AMCG00013163


Basic Information

Item Value
gene id AMCG00013163
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 22919298 ~ 22928441 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013163
tttttttccttttcgtTTCATAAAAGAAGGATAGTGGCATCGCAGCAGCCATGGAGGAGTTGAGCGCCGTGGGAGAGCAGGTTTTTGACGCTGAATGCATCCTGAACAAGAGGCTCAGAAAGGGAAAGTTGGAGTATCTGGTGAAGTGGAGAGGTTGGTCATCCAAACACAATAGCTGGGAGCCTGAGGAGAATATCCTTGATCCAAGATTGCTGGCAGCATTTCACAAAAGggaacaagaaaaggaaattctATTTCGCAAACGAGGGAAAAGACCTAGAGGGCGACCACGAAAAAATGTGGAAGCCTCGGCTCCAATAGCAACCAAATCGACCAGCTCTTCGtcgtcatcatcatcttcatcgtcatcttcctcctcctcctcctcctcgtcttcctcttcctcctctgaaGATGAGGACAATGAAACGGAGACGAAACCAGGACCCCGGAGTCGTGAGCTCCATCCGGTGCCACAAAAGAAAGCCCAGGTGATCGTGGCAAAACCAGAACCAGTCAAGAAGAAGAGAGGAAGGAAAGCCCTCCCACCTGAGCTGAAAGCCCTCAGACAGGGCAAGAGCCCCCGCAAGGTGCTAAAAACTGCTGTGAAAGAGCCCCCAGCTGAGCCCAAAGTTGGAATCAAGAAACCACTTCAGCCAGCTAGTTTCACATACCCAGGGATGAGCAGAGGTATGAGGGACAATGTCCCGGGGGGCACTCAAAGTGGGGGCTCTTTTACACAGGGCACCTCTGTGAAAACCTCTTTAAATACAGCTGGATCCAACCGCCCTTTGGCCACAGCCATTCCATCCCTTGGTAGACAGACTACAAATAAGAACACACCAGACTTCAAGCTCTCCGTGTCTGATGTCAGCAGCAGAGCAGGATTAGACTTGAAAATTGCTGCCTCGAAATCCCCTGGTGTTGCAGCACTTAATCTACACAACTCTAAACTCTCAAACAGCAGCCAAGGTGTTGCCCAGGCACCTCTTGGGTCTCCAAATGGGCAGAAAAAGCAGGAGCCACCTGGGCAGATGCTCCTGCCACGGTTGGCAGCCAGCAAGCCAGTCGCTGGTCCCTCCCCTTTGAAAGGCGGTACGAACCAGGCTCTCAACATGCAGGCGTTGAACCTGCAGAGTGTCAGCAAGGTGGTGCAGAGCAGCAGTCCCTCAGGGAATGGGACCACCCATAGTTCAAACCTGGTGAATGTAGGAAGCCCACTTAGAAAAACTGTGGGGGGTATTCCTCGGCAAACAAGCAATTCTGGACAAAATGTTAGTACATCAGGCAGTCAAAACCCAGTCCCCAGAAACAGCATCTCTGGAGGAGAGACTGGGAAGTTGGAGGATAGCAGTCATAAGCGTCCCGCTGAGGGGGAGAAGCACAATAAGAGGGCTGGAAAGGCAGAAAAGGGTCTGATGCAGAACAGCCAGTCAACAGATGGAGGAAGCAACCAGACAAGACAGGAGAGGACAACATCCAAGGACAGCGCCAAGCCCACAAAGGGCTTGAGTGAGATGAGCACTGGGGAGGAGGAGACCAGTTCAGATTCAGACCAGGACTCTCAATTTTCCAGTAACGGACAGAACATGTCCATCTCTGTGCAGACCAACCAGGACTGGAAGCCCACACGCAGCCTGATCGAGCACGTCTTTGTCACGGATGTCACGGCTAACTTGGTCACTGTAACTGTGAAGGAGTCCCCAACCAGCGTGGGGTTTTTCAACATTCGCAATTACTGAACGTGCCATTCTGCATCCCAACACCACTCTCTACTGAACTACAGTTCCCCTGGGCAGACATGGACAGAGCAGAATCGGGCATATCAGAAGGAGGGAAGGAAGATAAGCTATTGCAGAGGCAATGCAGAGAGGAGGTTTGCGGCCGTGGTAATTCTCCATTTATCTAGTATTAGTTCTGTGACCTTTTCCTCCTGTAttgtgctttgctttgttttcatacTGGGCATCTCTTCATGCTTCATGCAAGtcacacagaacaaaaaatacaaactggaaatcTGGATTTGTCCCAAATGGACCTTTTGGTTCATGAAATAATGCTTCTTCAGTATTTACGGATTCCCAATGCTTCAGAGCATTTTCCTGTATTATCATGGCATTGCATGGATACAGGTTATCTTGAGCCATTTTTCAGCAGTGCAGAACAATTCAAATTGATATGTATTCATGGTGTTATCCCAACAGTATGGCTTTAAATACTATTCAATTTAACTTTCCCCCCTCGTGATTGAaaccaacaagaaaacaagatgCAGAGATTAATCTGCATACTTGCAACACATAATTGCATATGCCTTAAGatatacagcaaaataaatacaaaaatcagtttaaaaGTGACAAGTATTTATCTTGaaattttaattacagttttaaaatgggACATTTGAAGTgcaattgtgatttttttatttttattattattattggaagaAGCTCTGGCTTCTAAGCTTTCAGTAACATTTAATGAGAAATCTCACCTGTCTATCGTGTTGCtgattcaatgtcagttgtagGGTCATTAAGGGTTTCCATAAAATAGTTTCTTAGTTCTGCTACATGAAAGGAATACATTAAGACTTGGATGGAATCATATTCCATTGCTTTTAGACTGGAAGTGTGTTTTTGCAAGTAgagtatatttaaaagtattttaaagcgCGGGGTTTACTAGTTTACTAGTAACATGCAAGGACACTTGAAAGTGCTATTATTACAGAGGCAATGGGTCAGATAAATCATCACTTATGAAAATGATCAATTTGATGAATATTACTACTCGttacaaatgtgtaataaaactCAATTCAACAACTGGAATGCTGATTTACAAACCTGAGAAGAATACATATGGAGAATGTTTTaccttccaaaaaaaaaaaaaaagatataaattcAACTTCAGTTGAGAAGTGGATTTAAATATTGATTCCTGCAACAGAATCTAAAAAACTGCCAActgatgttttcatttcccTTGCACCCTGGTTGTTGGCAAatatttttaactatttaaaactgaaatcctCCAACACTCCACATCACATACTGTAAAGTCCGAGGCCAAAATTAAAGTTGGCTTTGGAGTTGGATATTTGAAGCTGTGGAGAGGGCAAAACTGTAGAATTGAACACCTATGTTCTTCTGTGATGGCTTTCTAAGTCTTTTGATTAGACTACAGGAGTGTTATGTTGCCTGAACCAGTTCATCTTCAACATACACCTTGCTCAACAGCCATGATACAACACTGGTCATTTATGAACATTTATTCTACTTATTCTGATACAGGAAGTTGTTTTCTTaccttttcaaaatgctttacaACTCCATCCACTTTTATCCAACTCAATGGatcttttcttctgttcctGGGAGAGGTACAAAATCACAAGTTTGTGAGGTTTCTAAACAACGGAGATCTATAGAAAGCAGCTAAGTTGTTTCCGTTTGAAATCAGAACAAATGAAGTTTactcaaacatttaaacagggTGATGGAGCTTTAAAAACACTGGGGTATGTTGAGTGGGTATATGGCAAGGAGAAATATTTGAGGAAACAGATGCACGGTCGGCCTACttaaaggtttttaaatgtcaagatatgattttaattgaaaaattactaaaaatacactcaaattggggggggggggg

