AMCG00013193 (sstr5,LOC104918336,LOC102219310,LOC103393002,LOC102291375)


Basic Information

Item Value
gene id AMCG00013193
gene name sstr5,LOC104918336,LOC102219310,LOC103393002,LOC102291375
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 24002726 ~ 24003841 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013193
ATGGATCTTGGGATATTCCACGCCCTCCCCAACCTGACAGACCCCTGGATGTACGATGGCTTAAATGAGTCAGCCAACACCACGGGAAGCGACACCCACAACTTCACTGACCACCACTTTAACAAGACCAGCACTGTGGTCATTACCTTCATGTACTTCGTGGTGTGCGCGGTGGGGCTTTGTGGGAACACCTTGGTTATCTATGTCATCCTACGCTACGCCAAGATGAAAACAGTCACCAACATCTACATCCTGAACTTGGCAGTTGCTGACGAGCTCTTCATGTTGGGGCTGCCCTTCATTGCCATACAGTCCGCCTTCGTCCACTGGCCCTTTGGACAAGCCCTTTGTCGCATTGTCATGACAGTGGATGGGCTGAACCAGTTTACCAGTATCTTCTGCCTGACAGTGATGAGCATTGACAGATACCTGGCTGTGGTCCATCCCATCAAGTCCACCAAGTGGAGGAAGCCTCGGATGGCCAAGATGATCAACCTGGCGGTCTGGATAATCTCTGTGGTCGTCAATCTGCCCATTATGATCTACAGTGGATTGCTGACCAAGCACAATGTGAGCAGCTGCACTATCATCTGGCCTGACCCTCCAGAGGCATATTACACTGGCTTCATGTTCTACACCTTCTTTCTAGGATTCTTTCTGCCCCTGACTGTCATCTGCCTCTGCTACCTGCTCATCATCATCAAAGTGAAGTCCTCTGGGATCCGGGTGGGCTCCTCCAAGAGGAAGAAGTCAGAGAGGAAGGTCACCCGCATGGTCTCCATTGTGGTGGCAGTTTTCGTGTTCTGCTGGCTGCCCTTCTATGTCTTCAACGTCACCTCTGTGACAGGCACCATTCAAACAACCCCCGTGCTGAAGAGCACCTTCGACTTTGTGGTGGTTTTGGGCTACGCCAACAGCTGTGCAAACCCCATCCTCTATGCCTTCTTGTCAGAGAACTTCAAGAAGAGCTTTCAGAATGTGCTGTGTCTCAAGAAGGTGGGGGGCCTGGATGATATAGACAGGAGTGACAGTCGACAGGACAAAACCCGGATGATGAACGAtgccacagaaacacaaagcactCTGCTGAACGGGGACCTGCAGACCAGCATCTAA

Function

symbol description
sstr5 Predicted to enable neuropeptide binding activity and somatostatin receptor activity. Predicted to be involved in cellular response to glucocorticoid stimulus; neuropeptide signaling pathway; and regulation of insulin secretion. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection. Predicted to be integral component of plasma membrane. Human ortholog(s) of this gene implicated in bipolar disorder. Orthologous to human SSTR5 (somatostatin receptor 5).

NR:

description
PREDICTED: somatostatin receptor type 5

GO: NA

KEGG:

id description
K04218 SSTR2; somatostatin receptor 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013193 True 1116 mRNA 0.52 1 24002726 24003841

Neighbor

gene id symbol gene type direction distance location
AMCG00013192 NA coding downstream 7470 23985127 ~ 23995256 (-)
AMCG00013189 LOC108438014,LOC105012792,LOC105899987,LOC107719992,LOC107654495 coding downstream 54038 23941711 ~ 23948688 (-)
AMCG00013191 LOC107721501,LOC107688114,LOC107590387,LOC107601276,LOC107654495 coding downstream 75148 23917200 ~ 23927578 (-)
AMCG00013190 NA coding downstream 90410 23902918 ~ 23912316 (-)
AMCG00013185 NA coding downstream 120458 23866640 ~ 23882268 (-)
AMCG00013194 NA coding upstream 18536 24022377 ~ 24023420 (-)
AMCG00013199 sox9,LOC106589342,LOC106579008,LOC106606426,LOC100135781 coding upstream 400497 24404338 ~ 24408807 (-)
AMCG00013201 NA coding upstream 717718 24721559 ~ 24778233 (-)
AMCG00013205 LOC105012035,LOC107756032,LOC102797349,LOC107745977,LOC101487969,LOC102294156,LOC107704417,LOC106591843,LOC104930253 coding upstream 797171 24801012 ~ 24830971 (-)
AMCG00013206 LOC105013038,LOC108437168,LOC103356210 coding upstream 841789 24845630 ~ 24862556 (-)
G42760 NA non-coding downstream 85702 23912791 ~ 23917024 (-)
G42743 NA non-coding downstream 100806 23901443 ~ 23901920 (-)
G42704 NA non-coding downstream 223376 23778925 ~ 23779350 (-)
G42557 NA non-coding downstream 1186357 22816156 ~ 22816369 (-)
G42553 NA non-coding downstream 1296389 22706066 ~ 22706337 (-)
G42800 NA non-coding upstream 216810 24220651 ~ 24222738 (-)
G42993 NA non-coding upstream 1041537 25045378 ~ 25376323 (-)
G43011 NA non-coding upstream 1132935 25136776 ~ 25139743 (-)
G43040 NA non-coding upstream 1285629 25289470 ~ 25351738 (-)
G43042 NA non-coding upstream 1362425 25366266 ~ 25424074 (-)
G42749 NA other downstream 155249 23844083 ~ 23847477 (-)
AMCG00013184 prkar1a,LOC107708993,LOC106606198 other downstream 163580 23826609 ~ 23839146 (-)
AMCG00013133 wu:fd14a01,LOC101068441,LOC101079795,LOC103368359,LOC107721187 other downstream 2475894 21503849 ~ 21526832 (-)
AMCG00013131 LOC101068441,LOC106598369,LOC106594844,LOC106593081,LOC106593408,LOC104955241 other downstream 2552772 21448329 ~ 21449954 (-)
AMCG00013137 myhm86-1,LOC107373462,LOC107574740,LOC103143810,LOC108243721,LOC106527115,LOC101079795,LOC108261476,LOC101068441,LOC101071797,LOC101163414 other downstream 2580608 21411939 ~ 21422118 (-)
AMCG00013204 mafg,LOC108241257,LOC106533856 other upstream 875800 24879641 ~ 24902428 (-)
AMCG00013216 NA other upstream 1021897 25025738 ~ 25029004 (-)
G43001 NA other upstream 1071552 25075393 ~ 25078244 (-)
AMCG00013223 tk1,kith,LOC102792372 other upstream 1158316 25162157 ~ 25166773 (-)
G43070 NA other upstream 1512239 25516080 ~ 25516963 (-)

Expression


Co-expression Network