AMCG00013161 (LOC107722232)


Basic Information

Item Value
gene id AMCG00013161
gene name LOC107722232
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 22673202 ~ 22858651 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013161
ATGACACCACTGTTGACACAGACCGAGGCCGCCGACTCGGAGCAGAGACCAAGTTCTATGCTCATCGTGTATGAGTTTGATAAAGTTTCTAAGTTACTTAATAAGAGTTTTGGACCTTTTAGGCTTGTGTCCCCACGGACACGGCAGCGGGAATATGACAGAGCTGAAACCTTGCCTGCGTTTGCCGAGAAGCACAACCCCAATAATGGCACACATGAGCATGTGCTCATCTGGGGAATCTCACACAAACCTGCCCTGAGGAAAAGCATCTCCGTGGACGAGCATTTGTTCCAGCCGCCGCACAAAGAACAACACAAGCTGCTCAGCAGGCTGGAGAGAGGCAGGAACAAGCTGAGGAACATACATgacCTCAATTGGTGTTttgaatacaATAACACGTCAGGTTTTAAAATGGTGGCAAaGTCTGGGATCTACAAGCAGATACGAAACACGGAAAAAGCTCCTGTGCTAAAGGGATTGACAGAGCTAGGCTCCGAAGCCTTTCGGACAGAGAGCAAGATCACCCGTTTCGCGCAGCGGCTGCATCAGAGGCACAGAGAGCAAAGTCAGTGCGATGCGCTGAGCAAGGACTTTAAACACTTAATCCGAACAGGTCCTCCTGGCACTTCACAGAGCTTAGACAGGAACTTCCCTGTCAGTATGACTCAGCAAATGCAGAACCTGCACCTCTCGCATGCTAAGAAGGGCGGTGGTCCCTCCTCGCCCAGTGCCGCCAAACGCCTTTACCGTAACCTCTCTGAGAAGCTGAAGGGCAGCCACTCTTCCTTCGATGAGGCCTACTTCTTTGGGCGCTCCGATCGGTTCAGGAAGACCTCTGTGAACGTGCAGTGCAGCGAGGCGCTGTTCGATGCAGTGGAGCAGCAGGACCTGGATGCAGTTCAGATCCTGCTGTATCAGTACACGGCCGACGAGCTGGACCTCAACACCCCCAACAGCGAGGGCCTGACCCCCCTCGACATCGCCATCATGACCAACAACGTCCCCATGGCCAAGATCCTGCTCAAGGCTGGAGCCAAGGAGAGCCCGCACTTTATTAGCCTGGAGAGCAGAGCCCTGCACCTCACCACCCTGGTCCAGGAAGCCCAGCAGCGGGTGAGTGAACTATCAGCCCAGGTGTTGAGTGAAGGCCTGAATCTGGACAGCTCTGACAAGGAAAAACAACTGAAAGCCTGGGAGTGGAGATACAAGCTCTACAAGCGCATGAAAACTGGGTTTGAACACGCAAGGGCCCCTGAGACGCCATCCAGCGTCCGTCTGATTGTAACAAGCAGCACATCACTCACTGTCACCTTCTTGGAGCCGCTCAGCGTCAACTCAGCAGTAGTGACCAAATACAGAGTGGAATGGAGTTGTCTGAAGGACTTATCCTTGCTGGCTGGAGAAATAATAATGGACAATCTTCAGTCTTTGAGGTGCACTATCACTGGTCTCACAACGggaaGGACCTATTACGTGCAGGTTTCTGCCTATAACATTAAGGGCTGGGGTCCCCCACAGTTGGCTACTCCTGCTTTTGCAACTCCATCAAaCTGGAAAGAGTCTGATGGCAGGGAGTCTCGGCACCGGGGACAAATTGAGGCAATGGAACGTCTACTTCAGCAGGTCCGAGTCACACATCAACATTACAGCTGTGGAGatAATTCTAAGTTACAGAATCCTAGTCGCAAGCAGTCTGTCTCCAGGAGCCTGAAACACCTTTTTCATTCTTCAAACAAGTttgtgaaaacactgaaaagGGGACTTTATGTGGCAGCAGTGTTTTATCACAAGGACAGTCTTCTAGTTACCAATGAGGATCAGATACCGATTGTGGAAATAGATGATTCTTACACCAGTTCCATCATGCAAGACTTTCTGTGGTTTACAAAGCTGTCTTGCATGTGGGAAGACGTCCGGTGGCTCCGGCAGAGCATGTCGGTGTCCATGTCCTCCTCCTCTACCCTGCAGGCGAGACAGAAAATGCTGTCTGCTGCTGGACAGCTACAGAACCTGCTCGGCACTCACAATCTGGGACGTGTTTATTATGAGCCCATTAAAGACAGGCACGGCAATGTCCTGATAGTCACAATAAGAGAGATGGAGAGCCTCTTTTCCTTCTTCAATGGAaagtggatgcagatttccaaGCTGCAGAGTCAGAGGAAATCCCTCTCAACCCCAGAGGAGCCCACCGCTCTCGACATACTACTGATCACTATCCAGGATATTCTCTCCTACCAGAGACGAAGCCAGCATCGACTGTCTCCGGGTCTGTACTTGGGATACCTGAAGCTCTGCAGTTCTGTGGACCAAATTAAAGTCCTTGTCCCTCAAAGGCTTCCCAATATGCTGTGCCATATGAAAATAAGAGACAACAGCAATGTTTCCAGAGATGAGTGGGAATGGCTCCAAAAACTGTCTGGCCCTGCTTATGTGGAAAGTGTGGATCAGACATCGGTCTGCCACACTCAACTGTTCTTCTATGAGCTCCAGTTGGCTGTAAAAGGCTTGCTTAAACAAATCAATCTACCTCTGCACCAGGCCAAGCACTTCCGTCTCTACACACAGGAGGTGCTGGAGCTGGGTCACAATGTCTCCTTTCTTCTGCTGCTCCCTGCCTCAGACGACGTCTGCACTGCCCCGGGACAAAATAATCCTTACACCCCGCACTCAGGGTTTCTCAATCTCCCTCTTCAAATGTTTGAACTAGTTCACTTTTGCACTTATAAGGAAAAATTCATCAGCCTATACTGTCGTCTTTCTGCTGTGTTGGACCTTGACTCGCTCATTACCCAGCAGTCACTGAGGGAGGCCATTTCAGACACCGAAGTGGCGTCTGCAAAACAGAGGCACCAACATGTTTTAGACTACATACAGCAAATGGATGAGATGTGGCGAGAAATGCGGTGGATTATGGATGCCCTTCAGTACGCCCGTTACAAGCAACCTGTAGGTGGCGTGCCTATCACCTGGATTATTGACTCGACAGTGGAGCACACAGTTGAGAAGAACGACTCCACATCTTCAAACATGGACTACCTGCCCACTCCCTCCCCATCACCCGAAATGCGCAGAAGAAAGGCTGTAAGCGatTCCCAGCCTGGGTCAGATGAAGAGGGATGCTCTGAAGTATTTTTGCCTACAGACAGCGACTATGATTCAAGCGATGCATTGAGCCCACGGGAGCTGGACCTGGTGTATTCATCATCCCAGGACATCTCTCAGCAGGTGCTCTCCGGCCTGAGTGGGAGCGCGCCAGACGTGCTGCAAGTGCATGACCTGAAATATTCCCTGTGTATGAAGGAGGACTCCAGGTTGTCTAGTGGCTTTGAGGAAGCCGAAGCCTGTACCAGGAACATGGAGGGCTTGACGTTATCTGGGTTCACGGGCAAGGGAACAGACAAGGCTTCCCGTGGCAAGCAGCTCAGCAACCCTCCGAGTAAGAAGAAGTTGCTGTCCAAGCACCAGCCTCACAACTACTTTGGTGGGCACCAGCGCTGGCTCCGTGTGCACAGTGAGAGCCAGTCGGTGTCGCTATCAGAAGGCGTGTACACCCAGCAGCGGGAAACAGAGTTACCTCTGGAGTCAGCCACTGGGGGGGCTGTGAATATTTTCACAGAGCTACCACGTAGTTCATTCTTACCTCACGCCTCAAGTCTCCCCGAAGATGGGAAGAGTCGCTACATGGAGTCAAAACAGAACGTGCGCAGGATATTTGTGGAGCCCTGCAGGAGGAGTTCCCCAAGTGAAGATATCAACGCCTGGACTCTGAATGTGGGAGAGTTGCAAGCCGCCGCCACCGCTGGGGACATCACTGCTGGTTCTGAATGCGCAGTGGTTCAAGATGTCGATTCTGACGACCAAACTAATTCTCAAGTATCTGAAATCTTCAGCAGTACACTCTAG