Function

GO: NA

KEGG:

id description
K11451 CBX2; chromobox protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013163 True 3678 mRNA 0.43 6 22919298 22928441

Neighbor

gene id symbol gene type direction distance location
AMCG00013159 tmem100,LOC102794428 coding downstream 274091 22644803 ~ 22645207 (-)
AMCG00013160 NA coding downstream 287997 22610602 ~ 22631301 (-)
AMCG00013157 NA coding downstream 347238 22571776 ~ 22572060 (-)
AMCG00013156 NA coding downstream 369791 22537159 ~ 22549507 (-)
AMCG00013153 LOC101159951,LOC102229253,LOC101465124,LOC102212317,LOC102302210,LOC108249263,LOC107387234,LOC101071475,LOC107581637 coding downstream 543938 22370865 ~ 22375360 (-)
AMCG00013164 NA coding upstream 1308 22929749 ~ 22937784 (-)
AMCG00013170 NA coding upstream 544092 23472533 ~ 23483799 (-)
AMCG00013169 NA coding upstream 557904 23486345 ~ 23492834 (-)
AMCG00013168 LOC108435267,LOC107755502,LOC107722214,LOC107581584,LOC107702479 coding upstream 626231 23554672 ~ 23563336 (-)
AMCG00013177 gps1,LOC107654488,LOC107721507,LOC107688111 coding upstream 782259 23710700 ~ 23721512 (-)
G42557 NA non-coding downstream 102929 22816156 ~ 22816369 (-)
G42553 NA non-coding downstream 212961 22706066 ~ 22706337 (-)
G42544 NA non-coding downstream 344471 22574558 ~ 22574827 (-)
G42450 NA non-coding downstream 769506 22149581 ~ 22149792 (-)
G42440 dnah9 non-coding downstream 1013701 21893624 ~ 21905597 (-)
G42704 NA non-coding upstream 850484 23778925 ~ 23779350 (-)
G42743 NA non-coding upstream 973002 23901443 ~ 23901920 (-)
G42760 NA non-coding upstream 984350 23912791 ~ 23917024 (-)
G42800 NA non-coding upstream 1292210 24220651 ~ 24222738 (-)
G42993 NA non-coding upstream 2116937 25045378 ~ 25376323 (-)
AMCG00013133 wu:fd14a01,LOC101068441,LOC101079795,LOC103368359,LOC107721187 other downstream 1392466 21503849 ~ 21526832 (-)
AMCG00013131 LOC101068441,LOC106598369,LOC106594844,LOC106593081,LOC106593408,LOC104955241 other downstream 1469344 21448329 ~ 21449954 (-)
AMCG00013137 myhm86-1,LOC107373462,LOC107574740,LOC103143810,LOC108243721,LOC106527115,LOC101079795,LOC108261476,LOC101068441,LOC101071797,LOC101163414 other downstream 1497180 21411939 ~ 21422118 (-)
G42381 LOC102793686,LOC103366176,LOC105910910 other downstream 1543535 21337067 ~ 21375763 (-)
AMCG00013184 prkar1a,LOC107708993,LOC106606198 other upstream 898168 23826609 ~ 23839146 (-)
G42749 NA other upstream 915642 23844083 ~ 23847477 (-)
AMCG00013204 mafg,LOC108241257,LOC106533856 other upstream 1951200 24879641 ~ 24902428 (-)
AMCG00013216 NA other upstream 2097297 25025738 ~ 25029004 (-)
G43001 NA other upstream 2146952 25075393 ~ 25078244 (-)

Expression


Co-expression Network