AMCG00013173 (dus1l)


Basic Information

Item Value
gene id AMCG00013173
gene name dus1l
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 23653499 ~ 23681825 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013173
ATGCAGTCTCCAGAAACCTGCAGCACCTTGGCAAATGACATCCAGGTGCATAAACCAAGTGACCCTTGGATTGAAGAGAAGTCTCATCACACGAGACCTCAGAGCTTGCTTAAGAAGTCCCAGGAGTATcaggaaaaacagaagcagcTCAGGAGCGAGAAGACAAGGGCCTTGGAGAATAGCAAGCCTGAAAGCCACTCTGACAAAGAGAATGAGAAGGTGAAGAAAGGGAACAGAAGAAGACTCCTCATGAATGCCCCACTTCTAAACACTCACAAAGACTCAGGGGTGAGGCAGGAGCAGCAGAAAGCACAACAGAACATGATGCAGGCTGCTGCCATGCCCAAGCTGCAGGGTTTTGAGTTCTGGCGGACCACTCTGAAGGGAGCGTGCTATGTGGTGGCCCCCATGGTGGACCAGAGCGAGCTTGCCTGGAGGTTGCTGAGCCGCAGGCATGGAGCCCAGCTGTGTTACACCCCTATGCTGCACGCCCAGGTGTTCGTCCGCGACCCCAACTACCGGCGGGAGAACCTGTACAATGAGGTCAGCCCGGAGGACCGGCCTCTCATCGCACAGttttgtgcAAACGACCCAGAAGTGTTTATCCAGGCGGCACTGCTGGCTCAGGACTACTGTGATGCGATTGACCTGAACCTCGGCTGTCCTCAGATGATTGCCAAGAGAGGACACTATGGTGCCTTTCTGCAGGAGGAGTGGGACCTTCTGCAGAAGATTGTCACCATGGCCAACGAGAAGATCTCAGTGCCCATCACTTGCAAAATCCGGGTCTTCTCAGAAGTTGACAAAACAGTGCAGTATGCCACGATGCTGGAAAAAGCTGGATGCCAGTTGCTGACGGTCCACGGTCGCACCAAAGAGCAGAAAGGAGCGATGACTGGGGTGGCCAGCTGGGAGCACATTAAGGCGGTCCGgaagGCTGTGGGTATACCTGTGTTTGCCAATGGGAACATCCAGCACCTGAGTGACGTGCACCGCTGCATCGATGAGACCGGCGTGCAGGGGGTCATGAGTGCAGAGGGGAACCTCCACAACCCGGCTTTGTTCGAGGGCCGCAGTCCTCCGGTGTGGGAGATGGCGGAGGAGTACCTGGAGGTGGTCCGGCAGTATCCCTGCTCCCTATCCTACGTCCGTGCCCATCTCTTCAAAATGTGGCACCACACGCTGCAGATCTATCAAGATCTGAGAGAGGAGTTAGCCAAAGTCAAGACAATCGATGGCATGGCGGAGGTCAACAGACAGCTCAAAGAACGCTGCCAGGAGGAGATGGCTGTTCAGGCGGGGGCAGAGAAGCCGACGGGGGTCCTGCCGTTCCCTCACTGGATCTGCCAGCCCTATGTCAGACCAGGTCCAAAGGAGCAGCCGTGTGAGAATGGGAAGCCCTCGGCCTCGACCAAGCCCGTTTGTGTGAAGAGAGCCCTGGAGGTCAGTGAGGGCCAGTCGGAGTTCCTGTCCAAGAACAAGCAAAAGAAGGCGGCGCGCAACCCCAAGAAGAACTTCAACCCCGAACAGAAACCCAAATACATCAAATGTGAGCAGTGTGGAAACCCGAAGGGGAATAAATGTGTGTTCAGTCTGTGCCGAGGCTGCTGTAAGAAGAAGGCTTACAAGGAAATGGCTGACTGCCTAGGTCACGGGTTGTTGTTCAAGACCAAGCACGAGAAGTCTCTGAGATTGAAGGCCGGAGCCGTAGAGGGACCCGAAAACGGGGAGCGGGCTGGTGGCAAAGTCCAGAAGGAGGCCTTGGCAGCTGACCGGGACAGCAGGGGAGATGACCCTGTGGCCTAA

Function

symbol description
dus1l Predicted to enable tRNA dihydrouridine synthase activity. Predicted to act upstream of or within tRNA processing. Orthologous to human DUS1L (dihydrouridine synthase 1 like).

NR:

description
PREDICTED: LOW QUALITY PROTEIN: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like

GO:

id name namespace
GO:0002943 tRNA dihydrouridine synthesis biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0017150 tRNA dihydrouridine synthase activity molecular_function

KEGG:

id description
K05542 DUS1; tRNA-dihydrouridine synthase 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013173 True 1806 mRNA 0.56 14 23653499 23681825

Neighbor

gene id symbol gene type direction distance location
AMCG00013172 fasn coding upstream 2346 23618137 ~ 23651153 (+)
AMCG00013171 NA coding upstream 42668 23581711 ~ 23610831 (+)
AMCG00013167 LOC103369437 coding upstream 113285 23531951 ~ 23540214 (+)
AMCG00013166 LOC107581581,LOC108435270,LOC107684054 coding upstream 210115 23433840 ~ 23443384 (+)
AMCG00013165 NA coding upstream 242584 23401140 ~ 23410915 (+)
AMCG00013179 NA coding downstream 6993 23688818 ~ 23690170 (+)
AMCG00013174 rfng,LOC106610281,LOC107708990 coding downstream 40332 23722157 ~ 23735304 (+)
AMCG00013175 dcxr coding downstream 54838 23736663 ~ 23740597 (+)
AMCG00013183 NA coding downstream 94121 23775946 ~ 23802064 (+)
AMCG00013182 NA coding downstream 126418 23808243 ~ 23825285 (+)
G42619 NA non-coding upstream 92839 23554672 ~ 23560660 (+)
G42554 NA non-coding upstream 790517 22861815 ~ 22862982 (+)
G42518 NA non-coding upstream 961283 22691932 ~ 22692216 (+)
G42488 NA non-coding upstream 1083418 22514864 ~ 22570081 (+)
G42464 wdr45b non-coding upstream 1348757 22300573 ~ 22304742 (+)
G42705 NA non-coding downstream 102583 23784408 ~ 23831400 (+)
G42779 sstr5,LOC104918336,LOC102219310,LOC102291375 non-coding downstream 315969 23997794 ~ 24003887 (+)
G42780 NA non-coding downstream 325528 24007353 ~ 24007850 (+)
G42816 NA non-coding downstream 729017 24410842 ~ 24411044 (+)
G42845 NA non-coding downstream 1063698 24745523 ~ 24745754 (+)
AMCG00013147 NA other upstream 1392683 22248497 ~ 22260816 (+)
G42453 NA other upstream 1407709 22242429 ~ 22245790 (+)
G42344 LOC108412647 other upstream 2166691 21426660 ~ 21486808 (+)
AMCG00013118 LOC106594791 other upstream 2181939 21286031 ~ 21471560 (+)
AMCG00013198 NA other downstream 559444 24241269 ~ 24331854 (+)
G42846 NA other downstream 1065667 24747492 ~ 24749395 (+)
G42858 NA other downstream 1086599 24768424 ~ 24770148 (+)
AMCG00013236 NA other downstream 1831528 25513353 ~ 25521681 (+)
AMCG00013248 NA other downstream 2111580 25793405 ~ 25798013 (+)

Expression


Co-expression Network