AMCG00013174 (rfng,LOC106610281,LOC107708990)


Basic Information

Item Value
gene id AMCG00013174
gene name rfng,LOC106610281,LOC107708990
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 23722157 ~ 23735304 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013174
GTAAACCCAGCCCATGACCGCCAATTCCCAAAACCACAGGTCTTGAAGAAAGGGATTTGCAATCAATACTTTCAGACAGAGGGCGCTGAGTTTCAAAGGCCGGTGCGCTTGCCCTGCCACACCGACCAGCACAGGGTTAATAATCCGAATCCAAGTGTTTATCCTCGGGCAGGCAGGGGTTAGTGTGCGCTGTAACAACAGGGCAAGGGGAAAGCACGCATTTTCTCCATCCAGAGGCAGACATCggcaggagaaggagaaagagaccAGTCTTCCCTGCGGTCTCAGCCGAAACCAAGTGCTGGTGGTGATGGTAGTTTAACTTGCGGCTGAAGAGACAAAGTTAAAAcgaaacaaaaggaaaggacGAGGATGGATCTGCCCAGTAAGCCTTGATAGCAGCATCTCGTTTTGTGGCCGCAATGAGTTTCGAGAGTCTTCTGTTTATTGTGGTCAAGTTGTAACTTTGATGCTTCATACTTACGCGACCATGAGTAAACGGGCACTTCTTGGACACAGTGGTATGTAAGGAAAATGGGCAGCAGAGGAAAGTCCGAGGCTGGGCCCGGCGGCTGAGTCCAGCTCTAGAAGAATGCACTTGTCCCGGGTTGGAATAAGCAAGCTCTGCTTCCTGCTGTCCCTGGCCTTCTGTGCCTTCCTGCTGCTTTTGATCCCCAGCCTGCAGCCCCCACAGCACCCCATCGACGTCCCGCACCCTCGACCCCATGGCAGGACCACGGGGACGAGAGGGGGAGGGGCCAGCCAGCAGCAAGGCCGCTTGGGATCTTTAGAACTCCCTGTCACAGCTCAGGTGACGGGCAATGACAGTTTGGTGCCGCCCAGTGGAAACGGAGAAATGAAGGATGGGGACACGGTAGAGGGAAACGCAGGTGGAGTGTTTAAAGCCCAAGGAGATGGACGAACAAGCCTGGTCACAGGTAAAAGGGAGACTGCGCAGTTTTTGGGTGACGACGGTCATCAGGGTAGACTCCCTCATCCTCGAGATCGTCTGGAGCTGGGAGACATATTTATCGCGGTGAAAACGACAAGGAAATACCACAAGTCTAGGGTGGACCTGCTGTTCCAGACCTGGATTTCCAGAGCCAAGGAGCAGaccTTTATTTTCACAGACGGAGAGGACAAGGAGCTCAGAATGAAAGCAGGAGACAACATGATCAACACCAACTGCTCGGCAGCGCACACTCGGCAGGCCTTGTGCTGTAAGATGTCAGTGGAGTACGACAAGTTCATCGAGTCGCAGAGGAAGTGGTTCTGCCATGTGGATGATGACAACTACGTGATCCTGCCCAGTCTGCTGCGACTCCTGTCATCCTACTCCCACACCCAGGACATCTACCTGGGTCGGCCCAGCCTGGACCACCCGATCGAGGCTGCGGAGAGGGTCAAGAGCGATGGATCGACATCTGTGAAGTTCTGGTTTGCCACAGGAGGTGCAGGGTTCTGCATCAGCCGGGGTCTGGCGCTCAAAATGAGCCCCTGGGCCAGCCTGGGAAACTTTATCAGCACGGCAGAGAAGATTCGTCTCCCTGACGACTGCACCATTGGTTACATCATCGAAGCTCTGCTGGAGGTCGCCATGACGCATACTCGTCTCTTCCACTCCCACCTGGAGAACCTGCAGAGGCTGCCCACCGACACCGTGCTCAGACAGGTGACCCTGAGCTACGGTGGCTATGAGAACCGAAGGAACGTGGTCAGTATTGGTGGATCTTTCTCTCTGGCAGAGGACCCCTCAAGGTTCAAGACCGTCCACTGCCTTCTCTTCCCGGATACAGAGTGGTGTCCCCGCAAAAAGCTCCCCTGACCCCCGGCCTCTATTGCTAACCCGACCCCGTCACCTAGCCCTCTTCCCCTGGACACCTGTGCAGCAGGAGACTCGCAGAGCTGTCAGGTCAGGCTTGGGGGGCCTTGTTGCTGGAAactgctctgctgctctctgGCCTTTCTCCAGAGCTCCCACTCCGACACGGTCTCAGCCGCGGTCCTCAGAGCACACTGCTGGGAACACGGTGCGGCAGCTAACGGTGATGCACTGCACTTTGCCtttgacttttattttgttttgttattgatgCATCTCCTTCATCTCAGTGACTTCACTGCACAATATCTGAACACAGAGGGAGAAGAAAAGGTACTTCTGTGAAGATCTTGGTCCagatgtaatattaatttattgaaagaGTCTCGAGATCAcagtgctgcttttattttttatttttttagcacaACAGCCAATGAGGTCAGAAGTAAACATTCTCAGCAGGAGAAAATGTAACCATAGAAGTAAAACAAAGACCGCTCAGAACCCGGTCATCTGTGGCTATTTCACAATGAAGACAGTGTTGTTCCTTTCCTTTGTCATTGTTCTTGTTGCTAAATAATTCCCATTCTTAATTGCTGAAGACTCcaataacagaaaacattattCAGAGACGCATCCATTTTGACCGGAGAGACACCATTCTCTGCCTTAAAACTGATTCAGTTCCTGcaacagaaaatattgaattaagttatttcatttaagattttatttcagcATATGAAGActgaaatggttttgttttttctcccatttAAAAGAAATGGTGCTAATAATATTTCCctgggagaaaataaaagcttAATAATTTATGCCCCTAACCATAAAATACAGAGCAGGCCAGGACTGGCTTGTTATTTCCATGGTTATTACAGGGCATTGACagaaatgaactatatacatgtattcatgtttgttttcctctgtataATTTTCCAAGCCAGTCTGTATTCTTCTTCTTGCAGTTCTAGCATGTTGCCTTGACTCAATCTCCATGTGCTCTAGAGCTCCCTTTGAAGGAGTCTACACACCAGAACTAAACTTCCCTGACTCCTCACTGCCGGCCAGTGGAGTGAAATGTCTCTTTCACACCTAGCTTgactgtttctttgtttttattctttgctATGATTTAAGATGTTTTCTTCCTATGAATAAAGCATGCTGCCGAATACGTGAAAACCAAACTGGTGGCAAATCTCTGTTCTGGTCCGCTATTTACCTGTGTAACTGGGCATTGTGGAGCTCTCACACCCTCTTCTGTTGGCACAAACGGTCACCCCCAGGGGTGGGCCTCCTGTTAGGAGGAaacagggaaagagagaggaattCCCAACTCATGCAATACCGTaaagagattatatatttaggGGAGGGAAACCGTAGCGCAAGGAAAGAGAACAGCCACACAACTGTGGTGTGCTTTTCACATATATGAAGCAataactgcagagagagagatggacgtCATTCTCACTGGGAGTGGAATTACATTGCACTGTTCTTTTCAGTCCCCGTGTTGAGAGGGATCAGCACAGCAGAGCAAGCAATTAAGAATAAAGCGTTGCACCATGGCTTGCTTCAGTGGTTTATGGAGTATATCTgtcattctttttttacatttttctaacAGAcccctccagctcctcctggcACTCAGCAGCTGGGGGAGATTGCCTCTGCATTAGTGCAAGCTGATATCTTGAAGGGGATTGCATACTTTCATCACATATGTTCAGCAACTCATCAGCTTATGTATCACCTTGTAACTGCTTCAAGCAAAGCACAATGTGTATTGCTACATTTTTCAGAACACTATTTGATCTTTAATGCTACataatgcaaaaagaaaacaaacaagaacgaAAATCTCAACAACTTAAAACAAACCTATAGAAAACTAAAAGAGAAAGAGCTGCCAACTAAACTGACTAAGCTAATCTGCTAATTGTCTTCCCTTGTGGATTTTGTTAATAGTggaaaaactgtatttaattacagCAGCATTGCCAAAGAGCAAGTCTGAGCCCACGGAAGCCTGGCAGAGGAGGAGAAGTTGCCTGCCGGCTCCGTGGTGCAGCAGTGGCACCGGTAACCAGCCAAACACTGTGTccagaataaaaaacacaagtGCTCACCATGGCGACACGGCATCATTCACTCTCACTGTTTAAACTCCGGAGAGAAAACAATAGCGGAGAGTGGTACTGTTGTTACCAGACATACTGTCGCTTGGACCAAACATGTTGCACAGGAAATAAAACTCTTAAAAAGCTGCATGCACAGTTCTTTGGGGAGTTATAAAAGTTATATAATTTATGCTTGTTGGATAGTTTTCTCGTTATTATAAGGGAAATGGCAATACCATTTGGAAGACTTTTCGGAATCTTCCTaacaaaatctgtaaaacaaataacgGGTTGTAAGCTGCAGGGGTACATTTTTCCAAGTTTTGACTAAGAGCGAGTGGTTAGTGAAATTGGAGTGGAGCAGTACATATGCATGGAAATGTGGCCAAAGTCTGTATAAGTATATATGCAAAAA

