AMCG00013156


Basic Information

Item Value
gene id AMCG00013156
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 22537159 ~ 22549507 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013156
CTGGTCCTAGAGGACTGGTGGTGGCGGACTGGGGGTATAAATGCGATCGCAATGGTGGTAGCATTGTGGCAGGCTCAACTGGGTCTTTAGCAGGACGTCGCCGGTACCCAGACTATCACAATgaggaaaaaactgaaaacagtgcctttctagttgttttttttaagaaggggGATGTGGGATTGTGTGAGAGTAGAGGACGGCTGGTCGAGGTGATATAGgccttttttttctgattttcaaCATCTGAAACACGACTCGTTTGCTTTCAGTTCCTTTGCGATTGTGTGATTCATTTCAACATGAAGAGAGTAAACAGCCTCCAGAGGTTTATGAACAGCCGAGCTGCAGCTAACTGCCGCTACCAGCCCACTTGCTATGAACATGCTGCTAATTGCTACACACATGCGTTCCTTATTGTCCCAGCGTTCGTTGGTACGGCCCTACTGTACCGCCTGTCTGATGACCGCTGGGAGAAGCTCACGGCCTGGGTGTATGGCATGGGGCTCTGTGCCCTCTTCCTCGTGTCTACAGTGTTTCACATCATCTCCTGGAAGAAGAGTCACATGAGgTTAAATCTCCGTGAGCTTGGGCCCCTAGCATCTCATATGCGATGGTTTATCTGGTTAATGGCAGTTGCAGGAACTATATATGTGTTTCACTACCATGAAAAGTATAAACTTGTTGAACTCGCCTTCTATCTAACAATGGGTTTTTTTCCTGCATTGGTTGTGACATCAATGAATAACACGGAAGGACTTCAAGAGCTGGCTTGGGGAGGACTTATCTACTGTCTCGGCGTGTTTTTTTTCAAGTGTGACGGGATTATTCCATTTGCCCACGCTATCTGGCACATCTTTGTTGCCTTGGCAGCAGCAGTACATTATTACGCTATTTGGAAATACCTCTACAGAAGTCCACAAACGGACAGTCTCAGAGATGTATGAAAAGACCCACCAATACTGCATTAGAATTctctaaactttttttttttttttttacttctaaaAGGATAAACTAATTCTTGTGCACTAAAAGAATGGGAATCGGAGATAATTTTCTATCAGCCGAAGGGCACAACCGACAGCCAAAAGTTTACGAATTCAATAGTGTGTCGTTTACCATTTTCTAGCAATGACCTTTGTAATGGCTGAGCTGTTTCTCAGATGGTTACATACTTGCCTGCACACAGCTCAGCCACCGTGAACAGTTTTCAGTCTTCTATTGGGTTTTTTTGTACAGCCACATTGTGTTCTAAAAACAATCTGAGACACTAGGCAACTcactttcttctgctttttttatAAAAGGATTTATGTTCTCATTCCTTAAATTGACAGCATTTTTACAAAAGCAGCTTAAGATAAATCTTTCTGGAAGAACATGAATTAAAGAACTCAAACTTTTGTAGCCAATAAGAAGTCCAATACATTCCATACGCAAATAATGACATACCTCTTTTGTAGACTTATATTCTATCAAAGCCACTTGACGTTTTAGCTGAAAGGTGGTTGAAAAGAGCTGCGGATCCTGTCAAGATTGTTTTAACCAGTTTGTGTCTGCATTTTGAACAagaaattgtgtatttattttttacatttccagtATTGATCCAGGAATTACCCTGATTGCTCTTCCATTTTTATTCAAACTTGTGCACATTAATTATTCAGTATTCATAGTAATGTGGAAGGTGTCAATTTTTGGTCAAATCTAAAAccattatatttttcaacagAGACCAGTTTGTGGACATTAACTGGTCACCAAATGTATAACTGAATTAAGTGTTTGGTGATAcgaactatatatatttttaaattagcattttgcacaaaacattttgcacagtGGTGCATAATTGGTGCAGCTAGGGAGAATTAATTCATTTGGTTGCCTTTTGAAACTTGTAATAGCCATCGCCTCCTGCACATGTAGTCTTTTAACTGatgtaaaaagttaaatgtacaCTTTGGTCTTTGTTTGAATGATGCAACGGGAGACAagactttttttcctctcccagttgAATCCTCTGATGCAAGACGTTTGTGAGGTGGCAATTGATTGAAACCATAGCGGAGTGCATTTACAGTGTGCATTTTAGTCAACTTTCTCAATTTCTAACCTCATTATTATTGGGGGTATTATGACCATGTTCACTGCCTGTGCTctcaaaatgtatgttatgtgtTGCAGTCTGGAAATAATATGAATGGAgttatctccctccctcttgggtcatttatataaaaatccatGTTCATTTTACCTACTTTTCATAGGGGGCAGGCAGCAAACCTCTGTACTGTACAAGTTCAGaataaacaacagaaaatgaaatgcttttgaaatgtaatttgtactttttgttAAAATTGTCTCTTTTGAAAGTGTCTTGTATTTTTTGCTTTAGGCATTCAGTGATATTGGATGGTGATTTAAGCCTTCCTTATCAAATGTGGATATTCTGTGAGTAATTGACCCCTTGACTGTAACTGGTTGGATATTTCAGCtatggcactttttttttttttttaagcataattTTGTGAATacttgtactgtatataattcaaACAATACACCCATTTATTGCAAGCATTTCCTTTTTTGGATTTCTAATATGTGtgaattacttaaaaaaataaataaaaataaataaaaag

