AMCG00013152


Basic Information

Item Value
gene id AMCG00013152
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 22379235 ~ 22470187 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013152
ATGTCATTGCTGCCGCAGTCAGACGAGGCAGAGCCAGAGCACTTTGATGGGTTGTCTTTGCTGTACTGGATGATAATGGGTCCACATGGAATTAACCGAGCAGTGCAGCGCGTGGTGCTCTCCGACTGTAAACAAGGATTAGGGGTTAAAGTCATTGGAGGCTATAAAGACCTGACAGGGGAAGAATATGgcatttttattaaaaggaTTTTACCAGGAGGGGTGGCTGCACAGGATGgaagATTAAAGCGAGGTGACCTTATTTTAGAAGTCAATAATATGAGTCTTGGAGGCGTAACCAATGaaagGGCGGTGGACATCCTGCGCATGGCCTCGGCCTCCAACCACATGTCTCTGTTGATAGCACGCGATGATGAAGCACGGAGAGAATTCCTCGACCTATTGGAGAAGTATGGCTCCATCAGTAACACCGGCTCAGAGAGCAGCTCCCCCACACCTTCAGCCCTAGGAAAACTGGCAGATAACGCATCGTCCTCATCGTCTTCGAGGTCAACCAGTCCCCTGCTTCTCAGTCCAAAGGATGTCACAAGCTATTCTGGCAGCTATACTGTCCCAGCAGTACCACAGCTAATTAATGACAGTGCAATTCAGTTGATATGTGTTGCCAAGGGAACAGGCTTAGGCCTGAACATCATGGGAGGAGCAAACCGCGCCGAGGGGCCTATGGTTTATATTCAGGAAATCGTACCAGGGGGAGACTGCCAGAAGGATGGACGGCTTAAAGCAAGAGACCAGCTAGTATCTGTAAATAAAGAGTCCTTAATTGGAGTTACATATGAAGAAGCAAAAAGCATATTAACGCGTACGAAACTACGGCCAGACCCCACGGTGGAGATCGCGTTCATTCGGAGAAAATCCTCCTCCAGTTCTGGTAGTGCCCCACAGAGCCCCATTTCGCTGCAGCCTCCAGTCAATGGGAACAGCCAGTTACTGAGGCCCACCGGTCTGGGACTGCTGTCTCCCCCAGGGAACCTTATTCCAAAGATTTCATCCACCCCTAACACAGGAAGTGAGACTTTGCCCTCTGTGAAACTAAGCCAAATCCGAGTGGCTCCTTTGAAGAAAGACCAGTCTACTATAATCACACCAGTTACAACTCCTCCAGCTGACTCCAACTCTGTTGGTGAAACTTTGAAGGAGAGCTCTGAAGAAGAGCCGGGTTTTGAAAACCGGACAGATGGCAAATCACAAACTGTTTGTGAAGGAAGCGATGGAGGCGGCACAAGCGACTGCCAGACTGCTCACTTGGAAGAGGTGATGTCTGGCAGCCAGGCCGACGGCTCATCTGCACACAGGAAGTTCTCTCTTCATTCGGCCAGTCGATTACAGTTTGCGAAGTTGGAGGAGGTTTCTGCATCCAATTCTGAGGATCTGGGTGAAATGGAAGGACTGAGAAAGGACCATATTGGGGCTTTAAGGGAGGTGAAGCGACTGCAGgatCAGTTGACAGAATCAGAAAGACGACGCCTTCAGATGCAAGAAGAGCTGAAGAAAGTGAAACAGGAAGCAAAAGCGGCGGTGGAGGAGACTAAAGCCCTGCGCACTCGGATTCACCTCGCAGAGGCCGCCCAGAAACAAGCCCGAGGAATGGAGATGGACTATGAGGAAGTCATCCATCTCCTGGAGGCCGAGATAGCCGAGATGAAATCCCAGCTCGCGGCTCAGCCCGCCCACACTAAAGAAGAAGCTCAAGATCACAAAAAGAGAATTGCTGTGCTGGAGTGTCAGCTCAGAAAATCTGAAGGTGCCAAGAAAGGATTTGAGGTGGCCACGGAGAAGCTGTTGCACTTTGTAGAGCAGCCCTCTGCTGCCTTTCTCAAATTGCAACAGCAGAGCTCGAGTCACAGAGATATCAAGTTCTGCGAACGACCAGAAGATTGGCATGTCTTCCTCCTCACAAGCAATCGCTGCACGGCTGGGAAGAAAGAACCCCTGGACAGCAAGCGCCCTCGTTTTTCACACAATCTAGCCTGTATTGACTGCCCCTTGTGCAGGATTGGTAAAATGCTCATTCGCCCAAATGAAGACGGGCAGCTGCACTTAAACATGGGCTTAGACGTGATTGTCGATTCCCGGGCTCCTCTGAGCTGCAGCTCCTCCACAATGCAGAGGCAAGAGTGCGCACTGAAACGTGTCTCCCACACCAGCCAGCATGTTTTCTGTGTAACTGGAGATGAAGGTCTGCCGTATGGATGGGAAGAGGCTTACACAGCAGATGGGATCAAGTACTTTATCAACCATGTGACTCAGACCACGTCATGGATTCACCCTGTGACCAGCACCCTCAGCCTGTCTGAGCGAGAAGGGGAGGACTTCAGCAGAGACCTCCCTGAACAGAGGAGTTAA

