AMCG00013178 (rac3a,rac3,rac3b,LOC108436959,LOC106610298,LOC100712409)


Basic Information

Item Value
gene id AMCG00013178
gene name rac3a,rac3,rac3b,LOC108436959,LOC106610298,LOC100712409
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 23744746 ~ 23756601 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013178
ATGCAGGCCATTAAGTGTGTGGTTGTGGGCGACGGTGCTGTGGGTAAGACCTGCCTGCTCATCAGTTACACCACCAATGCCTTCCCCGGAGAATACATCCCCACTGTcTTTGATAACTACTCTGCCAATGTCATGGTGGATGGGAAGCCCGTGAACCTGGGATTATGGGATACAGCAGGACAAGAGGACTATGACCGCCTTAGACCGCTCTCCTACCCACAGACGGACGTGTTCTTGATATGCTTTTCTCTGGTCAGCCCGGCGTCTTTTGAAAACGTCCGAGCAAAGCTGGACCTTCGGGACGATAAGGACACCATCGAGCGCCTTCGAGACAAGAAACTGGCACCCATCACCTACCCCCAGGGTCTGGCCATGGCCCGCGAGATTGGTGCTGTGAAGTACCTCGAGTGCTCAGCTCTGACCCAGCGTGGCCTGAAGACTGTGTTCGACGAGGCCATCCGAGCTGTCTTGTGTCCCCCACCCGTCAAAAAGCGCGGCAAGAAGTGTACCGTCTTCTGA

Function

symbol description
rac3a Predicted to enable GTP binding activity; GTPase activity; and protein kinase binding activity. Predicted to be involved in several processes, including cytoskeleton organization; regulation of actin cytoskeleton organization; and regulation of cell shape. Predicted to act upstream of or within small GTPase mediated signal transduction. Predicted to be active in several cellular components, including cell cortex; cytoplasmic vesicle; and neuron projection. Is expressed in blastomere; hatching gland; nervous system; somite; and trigeminal placode. Orthologous to human RAC3 (Rac family small GTPase 3).
rac3b Predicted to enable GTP binding activity; GTPase activity; and protein kinase binding activity. Acts upstream of or within actomyosin structure organization and rhombomere boundary formation. Predicted to be active in several cellular components, including cell cortex; cytoplasmic vesicle; and neuron projection. Is expressed in rhombomere. Orthologous to human RAC3 (Rac family small GTPase 3).
rac3 Enables GTPase activity and calcium-dependent protein binding activity. Involved in several processes, including Wnt signaling pathway; cell projection assembly; and positive regulation of cell adhesion. Located in several cellular components, including growth cone; neuronal cell body; and perinuclear region of cytoplasm. Part of filamentous actin.

NR:

description
ras-related C3 botulinum toxin substrate 3

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013178 True 519 mRNA 0.56 6 23744746 23756601

Neighbor

gene id symbol gene type direction distance location
AMCG00013177 gps1,LOC107654488,LOC107721507,LOC107688111 coding downstream 23234 23710700 ~ 23721512 (-)
AMCG00013168 LOC108435267,LOC107755502,LOC107722214,LOC107581584,LOC107702479 coding downstream 181410 23554672 ~ 23563336 (-)
AMCG00013169 NA coding downstream 251912 23486345 ~ 23492834 (-)
AMCG00013170 NA coding downstream 260947 23472533 ~ 23483799 (-)
AMCG00013164 NA coding downstream 806962 22929749 ~ 22937784 (-)
AMCG00013176 lrrc45 coding upstream 1673 23758274 ~ 23773033 (-)
AMCG00013185 NA coding upstream 110039 23866640 ~ 23882268 (-)
AMCG00013190 NA coding upstream 146317 23902918 ~ 23912316 (-)
AMCG00013191 LOC107721501,LOC107688114,LOC107590387,LOC107601276,LOC107654495 coding upstream 160599 23917200 ~ 23927578 (-)
AMCG00013189 LOC108438014,LOC105012792,LOC105899987,LOC107719992,LOC107654495 coding upstream 185110 23941711 ~ 23948688 (-)
G42557 NA non-coding downstream 928377 22816156 ~ 22816369 (-)
G42553 NA non-coding downstream 1038409 22706066 ~ 22706337 (-)
G42544 NA non-coding downstream 1169919 22574558 ~ 22574827 (-)
G42450 NA non-coding downstream 1594954 22149581 ~ 22149792 (-)
G42440 dnah9 non-coding downstream 1839149 21893624 ~ 21905597 (-)
G42704 NA non-coding upstream 22324 23778925 ~ 23779350 (-)
G42743 NA non-coding upstream 144842 23901443 ~ 23901920 (-)
G42760 NA non-coding upstream 156190 23912791 ~ 23917024 (-)
G42800 NA non-coding upstream 464050 24220651 ~ 24222738 (-)
G42993 NA non-coding upstream 1288777 25045378 ~ 25376323 (-)
AMCG00013133 wu:fd14a01,LOC101068441,LOC101079795,LOC103368359,LOC107721187 other downstream 2217914 21503849 ~ 21526832 (-)
AMCG00013131 LOC101068441,LOC106598369,LOC106594844,LOC106593081,LOC106593408,LOC104955241 other downstream 2294792 21448329 ~ 21449954 (-)
AMCG00013137 myhm86-1,LOC107373462,LOC107574740,LOC103143810,LOC108243721,LOC106527115,LOC101079795,LOC108261476,LOC101068441,LOC101071797,LOC101163414 other downstream 2322628 21411939 ~ 21422118 (-)
G42381 LOC102793686,LOC103366176,LOC105910910 other downstream 2368983 21337067 ~ 21375763 (-)
AMCG00013184 prkar1a,LOC107708993,LOC106606198 other upstream 70008 23826609 ~ 23839146 (-)
G42749 NA other upstream 87482 23844083 ~ 23847477 (-)
AMCG00013204 mafg,LOC108241257,LOC106533856 other upstream 1123040 24879641 ~ 24902428 (-)
AMCG00013216 NA other upstream 1269137 25025738 ~ 25029004 (-)
G43001 NA other upstream 1318792 25075393 ~ 25078244 (-)

Expression


Co-expression Network