AMCG00013159 (tmem100,LOC102794428)


Basic Information

Item Value
gene id AMCG00013159
gene name tmem100,LOC102794428
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 22644803 ~ 22645207 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013159
ATGCCAGAAGAATCCAGTAAAGACACAATGAAAGTCCCCAAAGCCCCCGAAAGAGTACTGATGGAAAAGACCAATAACAATGACTGTGTGGTGACTGCTGTTCCCCTGGTCAACGAGGTCCAACTGACCGCAGCAACAGGCGGAGCAGAGCTATCTTGCTACCGCTGCACGGTGCCCTTTGGGGTGGTCATTCTCATCGCCGGGATAGTGGTCACTGCCGTTGCCTACAGTTTCAATTCCCATGGATCTATCATCTCCGTCCTTGGGCTAGTGCTTTTATCCACTGGACTGCTGTTGCTCGGGTCAAGCGCTTTGTGTTGGAAAGTaagacaagaaagaaagaaagccaaAAGACGGGAGAGCCAGACGGCCTTAATGGCGAGCCAAAGAAGTAGTTTTGCgtaa

Function

symbol description
tmem100 Involved in BMP signaling pathway. Located in several cellular components, including endoplasmic reticulum; perikaryon; and perinuclear region of cytoplasm.

NR:

description
PREDICTED: transmembrane protein 100-like, partial

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013159 True 405 mRNA 0.51 1 22644803 22645207

Neighbor

gene id symbol gene type direction distance location
AMCG00013160 NA coding downstream 13502 22610602 ~ 22631301 (-)
AMCG00013157 NA coding downstream 72743 22571776 ~ 22572060 (-)
AMCG00013156 NA coding downstream 95296 22537159 ~ 22549507 (-)
AMCG00013153 LOC101159951,LOC102229253,LOC101465124,LOC102212317,LOC102302210,LOC108249263,LOC107387234,LOC101071475,LOC107581637 coding downstream 269443 22370865 ~ 22375360 (-)
AMCG00013151 LOC108443562,LOC103039554,LOC107702472,LOC107566485,LOC107581578,LOC107722231,LOC107755515 coding downstream 277793 22319662 ~ 22367010 (-)
AMCG00013163 NA coding upstream 274091 22919298 ~ 22928441 (-)
AMCG00013164 NA coding upstream 284542 22929749 ~ 22937784 (-)
AMCG00013170 NA coding upstream 827326 23472533 ~ 23483799 (-)
AMCG00013169 NA coding upstream 841138 23486345 ~ 23492834 (-)
AMCG00013168 LOC108435267,LOC107755502,LOC107722214,LOC107581584,LOC107702479 coding upstream 909465 23554672 ~ 23563336 (-)
G42544 NA non-coding downstream 69976 22574558 ~ 22574827 (-)
G42450 NA non-coding downstream 495011 22149581 ~ 22149792 (-)
G42440 dnah9 non-coding downstream 739206 21893624 ~ 21905597 (-)
G42386 NA non-coding downstream 1244645 21399644 ~ 21400158 (-)
G42383 NA non-coding downstream 1297969 21346475 ~ 21346834 (-)
G42553 NA non-coding upstream 60859 22706066 ~ 22706337 (-)
G42557 NA non-coding upstream 170949 22816156 ~ 22816369 (-)
G42704 NA non-coding upstream 1133718 23778925 ~ 23779350 (-)
G42743 NA non-coding upstream 1256236 23901443 ~ 23901920 (-)
G42760 NA non-coding upstream 1267584 23912791 ~ 23917024 (-)
AMCG00013133 wu:fd14a01,LOC101068441,LOC101079795,LOC103368359,LOC107721187 other downstream 1117971 21503849 ~ 21526832 (-)
AMCG00013131 LOC101068441,LOC106598369,LOC106594844,LOC106593081,LOC106593408,LOC104955241 other downstream 1194849 21448329 ~ 21449954 (-)
AMCG00013137 myhm86-1,LOC107373462,LOC107574740,LOC103143810,LOC108243721,LOC106527115,LOC101079795,LOC108261476,LOC101068441,LOC101071797,LOC101163414 other downstream 1222685 21411939 ~ 21422118 (-)
G42381 LOC102793686,LOC103366176,LOC105910910 other downstream 1269040 21337067 ~ 21375763 (-)
AMCG00013184 prkar1a,LOC107708993,LOC106606198 other upstream 1181402 23826609 ~ 23839146 (-)
G42749 NA other upstream 1198876 23844083 ~ 23847477 (-)
AMCG00013204 mafg,LOC108241257,LOC106533856 other upstream 2234434 24879641 ~ 24902428 (-)
AMCG00013216 NA other upstream 2380531 25025738 ~ 25029004 (-)
G43001 NA other upstream 2430186 25075393 ~ 25078244 (-)

Expression


Co-expression Network