AMCG00013169


Basic Information

Item Value
gene id AMCG00013169
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 23486345 ~ 23492834 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013169
AATGGCACACATCCTACAAATAAAAGTGAtccaggaaaaaaattaaactaaaaactaaaagtgGCTCTTTCCCTCCCAGTCGATCATGAAGACCTTGGGCCTGTCGAGCCTGGCTGCCTGCATGTATGTCCTGGGCCTATCCTGCATGGGAATGGTATCCGAGTCATACAGAACCCCTCATTCAGAACTGGACCTGGAGCGATCCGATCTCGGGACAGACCCTGAGGCGTCAGCGCACTCCTCCGAGGGCTACAGAAAAGGTGCCAGcTCCCAGAGCCAGGGGAAGGCATCTGAATGCCGACGGTGCTGTGACACAGAAGAAGAACCCCCTAGGTATCCACAGTCCTTCCAGGTTGTCCCACAGATCAACATTACCATCCTGAAAGGTGAGAAGGGGGACTGTGGCCAACGGGGACAATATGGCAAAGCAGGGAAGACAGGCAACACTGGCCCTCGAGGCCCCAGTGGAATGAAGGGCAGCAAAGGCAGCATTGGGACACCGGGGGACCCTTGCAAGACCTACTACTCAGCATTCTCCGTTGGGCGCAAGAAAGCCCTTCACAGCAACGAGTACTACCAGCCGCTCATCTTCGACACGGAGTTCGTCAACCTCTACAACCATTTCAACCTGTTCACAGGCAAGTTCTTCTGCTACGTGCCGGGGGTCTACTACTTCAACCTGAACGTGCACACCTGGAACCAGAAGGAGACCTACATCCACCTCATGCACAACGAGCAGGAGGCTGTGATTCTGTACGCCCAACCCAGTGACCGCAGCATCATGCAGAGCCAGAGCGTCATGCTGGATCTGGAGCAGAACGACGAGGTTTATGTGCGGCTCTTCAAGGGCGAGCGGGAGAATGCCATCTTCAGCGATGACTTTGACACCTACATCACCTTCAACGGATATCTGATAAAAGCCAAGAGTGAAGGGTAgtcagcacccccacccccccacagctTGGGCTGTAGACCATCCACCTTCTAGCAGGCTGCTGGGCCCAGGGGGACACCACCTTCTACAGCAGAGAGGTTGGCCCTCAAACCCACTGACAGAGCTATTTACTCAACAATACAAAGCATTGTTTTCATACATCTTATCCCAAGTGGTATTAAAGATCTGTTCGAGGGTAATTTGATTACACCGTCTCCTATGCACATTTGTTCTTCGTTTAGTGATGGCTGAAGTGGAGATCTCATTCATATTCCTGGTGCAAGAAAATTGATTTCATAAACTATGTTGACAGTAATTCTGAATTTTACGTTGTCAGAATATGAGAAGTTGGGATATATATTCTGAATGCTCTACATGTATTGGAATTCCCACAAATGTGGGTTTACATGGCAAACtgaatattcattttattccaaTAGCTAAGTATGTGCTGCTTATATCCCTCAGCAAATTAGAGAGTGATAGTGGGTTTGTGGTTTACCtttgtgtatgttattttgTAGGGAGGTGGGGTTATGGTAATATTTCAAACAACCAAGAGTGTTTAATTTTGTacccattacatttttatttttacagatattcaatttaatattttgttgtttgttggtgCGTGTGGGTCAGGTTCTCATTTAGTGTGATTCATTCATACACCTGGCAATCTTGGaattctgttctctctctccagctgggCAAACTAATGTGTTTCATACTGATATGTCCCCTGTTATTGACGACTCATGACTAGTTAAATTCCCTCAAAAATCAATTATTGCCGTtggaatgaaatacaaacatgtaATTTCGTACTAACCTGTAATTATCTCAGTGGTTCACTGTGTGTAATAACCAGACTATAATACTAATATGACTAACTGAAAAAGCAGCGCCTCTACCAAACAATattgtcacaaaaaaaaaaaatccatttaagGTATTTTTCTTGTGATATTGTggcaaataattaatattgtagGATACCATGATTCCAGCACTTTTCCAGCTTCATGTTTTCTTCCATAGAAAACTTCAGAagctcccctccccctcccatcTATGTTTATTAACtatcaatgttttaaaaatcctCAATACCATTCAGGTTCCCTCATTGGACCAGAAGTTGTTTCACTTTCTCAAAGCACTTTCCTGGTGCAATTTGAAAAGATGaaagattacatttcaaatagtatttcaaatttaaattaaagttccGAACAGCAGGAGTAAATCCTGTACCAAGAGTGAGAAAAACGTATttggagtatttatttattttttccagtagaacattctgatgtttttaatgtaatcatgTCTCCAAATAAAGAACTACCAACTGAGCTTTTTGGCAGGATGAAACATTGTGGGATCATTAATCTCTCCTATTAGGCATGACATTTCTCAAGTGGATTTGAGTGTTACTGTGTTTTTCACactacacaaacatttatttttcgcTGGACAAAAAATTTTAACAAATTGCACTACATAAGTAAGCAGAATTCAAGAAACACACAGCTAATTTAATGCTAAGTTGGAAACAACCTCTGCTGAACATATAAATATCATAATTTGATTGATTTCATTTAGCTTTAATAATCACACAACTGGGCAGTTGAAAAATTATGATATGCTCTATTCAATATACTTAttagattatgtttttatttaaacgtattttaaacatttacataaaaaatgaatttgaacaaaatgtatatgctttttttaaattaaattcaaatgtcaTGGGTAACATAACCCACAGTCAGGTGAGATATTGCTAAAGCTTCTGGGGATGGAACACTTCATCATAATTAAACAGCTGCATGATAGCCATTAATGTAGAAAGGGAAGAACTGACCTTTAATTGAAACTGAAGTAGACAATCAAAACTTTACTAACCCgcttgttttagttttccacAGCTTCTGCAAGTGAATGTTTCAGTTTATGAATGACAATCCCAGTGACAGTTTAGAAACGCACCCAGTCCTTCAGTTTTCCTGAAGAATTAACACAACTTATGCTCATCCCGTGACAAATTAGGACTGGAATTGTTTCCATTCATCCCTGGGGAATAGAATCACATTTCAATGCAGTAAAGGTCACCCTGACAAGAGCAGGAACTATGCAACTTCTACATGGTCTCTTTCTGCAGCACTTGGTTGTATTCCAGTCAGCAACTGGAAGAGAGGTGGCACAACATCTGCAACCTTTTGAAGGGTGCTTggtattataaaaacaatggtGCTTTTCATCATATTTAACCAACTGTCATTGCATTTTATGGtgctattaaacaaaatgaggTACAATCCTAAATTCAGTCAAACAGTATTtagctaaaaaaaatattgtatttttatatcattactttaatatatttttaatggggATGGAGcagtcttaaaaaacaaaagtgcactTTAGGTAAATAGACAGTAGATCAGTGCATTTCTGAATTACATTACTCTTGGCTGTGCCATATAAAAAACATGCAGGACAAACAAATATTCAGAGATATTAGTTATATTAGTGGCATTAGCAATGGGTAGACAGGACCTGGAGTTAAAACAGTGACTCAGGAAAGGTACAAATTCTACCAAACATCTATCGGTGCAATACAATTTTCGTATTTTGTACAACTTTTGCTTTCATACAATCTGAGTGCAGGGATTCGGAAAGACATCAAAGTGATTCAGGATCCACAAAGGCAATGAAAGCCAATCagatattaaactaaatgtttcCTAACTAATTGTTGATCTTATCAGCTCCATATGTGTCAAACAAGACCACACAGCACAAGCCAGAAGCTGTGTCAAAGGAAACATTCACTGCCAACtgctgtaaatgttatttttatacatatgtttttttttataaacagcattttgttttcctgctggtCAGTTATTCTGGAAGGAGTTTTTTGGACGAATCATTTTGTACTCATGTTATATACCCGTTACAGCACTATAATGTATTACTACAAAACAATCACcaatattaaattgtttaatattc

