AMCG00013190


Basic Information

Item Value
gene id AMCG00013190
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 23902918 ~ 23912316 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013190
ATGAACCCAGACGAACGGTCGACACGAGACCATTTCAGCAAGGGCGTGCATGTGCTGTATGAGCGACACCTGAGCAGTGTGTGTGCGATCTGTGACAGGATGGAGCGGCGAGCTATGGAGCAGTGTGGAGAGCTGCAGGCGGCTGCGGTGTCTGTGCGCTGGCTAACCACAGGCACGCTATGCAGCATCTGCGTGTGCAGCCTCATTTTCCAGGAGCCGGCTAGAGAGAGGATAGGTGAAATGCAGGTGATCCAGCATTCGCCAGAGAAGCTGCAGGTTGCTCTGGTCTCCTCTCGCCGGGACCTGGTGGAACGCTATCAGAAGTTCAGCCGGGAGGAACGAAGGCTGCTGGAAGAAGGGCTGTACCCTGACAGCACCTTGTTTGGGCCCATCACCGTGCACTCGGACTCTGATTGGATCCGCTCGCACCCGGAGCCCCCGCAGGATTTCCTGGAGTTCTACAGCAACCCCTACCGCAGCACGCCCGTCAAAGGCCGCAGCACCGTCTACATCCAGACTGTGGGCTCGTTTGGCGAGGGGGATGCGGTGTCTCGGCAGTATGTGTGTTGGCTGCAGGAGTACTGCGAGGCCTTCTACTACGGGTTGGCCGTGAAAGTCCTGGAGCCTGTCCCCGTGTCAGCCACCGGCTGTGCCTTCAGAGTCAATGACAGCACTCGCAACCTGCAGATACATGCTGGTGATTTACTGTGCTATTTGAAGAAGAGAAAGCCCAAAGATGCCTTCTGCATTGTGGGCATCACCATGATCGACCTTTACCCCCGAGACTCCTGGAACTTTGTGTTTGGCCAAGCGTCCCTCACTGAAGGAATGGGCATCTTCAGCTTCGCCCGGTACGATGACAACTTCTACAGCAGGAGCTACAAAGGGCGCCTGTGGAAGGGCTGCAAGCTGTCCCCGGGGGATTACTCTGTGTTCAGTGGCTACTACATACCCCCCATCACCAGCTCCCTGCTCCTGCGCTCCTGCAAGACCCTGACCCATGAGATTGGCCACATCTTTGGGATAAAGCACTGCCAGTGGCTGAAGTGTGTAATGCAGGGCTCCAATCACCTGGAGGAGTCGGACCGCCGCCCCCTCGACCTCTGTCCTGTGTGTCTCCGCAAACTGCAGGCTGCCACGGGCTTCAAGATGGCAGAGCGGTACAAGGTGGGCTTTGCTGCGATGGATTGAAGATGGATCGTCCAGCGGGGAACGAAGATCAGCCACAGATTCGGGCCCTCCATCATTCAAACCCACAGAGGCATTCGAAGAGTCCAGACAGTGGCTGCGGAAGTGCCTGTGTGTGCTGGAGGATGAGATCTTTTAACCTTCCGTCATGCATGTTCTACAGCAGGgggccaaccctgttcctgcaGGGTGTACAGGCTTCTCAAAATTATCATTACCTTGAACACAAGGTAACTGACTAATTAAGCCCACTTCTTGAAACAGTTAAGAAGTTAATGGTtaatggataaaacaaaaaacaggagacactgtggctctccaggaccagtaAGGTTCCTAGTAGTCGGTCACACAATGGTCAGTCATCACCTTCAGCGATGCAGAACAGCCAATGACTGTCATGGCaccatacaccgatcagccataacattttgaccacctgcctaatattgtgtgggTCCCC

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0008237 metallopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K06974 amzA, AMZ2, AMZ1; archaemetzincin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013190 True 1651 mRNA 0.55 8 23902918 23912316

Neighbor

gene id symbol gene type direction distance location
AMCG00013185 NA coding downstream 20650 23866640 ~ 23882268 (-)
AMCG00013176 lrrc45 coding downstream 129885 23758274 ~ 23773033 (-)
AMCG00013178 rac3a,rac3,rac3b,LOC108436959,LOC106610298,LOC100712409 coding downstream 146317 23744746 ~ 23756601 (-)
AMCG00013177 gps1,LOC107654488,LOC107721507,LOC107688111 coding downstream 181406 23710700 ~ 23721512 (-)
AMCG00013168 LOC108435267,LOC107755502,LOC107722214,LOC107581584,LOC107702479 coding downstream 339582 23554672 ~ 23563336 (-)
AMCG00013191 LOC107721501,LOC107688114,LOC107590387,LOC107601276,LOC107654495 coding upstream 4884 23917200 ~ 23927578 (-)
AMCG00013189 LOC108438014,LOC105012792,LOC105899987,LOC107719992,LOC107654495 coding upstream 29395 23941711 ~ 23948688 (-)
AMCG00013192 NA coding upstream 72811 23985127 ~ 23995256 (-)
AMCG00013193 sstr5,LOC104918336,LOC102219310,LOC103393002,LOC102291375 coding upstream 90410 24002726 ~ 24003841 (-)
AMCG00013194 NA coding upstream 110061 24022377 ~ 24023420 (-)
G42743 NA non-coding downstream 998 23901443 ~ 23901920 (-)
G42704 NA non-coding downstream 123568 23778925 ~ 23779350 (-)
G42557 NA non-coding downstream 1086549 22816156 ~ 22816369 (-)
G42553 NA non-coding downstream 1196581 22706066 ~ 22706337 (-)
G42544 NA non-coding downstream 1328091 22574558 ~ 22574827 (-)
G42760 NA non-coding upstream 475 23912791 ~ 23917024 (-)
G42800 NA non-coding upstream 308335 24220651 ~ 24222738 (-)
G42993 NA non-coding upstream 1133062 25045378 ~ 25376323 (-)
G43011 NA non-coding upstream 1224460 25136776 ~ 25139743 (-)
G43040 NA non-coding upstream 1377154 25289470 ~ 25351738 (-)
G42749 NA other downstream 55441 23844083 ~ 23847477 (-)
AMCG00013184 prkar1a,LOC107708993,LOC106606198 other downstream 63772 23826609 ~ 23839146 (-)
AMCG00013133 wu:fd14a01,LOC101068441,LOC101079795,LOC103368359,LOC107721187 other downstream 2376086 21503849 ~ 21526832 (-)
AMCG00013131 LOC101068441,LOC106598369,LOC106594844,LOC106593081,LOC106593408,LOC104955241 other downstream 2452964 21448329 ~ 21449954 (-)
AMCG00013137 myhm86-1,LOC107373462,LOC107574740,LOC103143810,LOC108243721,LOC106527115,LOC101079795,LOC108261476,LOC101068441,LOC101071797,LOC101163414 other downstream 2480800 21411939 ~ 21422118 (-)
AMCG00013204 mafg,LOC108241257,LOC106533856 other upstream 967325 24879641 ~ 24902428 (-)
AMCG00013216 NA other upstream 1113422 25025738 ~ 25029004 (-)
G43001 NA other upstream 1163077 25075393 ~ 25078244 (-)
AMCG00013223 tk1,kith,LOC102792372 other upstream 1249841 25162157 ~ 25166773 (-)
G43070 NA other upstream 1603764 25516080 ~ 25516963 (-)

Expression


Co-expression Network