AMCG00013171


Basic Information

Item Value
gene id AMCG00013171
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 23581711 ~ 23610831 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013171
CCCAGCAGGATTGTGCCCCAGAAAATTAAAGTAGAGCAGCCAGTGTGTGACCTGTGTGTACTGCAGCCATGCTGGAGGAGGGGGACCTGGATGCCCTGTTGGCCTGCAAGGAGAGGGAGTGGAAGGAGCTGCAGGCCAGGCGTATTCAGCAGCTGGAGGGGGCGCTGCGGGATGCCAATACCCAGCTGGCCGCCGAGAAGGACAGATTCCAGCAGCTGAAGGAGGACTTTAAGTTTAACCTGCGGGTGCTGGAGGAGAGGGACCGTGACCTGGAGCACTGTGACGCCATGGCTGCCCGTCTGCAGGCCGCGgagagcaccaggcaggcagaGAGCAGCGAGCTGCGCATCCGCATCGACAAGCTGCAGGAAGCCCTGTCTGCAGAAGCGCGCAAACGAGAGGAGCTGCAGAGACAGTACCAGCAGAGGATCAGGGAGCATCGGCTTCAGCTGGAGCAAGTACAGAGTCTGAAGGACCGTGACATTCAGAAGCACCGGGATGAGTACGAGAGCCTGAAACATGAGCTGGAGCGCAAGATTCAGGAGGTGGAAGGCGAGCTGGCTCTGCAGAAACAGGAGCTGATGGTGGAGTTTGATGGTGAAATGAAGCGCCGGGAGCATGAATTCAATTTGCGGATGGATGAGATGAGTAACGTTGTGCTATCTCATGAACTTAAGGTCAAATTGCTGACCAAGGAGCTGGAGGTGCACAATAAAGCCTACAGTGAGACCCTGGAAGCACTCAGGGCTTCGGAGGATCTCTCCCGGGAGGCCCAAAAGGAGATCAAGCGCAGAGTGTGGGAGATCAAAGATGTCACCGCTGTCAAAGATGCTCGaattaaagaCCTGGAAGATAAGCTAAGTGTAATGGAAATGAAccgaaaaaaagaagaagaaatagtCAACAGAAAGCACGAGGAGCTGGACCGCTGTGCCcgagagagggaggctgccctgGCAGCAGTACGGGATGCCCACGGTGAGCAACTCCGTCAGGCAGAGAACAAGAATAGGGAGCTGCAGACCAGCCTGGACACGCTGACCATGGAGAAACGCAGGCTGGAGTGGAACCATGTGGACGCACTGAGGGAGAAGGAAGACCAGCTCGAGAAGCTTCGTAGCGAGCTGGAGACAACGCGAGCTGGCTGGGACTCTTACATTGCTCAGGTCTCGAAGGAAACCGTTTCCAAGGACATGGAGCTCCAGGCATTGGGGGAGAGGCAGTCTAAGCTGAAGGCAGAGCTGCAGAGATACAAGGTGGATGTGGAGAGGTACAAGCAGCAGCTGGTGAGTGCCGTCCAGCGGGAACAGGGCCTGGAGCAGGCACGGGTCCAGGCTGAGCTGGACTGGCAGAGGCGCTGTGAGGACGCAGAGAGAGGGCAGTACCTGAAACATGAGGAGCTCATTCAGGGCTTGACACGAGCCAGGGACCAAGTGGCAGCCGAACTGCGAGAGAAGGAGCGCGAGCTGCAGGATATGAGTGCTTTACTGCGCAGTGTGACAGCGGAGAGAGACCAGGCGGTGGCCGGGCTGCACAACAAAGGGGATTTTCCTGTCAGAGAGATGCAGGGTACAGGGGAGGGTGGCAGCTTTCCTTCAGACGAGATCCGCCGGTTACAGCAACAGAACACCAGCCTGCGTGCCGTGATGGCCGAGATGAGGAAGGACATGGATACCCTCATTGAGCAGAAAGCCACCGCCCCCAGGCCACCCCGCACTGCCGAGCCATGCGCTGAGACCAGGAGTACGACTGGCAGTGGCCTTGACTTCACACCAGAATACACCAGGTCTCtggaggaggaggtgaaggAGCTGAAGAAGAAATGCAGGAGTGTGGaggagcagctggaggaggcTCGGAGAGCTCCCAGCCCTCTCCCAGCCCCTCTCCCAGCACTCCCAGTGTCTTCAGACAACACCTACCTACAAAACCACATCCGCACTCTCAATGAGACCATAGGTGGGCTCAGAGCTGAGAAGGTGTCCAGTTCAGCAGCGTTGAAGAAGTACGAGGTGAGGGTGGCCCATCTGGAGTCTGCCCTGGTTCAGCTCACACAGCAGCTCCACTCGAAGCAGATGGAGAGCGATGAGCTACGGTTTGAGCTGGCCAATCAGAGGAAGCGCAGTGGGGCAGAGGAGGCGGGGCTGCGGCAGAGATTGGCTGCTGTGGAGATGGAGTTGGCAGGCGTGAGGCGGGAGGCGGAGGAGTACCAGAGGGGCAGCCTGCTTCAGAACCTGGAGGCGGTTGCCCTGGGCAACCAGGTCTCTGCTTTGAAGCTGGACATAGCAAGCCAGAGGGAGCCTATCGTCATTGAACAGAGCTTAATGGTCAAGCAGCTACAGGATGAGAATCTTCGATTACAGCAGCAGCTTTTGGGACAGCTTTCCGGGGGAGGCTTGTCCAGGTTAGACAGTGTCAGTGTGCCCACTTTGCGGTCCAAACTGAAGCAGGCTGTCCGCTACATCTCCCAGCTGACCCGCGACAAGCAGCAGCTGATTGAGATGGGCAACCGGCTCCGGGCCCAGCTGGCTGAAACTGGTCTGAAAGACCCGCACCGCCCTGGTAGTGTATACGAGCCCCCCAAAGGTCTCAGCTCTTTGGACTCTGAGTCTCAGACCCAGGACCCACAGAACCGCCTCTCGGCTCTAGAACGGCTACAGTACCAGCTCACCACACAGGAGCTGCAGTATGCACAGCGCGAGCAGTATAAGAAGGCCCCTATAATTGTACGCCCAAATTTCTCAGAGAGTGAGACTGGGGACAAAGGACAGACTGACAATCCGTGGGACCTGCATGCAAAGACTGGTCACCGTATTGAGAAAAGAGATGTTTCTTCACCGCCTAAGCCTCATACCCGAAACAGGAAAGAGAACACACCTCCAGAtttcagccaatcacagaggcATCTTCAGGCTGAGCCCAGCCAATTGGGCCCTGAAGGAAGACCACGCTCTGGCCAGTCACAGCCCTTGATGTCCTCTCAGGGTACAGACAGCTCTCTGCAGGACATCTTGCAGATGTCGGAGGGAGGGTCAAGTTCAACTGTCTGCACACCTCAGGATGACCATGTGAAAGGTCCTGGGGGGGTCATACTGGAGCGAGGTCCCAGTTATCCTGGTGTGGGACATTCACTAAGTGTCCAGGGGGGCAGAGTGGACATGCAGGGTAGGAAAAAGACAGGGAAACCCTCAGCTGAACCCATCAAGAAGCAAAAATATTCAGGAAGGAATCCCAAACTATCCCTAAGAAACTACAATATAAAAGACTGATAAGAGAATACACTCTAGGGTTCTAGTTGACACCGCTTTATTTATACTCCTTTTgttcttgtatatatatttgtaaattactTTTACAGACTTCATTAATCAAACAGGAATCTGAGAAGCTGTGGAACAATTAAGGCAGATAATAAGTTACTATAGTAATTTTCAATAACCACCATTGCACAATCAAATGTTGATCTACATGTCTCAGAAATATAATCAAGTGTCTTGTTTTCCTAATAAGGAATTAGATTTTGGAAAAG