Function

GO: NA

KEGG:

id description
K19470 C1QTNF1_6_8; complement C1q tumor necrosis factor-related protein 1/6/8

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013169 True 3988 mRNA 0.39 3 23486345 23492834

Neighbor

gene id symbol gene type direction distance location
AMCG00013170 NA coding downstream 2546 23472533 ~ 23483799 (-)
AMCG00013164 NA coding downstream 548561 22929749 ~ 22937784 (-)
AMCG00013163 NA coding downstream 557904 22919298 ~ 22928441 (-)
AMCG00013159 tmem100,LOC102794428 coding downstream 841138 22644803 ~ 22645207 (-)
AMCG00013160 NA coding downstream 855044 22610602 ~ 22631301 (-)
AMCG00013168 LOC108435267,LOC107755502,LOC107722214,LOC107581584,LOC107702479 coding upstream 61838 23554672 ~ 23563336 (-)
AMCG00013177 gps1,LOC107654488,LOC107721507,LOC107688111 coding upstream 217866 23710700 ~ 23721512 (-)
AMCG00013178 rac3a,rac3,rac3b,LOC108436959,LOC106610298,LOC100712409 coding upstream 251912 23744746 ~ 23756601 (-)
AMCG00013176 lrrc45 coding upstream 265440 23758274 ~ 23773033 (-)
AMCG00013185 NA coding upstream 373806 23866640 ~ 23882268 (-)
G42557 NA non-coding downstream 669976 22816156 ~ 22816369 (-)
G42553 NA non-coding downstream 780008 22706066 ~ 22706337 (-)
G42544 NA non-coding downstream 911518 22574558 ~ 22574827 (-)
G42450 NA non-coding downstream 1336553 22149581 ~ 22149792 (-)
G42440 dnah9 non-coding downstream 1580748 21893624 ~ 21905597 (-)
G42704 NA non-coding upstream 286091 23778925 ~ 23779350 (-)
G42743 NA non-coding upstream 408609 23901443 ~ 23901920 (-)
G42760 NA non-coding upstream 419957 23912791 ~ 23917024 (-)
G42800 NA non-coding upstream 727817 24220651 ~ 24222738 (-)
G42993 NA non-coding upstream 1552544 25045378 ~ 25376323 (-)
AMCG00013133 wu:fd14a01,LOC101068441,LOC101079795,LOC103368359,LOC107721187 other downstream 1959513 21503849 ~ 21526832 (-)
AMCG00013131 LOC101068441,LOC106598369,LOC106594844,LOC106593081,LOC106593408,LOC104955241 other downstream 2036391 21448329 ~ 21449954 (-)
AMCG00013137 myhm86-1,LOC107373462,LOC107574740,LOC103143810,LOC108243721,LOC106527115,LOC101079795,LOC108261476,LOC101068441,LOC101071797,LOC101163414 other downstream 2064227 21411939 ~ 21422118 (-)
G42381 LOC102793686,LOC103366176,LOC105910910 other downstream 2110582 21337067 ~ 21375763 (-)
AMCG00013184 prkar1a,LOC107708993,LOC106606198 other upstream 333775 23826609 ~ 23839146 (-)
G42749 NA other upstream 351249 23844083 ~ 23847477 (-)
AMCG00013204 mafg,LOC108241257,LOC106533856 other upstream 1386807 24879641 ~ 24902428 (-)
AMCG00013216 NA other upstream 1532904 25025738 ~ 25029004 (-)
G43001 NA other upstream 1582559 25075393 ~ 25078244 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000023_00176579_00179918 C1QTNF6B, C1QTNF6 coding CI01000023 null 176256 ~ 180039 (-)