Function

symbol description
rfng Predicted to enable O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase activity. Acts upstream of or within brain segmentation; fourth ventricle development; and rhombomere boundary formation. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of Golgi membrane. Is expressed in hindbrain. Orthologous to human RFNG (RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase).

NR:

description
PREDICTED: beta-1,3-N-acetylglucosaminyltransferase radical fringe-like

GO:

id name namespace
GO:0007219 Notch signaling pathway biological_process
GO:0030154 cell differentiation biological_process
GO:0035284 brain segmentation biological_process
GO:0021592 fourth ventricle development biological_process
GO:0021654 rhombomere boundary formation biological_process
GO:0030173 integral component of Golgi membrane cellular_component
GO:0046872 metal ion binding molecular_function
GO:0033829 O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase activity molecular_function

KEGG:

id description
K05948 FNG; fringe

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013174 True 4390 mRNA 0.47 9 23722157 23735304

Neighbor

gene id symbol gene type direction distance location
AMCG00013179 NA coding upstream 31987 23688818 ~ 23690170 (+)
AMCG00013173 dus1l coding upstream 40332 23653499 ~ 23681825 (+)
AMCG00013172 fasn coding upstream 71004 23618137 ~ 23651153 (+)
AMCG00013171 NA coding upstream 111326 23581711 ~ 23610831 (+)
AMCG00013167 LOC103369437 coding upstream 181943 23531951 ~ 23540214 (+)
AMCG00013175 dcxr coding downstream 1359 23736663 ~ 23740597 (+)
AMCG00013183 NA coding downstream 40642 23775946 ~ 23802064 (+)
AMCG00013182 NA coding downstream 72939 23808243 ~ 23825285 (+)
AMCG00013180 NA coding downstream 105290 23840594 ~ 23847430 (+)
AMCG00013181 wipi1,LOC107719990,LOC107590389,LOC107688112,LOC107721503 coding downstream 113871 23849175 ~ 23864196 (+)
G42619 NA non-coding upstream 161497 23554672 ~ 23560660 (+)
G42554 NA non-coding upstream 859175 22861815 ~ 22862982 (+)
G42518 NA non-coding upstream 1029941 22691932 ~ 22692216 (+)
G42488 NA non-coding upstream 1152076 22514864 ~ 22570081 (+)
G42464 wdr45b non-coding upstream 1417415 22300573 ~ 22304742 (+)
G42705 NA non-coding downstream 49104 23784408 ~ 23831400 (+)
G42779 sstr5,LOC104918336,LOC102219310,LOC102291375 non-coding downstream 262490 23997794 ~ 24003887 (+)
G42780 NA non-coding downstream 272049 24007353 ~ 24007850 (+)
G42816 NA non-coding downstream 675538 24410842 ~ 24411044 (+)
G42845 NA non-coding downstream 1010219 24745523 ~ 24745754 (+)
AMCG00013147 NA other upstream 1461341 22248497 ~ 22260816 (+)
G42453 NA other upstream 1476367 22242429 ~ 22245790 (+)
G42344 LOC108412647 other upstream 2235349 21426660 ~ 21486808 (+)
AMCG00013118 LOC106594791 other upstream 2250597 21286031 ~ 21471560 (+)
AMCG00013198 NA other downstream 505965 24241269 ~ 24331854 (+)
G42846 NA other downstream 1012188 24747492 ~ 24749395 (+)
G42858 NA other downstream 1033120 24768424 ~ 24770148 (+)
AMCG00013236 NA other downstream 1778049 25513353 ~ 25521681 (+)
AMCG00013248 NA other downstream 2058101 25793405 ~ 25798013 (+)

Expression


Co-expression Network