AMCG00013151 (LOC108443562,LOC103039554,LOC107702472,LOC107566485,LOC107581578,LOC107722231,LOC107755515)


Basic Information

Item Value
gene id AMCG00013151
gene name LOC108443562,LOC103039554,LOC107702472,LOC107566485,LOC107581578,LOC107722231,LOC107755515
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 22319662 ~ 22367010 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013151
ATGACCCACAAAGGCAGCCCCGCAAAGGCATACGACTTCCTGCTGAAGTTTCTTTTGGTCGGAGACAGTGATGTTGGGAAAGGGGAGATCTTGGCAAGCTTGCAGGATGGAGCCAGCGAGTCTCCTTATGGATACAACATGGGAATTGATTACAAGACGACAACCATCCTTTTAGATGGCCGGAGAGTCAAACTACAGCTCTGGGACACTTCTGGCCAGGGGAGGTTTTGCACCATATTCCGTTCCTACTCCAGAGGAGCCCAGGGCGTGATCCTGGTTTATGACATCACCAATCGCTGGTCTTTTGATGGGATTGACAGATGGATTAAAGAGATTGATGAGCATGCTCCAGGTGTGCCAAAGATCCTGGTGGGAAACAGACTGCACTTGGCCTACAAGAGACAGGTGACGACAGAGCAAGCTCAAGCTTATGCAGAACGCCTGGGCATCACTTTCTTCGAGGTCAGCCCTCTGTGCAACTTCAACATCACGGAGTCCTTCACTGAGCTGGCCCGGATAGTGCTCATGAGACACGGCATGGAAAGACTCTGGAGGCCCAACAAAGTGTTGAGCCTCCAAGACCTCTGCTGTCGTGCCATTGTGTCCTGTACACCAGTTCACCTGGTGGACAAGCTCCCCCTCCCTGTTGCCTTAAAGAGCCACCTCAAGTCCTTCTCCATGGCCAATGGCTTGAATGCCAGGATGATGCACGGACGCTCATACTCTCTCACCgccaacagcagcaacaaaagGAACAGCCTGAAGAAATCCAAAGTCATCCGCGCCCCCCAGAGCCCCTCACAGAGCTGCGCCAGGAACAGCTGCAAGATCTCCTAG

Function

NR:

description
PREDICTED: ras-related protein Rab-40B

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0016567 protein ubiquitination biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07928 RAB40; Ras-related protein Rab-40

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013151 True 837 mRNA 0.53 6 22319662 22367010

Neighbor

gene id symbol gene type direction distance location
AMCG00013150 wdr45b,LOC107598578 coding downstream 6905 22293328 ~ 22312757 (-)
AMCG00013145 LOC108424875 coding downstream 280428 22023976 ~ 22039234 (-)
AMCG00013144 NA coding downstream 383944 21924602 ~ 21935718 (-)
AMCG00013130 NA coding downstream 692266 21596075 ~ 21627396 (-)
AMCG00013141 NA coding downstream 769936 21546040 ~ 21549726 (-)
AMCG00013153 LOC101159951,LOC102229253,LOC101465124,LOC102212317,LOC102302210,LOC108249263,LOC107387234,LOC101071475,LOC107581637 coding upstream 3855 22370865 ~ 22375360 (-)
AMCG00013156 NA coding upstream 170149 22537159 ~ 22549507 (-)
AMCG00013157 NA coding upstream 204766 22571776 ~ 22572060 (-)
AMCG00013160 NA coding upstream 243592 22610602 ~ 22631301 (-)
AMCG00013159 tmem100,LOC102794428 coding upstream 277793 22644803 ~ 22645207 (-)
G42450 NA non-coding downstream 169870 22149581 ~ 22149792 (-)
G42440 dnah9 non-coding downstream 414065 21893624 ~ 21905597 (-)
G42382 NA non-coding downstream 891946 21340970 ~ 21427716 (-)
G42544 NA non-coding upstream 207548 22574558 ~ 22574827 (-)
G42553 NA non-coding upstream 339056 22706066 ~ 22706337 (-)
G42557 NA non-coding upstream 449146 22816156 ~ 22816369 (-)
G42704 NA non-coding upstream 1411915 23778925 ~ 23779350 (-)
G42743 NA non-coding upstream 1534433 23901443 ~ 23901920 (-)
AMCG00013133 wu:fd14a01,LOC101068441,LOC101079795,LOC103368359,LOC107721187 other downstream 792830 21503849 ~ 21526832 (-)
AMCG00013131 LOC101068441,LOC106598369,LOC106594844,LOC106593081,LOC106593408,LOC104955241 other downstream 869708 21448329 ~ 21449954 (-)
AMCG00013137 myhm86-1,LOC107373462,LOC107574740,LOC103143810,LOC108243721,LOC106527115,LOC101079795,LOC108261476,LOC101068441,LOC101071797,LOC101163414 other downstream 897544 21411939 ~ 21422118 (-)
G42381 LOC102793686,LOC103366176,LOC105910910 other downstream 943899 21337067 ~ 21375763 (-)
AMCG00013184 prkar1a,LOC107708993,LOC106606198 other upstream 1459599 23826609 ~ 23839146 (-)
G42749 NA other upstream 1477073 23844083 ~ 23847477 (-)
AMCG00013204 mafg,LOC108241257,LOC106533856 other upstream 2512631 24879641 ~ 24902428 (-)
AMCG00013216 NA other upstream 2658728 25025738 ~ 25029004 (-)
G43001 NA other upstream 2708383 25075393 ~ 25078244 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000055_02608904_02621376 RAB40B.L, MGC114680, RAB40B coding CI01000055 null 2608904 ~ 2621462 (+)