTCGGCTCCGTTACTTAAAAGTGGCAGAGTGTGTCATTACTAATGTAGCCCTTTGGCTTGTCTGCCATCaagaaaaatctgaaactgACATCAGGCTGTTTTGCCGAATGGTATTGTGGGACACAGTGAGAAGCATTTTATTCGGGCCCATGGGATTTGGTTTGCTGTTTATGCAAGACTCCAGCTCATTGCACTCATGGCAGATATCCCCTACTACTTCCTTAGGTACACTGGCTTTACATATAAGTAGCAGAACAAACAACCTCTTCACATGATTGGTAACAGAGTCAGTG
>TU52926
caaaaatgtaaggCGTGTTACAATGTGACTCTCCGTGCTAAACAAAGGCATCTGCCCGTCTTTAAAATAGGTGTGTAGATCGTTTCCCTGCTCATTTCTCCGTGGCCATGGACGCTGTGAAGCCTCTGGGCCGGTGCCTGCTGTTCTTCTTCTTGGCCGTGCTGTTTGATGTGGTCGGTCTCATCCTCTTTCTGATTGGGATTTTCGCCCCGCTGAGCTTTTGGGACTTTTTGGTTTTATCGGGGCCGATTCTCATTGGTCTCAGCCTCCTCTTCTGGATATTGTGGTACTTGGGGAATCTTACCGTCCCGTATGAAGAGCTGTGAGTGCGGTGAAGTGCGCTTGAGcaacataacattaaaacacGTGTACAAGCTAAACCGACGCAGACTGTCAGTGCACAAGCTGACTCGGGTTTGGAAATACAGTACCGGTTTAATGTGCGGGATTCAGACCGGATACACGGGCTCCTGGGGATGTTCAACATGCATCATCTCTCTGAAAAGGAAGTGGATATCAAGATTAGAAATCTCAGGAGAACtgtgaagaagatgaagaatgATGAAGGATGCCTTTTGCATACCAGTCCTGGCAACGAAGCCTCAAAATCAGTGGGATTTATATTACACGGACAcatcctcactgaaggaatctGCTAGCGTGACGCGTTACAATTTCTTTCAAGTTTCACATTTTGAGCCTCggttgctgttattatttaagtaCCAGATGAAGACAGAAACCTATAAGGGTGTTAACCATGCTTCTTCCTTTGCAATAGTGGGTGTAAATACTATAGTTGTGTAAGCAAAGTAAGGATAATCACTGAAAagcttaatacattatttttgtacaagattgtttacacatttttaagaaggatagtgaaaatgttaaactgtAGAGGCTTTGGGACTTTTTAATCAGAAATCTGACATCAGAAAAGACATTCAGTTAGGCCTGGCAGAGATCATTCAGGATACAGTTCCTATAATCCTATGTATgctgtttgtatatataatatatatgacaCTATAATGAGCGTCTGTGTGGATCCTGAGTTGGGAAGAGGATGCGGCCTAACAGGAAGATTGAAGAACACTCTGAAATCACCAGGGCTCTGTACTTGTGGACATCAGTCATTGCACATTAACAGCCCTTATAAAGTACAGCTTCTGGTCCACGATGACACTTGTATTAATTGGCTCATTAATGAGCTGAAAGTCGGGTCTGTAATTCAGGGATATTTGAGAGAGATTCAAAAGTTGGGATGACAGgacaaaacacatgcacatattttCATTCTGGTCCATGTTTTTGACCACTTTGTGTACAAATGGGCATATTCTTTAAAATTGACATGCATATCTCTGTACACATCTTTTAGTGACTACATTATGTGAGATAACAAAACCATTGGAATGTAATACGTTCTATTTTTTAAgatctatttttgtttctaaCCTGTTACTGTTTTCGGTACCCAccctgtttctttgtgttagGAAACGTCACTGTCATACCATTTTAATCCTCCGTACACCAGCACTGCAGAAATGTGGGCCAATAAATATTCCCAGGTTCTGAAG
>TU52933
caaaaatgtaaggCGTGTTACAATGTGACTCTCCGTGCTAAACAAAGGCATCTGCCCGTCTTTAAAATAGGTGTGTAGATCGTTTCCCTGCTCATTTCTCCGTGGCCATGGACGCTGTGAAGCCTCTGGGCCGGTGCCTGCTGTTCTTCTTCTTGGCCGTGCTGTTTGATGTGGTCGGTCTCATCCTCTTTCTGATTGGGATTTTCGCCCCGCTGAGCTTTTGGGACTTTTTGGTTTTATCGGGGCCGATTCTCATTGGTCTCAGCCTCCTCTTCTGGATATTGTGGTACTTGGGGAATCTTACCGTCCCGTATGAAGAGCTGTGAGTGCGGTGAAGTGCGCTTGAGcaacataacattaaaacacGTGTACAAGCTAAACCGACGCAGACTGTCAGTGCACAAGCTGACTCGGGTTTGGAAATACAGTACCGGTTTAATGTGCGGGATTCAGACCGGATACACGGGCTCCTGGGGATGTTCAACATGCATCATCTCTCTGAAAAGGTTCAAGAAGTGGATATCAAGATTAGAAATCTCAGGAGAACtgtgaagaagatgaagaatgATGAAGGATGCCTTTTGCATACCAGTCCTGGCAACGAAGCCTCAAAATCAGTGGGATTTATATTACACGGACAcatcctcactgaaggaatctGCTAGCGTGACGCGTTACAATTTCTTTCAAGTTTCACATTTTGAGCCTCggttgctgttattatttaagtaCCAGATGAAGACAGAAACCTATAAGGGTGTTAACCATGCTTCTTCCTTTGCAATAGTGGGTGTAAATACTATAGTTGTGTAAGCAAAGTAAGGATAATCACTGAAAagcttaatacattatttttgtacaagattgtttacacatttttaagaaggatagtgaaaatgttaaactgtAGAGGCTTTGGGACTTTTTAATCAGAAATCTGACATCAGAAAAGACATTCAGTTAGGCCTGGCAGAGATCATTCAGGATACAGTTCCTATAATCCTATGTATgctgtttgtatatataatatatatgacaCTATAATGAGCGTCTGTGTGGATCCTGAGTTGGGAAGAGGATGCGGCCTAACAGGAAGATTGAAGAACACTCTGAAATCACCAGGGCTCTGTACTTGTGGACATCAGTCATTGCACATTAACAGCCCTTATAAAGTACAGCTTCTGGTCCACGATGACACTTGTATTAATTGGCTCATTAATGAGCTGAAAGTCGGGTCTGTAATTCAGGGATATTTGAGAGAGATTCAAAAGTTGGGATGACAGgacaaaacacatgcacatattttCATTCTGGTCCATGTTTTTGACCACTTTGTGTACAAATGGGCATATTCTTTAAAATTGACATGCATATCTCTGTACACATCTTTTAGTGACTACATTATGTGAGATAACAAAACCATTGGAATGTAATACGTTCTATTTTTTAAgatctatttttgtttctaaCCTGTTACTGTTTTCGGTACCCAccctgtttctttgtgttagGAAACGTCACTGTCATACCATTTTAATCCTCCGTACACCAGCACTGCAGAAATGTGGGCCAATAAATATTCCCAGGTTCTGAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013147 True 2787 mRNA 0.43 3 22248497 22260816
TU52926 False 1589 lncRNA 0.41 2 22257506 22259912
TU52933 False 1595 lncRNA 0.41 2 22257506 22259912