Function

NR:

description
PREDICTED: ankyrin repeat and fibronectin type-III domain-containing protein 1-like

GO: NA

KEGG:

id description
K24478 ANKFN1; ankyrin repeat and fibronectin type-III domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013161 True 3906 mRNA 0.51 25 22673202 22858651

Neighbor

gene id symbol gene type direction distance location
AMCG00013158 NA coding upstream 17581 22649176 ~ 22655621 (+)
AMCG00013155 LOC108443565,LOC103481883 coding upstream 158553 22512829 ~ 22514649 (+)
AMCG00013154 NA coding upstream 174274 22497393 ~ 22498928 (+)
AMCG00013152 NA coding upstream 203015 22379235 ~ 22470187 (+)
AMCG00013149 foxk2,LOC107719587,LOC106601484 coding upstream 380701 22276342 ~ 22292501 (+)
AMCG00013162 NA coding downstream 23257 22881908 ~ 22923730 (+)
AMCG00013165 NA coding downstream 542489 23401140 ~ 23410915 (+)
AMCG00013166 LOC107581581,LOC108435270,LOC107684054 coding downstream 575189 23433840 ~ 23443384 (+)
AMCG00013167 LOC103369437 coding downstream 673300 23531951 ~ 23540214 (+)
AMCG00013171 NA coding downstream 723060 23581711 ~ 23610831 (+)
G42488 NA non-coding upstream 103121 22514864 ~ 22570081 (+)
G42464 wdr45b non-coding upstream 368460 22300573 ~ 22304742 (+)
G42459 NA non-coding upstream 406566 22266357 ~ 22266636 (+)
G42449 NA non-coding upstream 523415 22149585 ~ 22149787 (+)
G42448 NA non-coding upstream 524689 22148294 ~ 22148513 (+)
G42554 NA non-coding downstream 3164 22861815 ~ 22862982 (+)
G42619 NA non-coding downstream 696021 23554672 ~ 23560660 (+)
G42705 NA non-coding downstream 925757 23784408 ~ 23831400 (+)
G42779 sstr5,LOC104918336,LOC102219310,LOC102291375 non-coding downstream 1139143 23997794 ~ 24003887 (+)
G42780 NA non-coding downstream 1148702 24007353 ~ 24007850 (+)
AMCG00013147 NA other upstream 412386 22248497 ~ 22260816 (+)
G42453 NA other upstream 427412 22242429 ~ 22245790 (+)
G42344 LOC108412647 other upstream 1186394 21426660 ~ 21486808 (+)
AMCG00013118 LOC106594791 other upstream 1201642 21286031 ~ 21471560 (+)
AMCG00013198 NA other downstream 1382618 24241269 ~ 24331854 (+)
G42846 NA other downstream 1888841 24747492 ~ 24749395 (+)
G42858 NA other downstream 1909773 24768424 ~ 24770148 (+)
AMCG00013236 NA other downstream 2654702 25513353 ~ 25521681 (+)
AMCG00013248 NA other downstream 2934754 25793405 ~ 25798013 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000055_02453400_02484293 ANKFN1 coding CI01000055 null 2453400 ~ 2484293 (-)