AMCG00013149 (foxk2,LOC107719587,LOC106601484)


Basic Information

Item Value
gene id AMCG00013149
gene name foxk2,LOC107719587,LOC106601484
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 22276342 ~ 22292501 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013149
ATGGCGGTGGTAAGCGGGGTGTCCGGGCCGGCGGTCGCCCGGCTTGAGGGCCGTGAGTTCGAGTACATGATGAAGAAGCGCTCGGTGACCATCGGGCGCAACTCCTCACAGGGCTCCGTGGACGTGAGCATGGGCCACTCGAGCTTCATCTCCCGCCGACACCTGGAGATCTTCACCGCCGGCGAGGACGGCACCGGCGGTGGAGATTTCTACCTGCGCTGCCTCGGCAAAAACGGGGTGTTTGTAGACGGGGTGTTTCAAAGACGGGGGGCCCCGCCACTGCAGCTCCCCAGAGTGTGCACCTTCAGGTTTCCCAGCACAAATATCAAGATCACATTTACAGCTCTGTCCAGTGACAAGAAAGAAAAGCGGGAGGCGCCAGAATCGCCAGTAAAGCCAGTGCAGCCCCAGATCTCACCCTTAACAATAAACATTCCAGACAACATCGCACATTTAATGAGTCCACTTCCTTCCCCTACAGGAACTATCAGtgCTGCCAACTCTTGTCCATCGAGTCCACGGGGAGCAGGGTCATCCAGCTACAGAATGGGCCGCGTTATTACCTCTGATCTGCAGCTTATAGGGGACAATTCACAGTCCGAAAATGATAAAGAAGCATCTGGAGGAGATAGCCCCAAGGATGACTCCAAGCCACCATACTCGTATGCACAGTTAATAGTCCAAGCGATCACAATGGCACCGGACAAGCAACTCACACTAAATGGAATATACACGCATATCACCAAAAACTATCCTTACTACAGGACCGCAGACAAGGGCTGGCAGAACTCAATCCGTCACAATCTTTCTCTGAATCGCTACTTTATTAAAGTGCCCCGATCACAAGAAGAGCCTGGCAAAGGTTCCTTCTGGAGGATAGACCCTGCGTCAGAGAGCAAACTCATTGAACAGGCATTTAGGAAACGAAGGCCAAGGGGTGTTCCCTGCTTTAGGACACCTCTTGGACCCCTGTCATCTCGAAGTGCCCCGGCCTCCCCAAATCACTCGGGGGTGCTGTCGGCTCACTCCAGCGGGGTGCAGACGCCGGAGAGCCTGTCTCGAGAAGGCTCTCCTGTCCCAATGGAGCAAGAGCCAGCCCCCGCCCCAGCGCCTGCCCCCGCCCCCGTCGTCCAGCCCAAACTAGCAGTAATACAGGAGGCCCGCTTCGCACAGAGTGCACCAGgttcACCTCTCAATAGCCAACCTGTTTTAATCACAGTCCAACGCCAATTACCACAGAGCATGAAACCGGTCACTTACACTGTTGCCACTCCCGTGACGACCTCCACATCCCAGCAGCCGATGATGCAGACTGTCCATGTCGTCCATCAGATCCCCGCTGTGTCGGTGACCAGTGTGGCCGGATTAACAGCAGCCAATACCTACACGGTGGCTGGTCAGGCCATGGTCACTCAAGCAGCACTGGTCAATCAGACTAAAACTGAGCCCCAGGAGAATGGAGAGCACAAAGAAATCAAAGTGAAAGTAGAACCTGTTCCTGCCATCACCCACGCTACTATCGGAGCTGCTGGTCGTATCATTCAGACGTCTCAGGCCACACCTTTACAGACAGTCACCATCGTGCAACAAGCCCCTCTCGGGCAGCACCAGCTACCAATCAAAACCATTACACAGAACGGGACTCACGTGGTCCCCATCACCACTGCCATTCAAGGACAGGTCAACACCGCTGTCGCAAGCCCGCTACATATGTTGGCAACCCACGCTTCTGCGTCGGCATCCCTTCCAACGAAACGGCAGAACGGAGACCAGGCAGAGCAGCCAGAACTCAAACGTATCAAAACTGATGAAGGAGAGAGCATAGTCATCGCTGTTAACATGGACACTCCGGCCGTGAGCGAACAAGGCAGCCAGAACTAA