Function

GO: NA

KEGG:

id description
K15302 STXBP4, SYNIP; syntaxin-binding protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013152 True 2367 mRNA 0.51 24 22379235 22470187

Neighbor

gene id symbol gene type direction distance location
AMCG00013149 foxk2,LOC107719587,LOC106601484 coding upstream 86734 22276342 ~ 22292501 (+)
AMCG00013148 NA coding upstream 150739 21930055 ~ 22228496 (+)
AMCG00013146 dnah9 coding upstream 467494 21773242 ~ 21911741 (+)
AMCG00013129 LOC107756562,LOC108433489,LOC107570719,LOC107695698 coding upstream 794218 21551172 ~ 21585017 (+)
AMCG00013127 NA coding upstream 832179 21545619 ~ 21547056 (+)
AMCG00013154 NA coding downstream 27206 22497393 ~ 22498928 (+)
AMCG00013155 LOC108443565,LOC103481883 coding downstream 42642 22512829 ~ 22514649 (+)
AMCG00013158 NA coding downstream 178989 22649176 ~ 22655621 (+)
AMCG00013161 LOC107722232 coding downstream 203015 22673202 ~ 22858651 (+)
AMCG00013162 NA coding downstream 411721 22881908 ~ 22923730 (+)
G42464 wdr45b non-coding upstream 74493 22300573 ~ 22304742 (+)
G42459 NA non-coding upstream 112599 22266357 ~ 22266636 (+)
G42449 NA non-coding upstream 229448 22149585 ~ 22149787 (+)
G42448 NA non-coding upstream 230722 22148294 ~ 22148513 (+)
G42350 NA non-coding upstream 778267 21528781 ~ 21600968 (+)
G42488 NA non-coding downstream 44677 22514864 ~ 22570081 (+)
G42518 NA non-coding downstream 221745 22691932 ~ 22692216 (+)
G42554 NA non-coding downstream 391628 22861815 ~ 22862982 (+)
G42619 NA non-coding downstream 1084485 23554672 ~ 23560660 (+)
G42705 NA non-coding downstream 1314221 23784408 ~ 23831400 (+)
AMCG00013147 NA other upstream 118419 22248497 ~ 22260816 (+)
G42453 NA other upstream 133445 22242429 ~ 22245790 (+)
G42344 LOC108412647 other upstream 892427 21426660 ~ 21486808 (+)
AMCG00013118 LOC106594791 other upstream 907675 21286031 ~ 21471560 (+)
AMCG00013198 NA other downstream 1771082 24241269 ~ 24331854 (+)
G42846 NA other downstream 2277305 24747492 ~ 24749395 (+)
G42858 NA other downstream 2298237 24768424 ~ 24770148 (+)
AMCG00013236 NA other downstream 3043166 25513353 ~ 25521681 (+)
AMCG00013248 NA other downstream 3323218 25793405 ~ 25798013 (+)

Expression


Co-expression Network