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0021591 ventricular system development biological_process
GO:0021592 fourth ventricle development biological_process
GO:0007399 nervous system development biological_process
GO:0007417 central nervous system development biological_process
GO:0021510 spinal cord development biological_process
GO:0021514 ventral spinal cord interneuron differentiation biological_process
GO:0021515 cell differentiation in spinal cord biological_process
GO:0021517 ventral spinal cord development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013171 True 3529 mRNA 0.55 20 23581711 23610831

Neighbor

gene id symbol gene type direction distance location
AMCG00013167 LOC103369437 coding upstream 41497 23531951 ~ 23540214 (+)
AMCG00013166 LOC107581581,LOC108435270,LOC107684054 coding upstream 138327 23433840 ~ 23443384 (+)
AMCG00013165 NA coding upstream 170796 23401140 ~ 23410915 (+)
AMCG00013162 NA coding upstream 657981 22881908 ~ 22923730 (+)
AMCG00013161 LOC107722232 coding upstream 723060 22673202 ~ 22858651 (+)
AMCG00013172 fasn coding downstream 7306 23618137 ~ 23651153 (+)
AMCG00013173 dus1l coding downstream 42668 23653499 ~ 23681825 (+)
AMCG00013179 NA coding downstream 77987 23688818 ~ 23690170 (+)
AMCG00013174 rfng,LOC106610281,LOC107708990 coding downstream 111326 23722157 ~ 23735304 (+)
AMCG00013175 dcxr coding downstream 125832 23736663 ~ 23740597 (+)
G42619 NA non-coding upstream 21051 23554672 ~ 23560660 (+)
G42554 NA non-coding upstream 718729 22861815 ~ 22862982 (+)
G42518 NA non-coding upstream 889495 22691932 ~ 22692216 (+)
G42488 NA non-coding upstream 1011630 22514864 ~ 22570081 (+)
G42464 wdr45b non-coding upstream 1276969 22300573 ~ 22304742 (+)
G42705 NA non-coding downstream 173577 23784408 ~ 23831400 (+)
G42779 sstr5,LOC104918336,LOC102219310,LOC102291375 non-coding downstream 386963 23997794 ~ 24003887 (+)
G42780 NA non-coding downstream 396522 24007353 ~ 24007850 (+)
G42816 NA non-coding downstream 800011 24410842 ~ 24411044 (+)
G42845 NA non-coding downstream 1134692 24745523 ~ 24745754 (+)
AMCG00013147 NA other upstream 1320895 22248497 ~ 22260816 (+)
G42453 NA other upstream 1335921 22242429 ~ 22245790 (+)
G42344 LOC108412647 other upstream 2094903 21426660 ~ 21486808 (+)
AMCG00013118 LOC106594791 other upstream 2110151 21286031 ~ 21471560 (+)
AMCG00013198 NA other downstream 630438 24241269 ~ 24331854 (+)
G42846 NA other downstream 1136661 24747492 ~ 24749395 (+)
G42858 NA other downstream 1157593 24768424 ~ 24770148 (+)
AMCG00013236 NA other downstream 1902522 25513353 ~ 25521681 (+)
AMCG00013248 NA other downstream 2182574 25793405 ~ 25798013 (+)

Expression


Co-expression Network