Function

symbol description
foxk2 Enables DNA-binding transcription activator activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and magnesium ion binding activity. Involved in negative regulation of transcription, DNA-templated and positive regulation of transcription by RNA polymerase II. Located in mitochondrion and nucleoplasm.

NR:

description
PREDICTED: forkhead box protein K2 isoform X1

GO: NA

KEGG:

id description
K09404 FOXK; forkhead box protein K

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013149 True 1881 mRNA 0.55 9 22276342 22292501

Neighbor

gene id symbol gene type direction distance location
AMCG00013148 NA coding upstream 47846 21930055 ~ 22228496 (+)
AMCG00013146 dnah9 coding upstream 364601 21773242 ~ 21911741 (+)
AMCG00013129 LOC107756562,LOC108433489,LOC107570719,LOC107695698 coding upstream 691325 21551172 ~ 21585017 (+)
AMCG00013127 NA coding upstream 729286 21545619 ~ 21547056 (+)
AMCG00013125 LOC108412647 coding upstream 789649 21486231 ~ 21486693 (+)
AMCG00013152 NA coding downstream 86734 22379235 ~ 22470187 (+)
AMCG00013154 NA coding downstream 204892 22497393 ~ 22498928 (+)
AMCG00013155 LOC108443565,LOC103481883 coding downstream 220328 22512829 ~ 22514649 (+)
AMCG00013158 NA coding downstream 356675 22649176 ~ 22655621 (+)
AMCG00013161 LOC107722232 coding downstream 380701 22673202 ~ 22858651 (+)
G42459 NA non-coding upstream 9706 22266357 ~ 22266636 (+)
G42449 NA non-coding upstream 126555 22149585 ~ 22149787 (+)
G42448 NA non-coding upstream 127829 22148294 ~ 22148513 (+)
G42350 NA non-coding upstream 675374 21528781 ~ 21600968 (+)
G42345 LOC777982,LOC104957706 non-coding upstream 767518 21472716 ~ 21508824 (+)
G42464 wdr45b non-coding downstream 8072 22300573 ~ 22304742 (+)
G42488 NA non-coding downstream 222363 22514864 ~ 22570081 (+)
G42518 NA non-coding downstream 399431 22691932 ~ 22692216 (+)
G42554 NA non-coding downstream 569314 22861815 ~ 22862982 (+)
G42619 NA non-coding downstream 1262171 23554672 ~ 23560660 (+)
AMCG00013147 NA other upstream 15526 22248497 ~ 22260816 (+)
G42453 NA other upstream 30552 22242429 ~ 22245790 (+)
G42344 LOC108412647 other upstream 789534 21426660 ~ 21486808 (+)
AMCG00013118 LOC106594791 other upstream 804782 21286031 ~ 21471560 (+)
AMCG00013126 myhb,LOC108443910 other upstream 855026 21370843 ~ 21421316 (+)
AMCG00013198 NA other downstream 1948768 24241269 ~ 24331854 (+)
G42846 NA other downstream 2454991 24747492 ~ 24749395 (+)
G42858 NA other downstream 2475923 24768424 ~ 24770148 (+)
AMCG00013236 NA other downstream 3220852 25513353 ~ 25521681 (+)
AMCG00013248 NA other downstream 3500904 25793405 ~ 25798013 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_026167 FOXK2 coding NC_007114.7 CM002887.2 11779689 ~ 11828206 (-)
grasscarp (Ctenopharyngodon idella) CI01000047_07445474_07451503 FOXK2 coding CI01000047 null 7444859 ~ 7451503 (-)