Neighbor

gene id symbol gene type direction distance location
AMCG00013148 NA coding upstream 20001 21930055 ~ 22228496 (+)
AMCG00013146 dnah9 coding upstream 336756 21773242 ~ 21911741 (+)
AMCG00013129 LOC107756562,LOC108433489,LOC107570719,LOC107695698 coding upstream 663480 21551172 ~ 21585017 (+)
AMCG00013127 NA coding upstream 701441 21545619 ~ 21547056 (+)
AMCG00013125 LOC108412647 coding upstream 761804 21486231 ~ 21486693 (+)
AMCG00013149 foxk2,LOC107719587,LOC106601484 coding downstream 15526 22276342 ~ 22292501 (+)
AMCG00013152 NA coding downstream 118419 22379235 ~ 22470187 (+)
AMCG00013154 NA coding downstream 236577 22497393 ~ 22498928 (+)
AMCG00013155 LOC108443565,LOC103481883 coding downstream 252013 22512829 ~ 22514649 (+)
AMCG00013158 NA coding downstream 388360 22649176 ~ 22655621 (+)
G42449 NA non-coding upstream 98710 22149585 ~ 22149787 (+)
G42448 NA non-coding upstream 99984 22148294 ~ 22148513 (+)
G42350 NA non-coding upstream 647529 21528781 ~ 21600968 (+)
G42345 LOC777982,LOC104957706 non-coding upstream 739673 21472716 ~ 21508824 (+)
G42459 NA non-coding downstream 5541 22266357 ~ 22266636 (+)
G42464 wdr45b non-coding downstream 39757 22300573 ~ 22304742 (+)
G42488 NA non-coding downstream 254048 22514864 ~ 22570081 (+)
G42518 NA non-coding downstream 431116 22691932 ~ 22692216 (+)
G42554 NA non-coding downstream 600999 22861815 ~ 22862982 (+)
G42453 NA other upstream 2707 22242429 ~ 22245790 (+)
G42344 LOC108412647 other upstream 761689 21426660 ~ 21486808 (+)
AMCG00013118 LOC106594791 other upstream 776937 21286031 ~ 21471560 (+)
AMCG00013126 myhb,LOC108443910 other upstream 827181 21370843 ~ 21421316 (+)
G42326 LOC105030495,LOC106938339,LOC103143718,LOC103461378 other upstream 969769 21269675 ~ 21278728 (+)
AMCG00013198 NA other downstream 1980453 24241269 ~ 24331854 (+)
G42846 NA other downstream 2486676 24747492 ~ 24749395 (+)
G42858 NA other downstream 2507608 24768424 ~ 24770148 (+)
AMCG00013236 NA other downstream 3252537 25513353 ~ 25521681 (+)
AMCG00013248 NA other downstream 3532589 25793405 ~ 25798013 (+)

Expression


Co-expression Network