Function

GO:

id name namespace
GO:0036302 atrioventricular canal development biological_process
GO:0046578 regulation of Ras protein signal transduction biological_process
GO:0019835 cytolysis biological_process
GO:0003272 endocardial cushion formation biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K11064 MMD; monocyte to macrophage differentiation protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013156 True 2669 mRNA 0.38 6 22537159 22549507

Neighbor

gene id symbol gene type direction distance location
AMCG00013153 LOC101159951,LOC102229253,LOC101465124,LOC102212317,LOC102302210,LOC108249263,LOC107387234,LOC101071475,LOC107581637 coding downstream 161799 22370865 ~ 22375360 (-)
AMCG00013151 LOC108443562,LOC103039554,LOC107702472,LOC107566485,LOC107581578,LOC107722231,LOC107755515 coding downstream 170149 22319662 ~ 22367010 (-)
AMCG00013150 wdr45b,LOC107598578 coding downstream 224402 22293328 ~ 22312757 (-)
AMCG00013145 LOC108424875 coding downstream 497925 22023976 ~ 22039234 (-)
AMCG00013144 NA coding downstream 601441 21924602 ~ 21935718 (-)
AMCG00013157 NA coding upstream 22269 22571776 ~ 22572060 (-)
AMCG00013160 NA coding upstream 61095 22610602 ~ 22631301 (-)
AMCG00013159 tmem100,LOC102794428 coding upstream 95296 22644803 ~ 22645207 (-)
AMCG00013163 NA coding upstream 369791 22919298 ~ 22928441 (-)
AMCG00013164 NA coding upstream 380242 22929749 ~ 22937784 (-)
G42450 NA non-coding downstream 387367 22149581 ~ 22149792 (-)
G42440 dnah9 non-coding downstream 631562 21893624 ~ 21905597 (-)
G42382 NA non-coding downstream 1109443 21340970 ~ 21427716 (-)
G42544 NA non-coding upstream 25051 22574558 ~ 22574827 (-)
G42553 NA non-coding upstream 156559 22706066 ~ 22706337 (-)
G42557 NA non-coding upstream 266649 22816156 ~ 22816369 (-)
G42704 NA non-coding upstream 1229418 23778925 ~ 23779350 (-)
G42743 NA non-coding upstream 1351936 23901443 ~ 23901920 (-)
AMCG00013133 wu:fd14a01,LOC101068441,LOC101079795,LOC103368359,LOC107721187 other downstream 1010327 21503849 ~ 21526832 (-)
AMCG00013131 LOC101068441,LOC106598369,LOC106594844,LOC106593081,LOC106593408,LOC104955241 other downstream 1087205 21448329 ~ 21449954 (-)
AMCG00013137 myhm86-1,LOC107373462,LOC107574740,LOC103143810,LOC108243721,LOC106527115,LOC101079795,LOC108261476,LOC101068441,LOC101071797,LOC101163414 other downstream 1115041 21411939 ~ 21422118 (-)
G42381 LOC102793686,LOC103366176,LOC105910910 other downstream 1161396 21337067 ~ 21375763 (-)
AMCG00013184 prkar1a,LOC107708993,LOC106606198 other upstream 1277102 23826609 ~ 23839146 (-)
G42749 NA other upstream 1294576 23844083 ~ 23847477 (-)
AMCG00013204 mafg,LOC108241257,LOC106533856 other upstream 2330134 24879641 ~ 24902428 (-)
AMCG00013216 NA other upstream 2476231 25025738 ~ 25029004 (-)
G43001 NA other upstream 2525886 25075393 ~ 25078244 (-)

Expression


Co-expression Network