AMCG00013199 (sox9,LOC106589342,LOC106579008,LOC106606426,LOC100135781)


Basic Information

Item Value
gene id AMCG00013199
gene name sox9,LOC106589342,LOC106579008,LOC106606426,LOC100135781
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 24404338 ~ 24408807 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013199
CAACTGCACAACCTGGAAATAAGCCCGACAGGAAcatttctctcctctttctgAACGTTTCTATTCCTTTTGCAAGAAACAGTGCCCATGCAGTCCCGCCGTGTTTGAGTGCATTCCCGACGTGTATgctttgaagaagaagaagaagaagaagaagaagactcGCATCAGGGACTTCTGCAAACTTttgacagctttttttttttggcctggAGAAAGTGAAGTTTGCAGCATTTTTGGTTCCTGCGTTGAAAGACTTCTGTTTTAAAACCCGCAGGCTTGTGTCTCCAGCCTCCGCAGCTGCCTGTGTCGCGTCTCCCCTGCAGTCTCCAGATTCCCCACGTCCCGCGCATCCTCCGTCTTTCGCATGAATCTACTCGACCCCTTCCTGAAAATGACAGACGAGCCAGAGAAGTGTCTCTCCGACGCCCCCAGCCCGAGCATGTCCGAGGACTCCGCCGGGTCTCCGTGCCCGTCCGGCTCCGGCTCCGACACCGAGAACACCAGACCCTCCGAGAACCACCTGCTGGGGCCGGACGGGCAGCTGGGCGACTTCAAGAAGGACACCGAGGACGACAAGTTCCCCGTTTGCATCCGGGAGGCCGTGTCCCAGGTGCTGAAGGGCTACGACTGGACCCTGGTGCCCATGCCCGTCCGGGTGAACGGATCCAGCAAGAACAAGCCCCACGTTAAGAGACCCATGAACGCCTTCATGGTGTGGGCGCAGGCTGCCAGGAGGAAGCTGGCGGACCAGTACCCACACCTGCACAACGCCGAGCTCAGCAAGACCCTGGGCAAGCTGTGGAGATTACTGAACGAGGGTGAGAAGCGCCCTTTCGTGGAGGAGGCGGAGAGACTGCGGGTCCAGCATAAGAAAGATCACCCAGATTACAAGTACCAGCCCCGGCGCAGAAAGTCTGTGAAGAACGGGCAGAGCGAGCCCGAGGACGGCGCGGAGCAGACGCACATCTCGCCCAACGCGATCTTCAAGGCGCTGCAGCAGGCCGACTCGCCCGCCTCCAGCATGAGCGAGGTGCACTCCCCCGGGGAGCACTCGGGTCAGTCCCAAGGGCCCCCCACTCCTCCCACTACTCCCAAAACAGACATGCAGCCTGGCAAAGCTGACATGAAGCGGGAAGGACGCCCCCTTCAGGAGGGAAGCGGCAGGCAGCCGCACATTGACTTTAGAGATGTGGACATCGGGGAGCTGAGCAGCGACGTCATTTCCAACATCGAGACCTTCGACGTCAATGAGTTCGACCAGTACTTGCCACCTAACGGTCACCCCGGCGCGCCCGTCACCAACCCTGCCCACGGCCCCGGCGGCCAGGTGACTTACACAGGCAGCTATGGCATCAGCAGCCCTGCAGTCACCCAGGCAGCGGGCGCGGGCGGGCACAGTTGGATGcccaaacagcagcagcagcagcagcagcagcagcagcagcagcagcaacagcagcagcagcaacactcCCTAACCAGCCTGAGCAGCGAGCAGGGGCCAGGCCAGCAGAGAACGACACACATCAAGACCGAGCAGCTCAGCCCCAGCCACTACAGCGAGCAGCAGAGCTCTCCCCAGCACATCAGCTACGGCTCCTTCAACCTCCAGCACTACAGTTCCTCCTACCCCAGCATCACGAGGGCCCAGTATGACTATGCAGACCATCAGGGGGCCAACTCCTACTACAGCCACGCAGCCAGCCAGGGCTCCAGTCTGTACTCCTCTTTCGCCTACATGAGTCCAAGCCAGCGACCCATGTACACCCCCATCGCTGACACAACAGGGGTACCCTCCATCCCTCAGACGCACAGTCCTCAGCACTGGGAACAGCAGCCTGTCTACACACAGCTAACACGGCCTTAAGAGACATTCCCACAAAAAGcattgactttttaatttttttaaggcaCCTTTCTCAGAAACTGCTCCGTGCAGCCATCGTGCCACCATTCCCTGTCTTAAGAGTGAACACATACATCTGTTctgaaaataattcataatagtACAAAAGAGCTGGACTTGGAAAAAAATGAGACGTCAGATTTGGAATGGTTCACTCCGTGCCTTTTTACACTTGGAGTTGTGGTTATCATTTTTTTTAgccataattaaacaaaaaagaacttTGAAAATAATCCTCTGTGAGGAcatattcattataaatatttttagtatgtactgtgtatgtttcattacttttttgcagtttgttattttgggggatttatacatatttgtagaaaaaagaaaagctcttattttttcaaaatcagCTATAAACCACTCTCGGTAGTGCAGTCCTTTATGGCCTTATTTTGCTCTGACAAACatttttgtacagaaaataagtatatcttttccttttcattaacTATGCCTCGCAATaattttttgtgcttttgtatctttatttttgtttgtagcTCCTTTTTAAAGACCAGACTACAGAAATGAATAGAAGGGCTGATGTGAACGATGCCCTTTGATAAGGTGATAGTCATAAATTAATTGGATTACcttattattttgtagctttCTGAAATCCACCAGTGAGATGGAAGGCTATCACAATTGATAGGTAGATGTTGCATCCATGGGCCTTACTACATGACTTAGAAATGGATGTCGTcagttgtgctttttgttttgcttttgttatttttaagataCTGCCTTTGTGCCATCAGTGCCTATGGAGCTAGACTACATTTCTGAGTTGACCTACAAATGAAACGCCACACCAGCACACAACATAGAAGCCACAGCTGAGATACTGCTTTCTGTTTGACAGCATGTGCCTAACAGGCACAGGAAATGACCTTTAACACAAGAATCTTCCGCAGGTCATAACCAACTTAGTTTAGATTTTCAGTCCCAGCCCCCCTCAAATCCCACCCCCACTTCCTTGCCATTCttaaccattttaatttatttattagcattaattttattttaaagtaattatttgcattttattctttaatacAGCTGTatacaactaattaaaatttaaagaTCTAccctctgtatatataatagatatatatatatatatacaaacaggttTTCAGCAGAAGGGTATGCTTGTTTAAATATGGTACAAATAGTAACCctcttgtttatttatcatgtgtaaatgtttctgttgaaaagatttttttgttaaatcttGTATCTAGTTGTGTACAGATGAGTTTTAATTGTGATAaaacttgatttaattttttttaaagaaacaaaaaactggaagtttttttttcattcttacaaacatgaaaagaaaagtttATTTGAAGCTGTGGCTGCATTGTAaagatttgtttctttataaaattaccagcatatgttttttctttcaaaaagaGGTGTATTTCCTATTCTGTATTTCATATGTAAGTACTGACTTTTACAACTTTTAATGCAACTGAACaaaactttgttttctttagacGAGTTTAACAAGTTATTGTCTTTAAAGAAGCTTAtcttttgtattatattgtttgcaataaaagagaaaatgtattaa

Function

symbol description
sox9 Enables several functions, including DNA-binding transcription activator activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and protein kinase A catalytic subunit binding activity. Involved in several processes, including animal organ development; positive regulation of cell population proliferation; and regulation of transcription by RNA polymerase II. Located in nucleoplasm. Part of protein-containing complex. Implicated in 46,XX sex reversal 2; 46,XY sex reversal 10; and campomelic dysplasia.

NR:

description
PREDICTED: transcription factor Sox-9-A-like

GO: NA

KEGG:

id description
K18435 SOX9; transcription factor SOX9 (SOX group E)

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013199 True 3536 mRNA 0.47 3 24404338 24408807

Neighbor

gene id symbol gene type direction distance location
AMCG00013194 NA coding downstream 380918 24022377 ~ 24023420 (-)
AMCG00013193 sstr5,LOC104918336,LOC102219310,LOC103393002,LOC102291375 coding downstream 400497 24002726 ~ 24003841 (-)
AMCG00013192 NA coding downstream 409082 23985127 ~ 23995256 (-)
AMCG00013189 LOC108438014,LOC105012792,LOC105899987,LOC107719992,LOC107654495 coding downstream 455650 23941711 ~ 23948688 (-)
AMCG00013191 LOC107721501,LOC107688114,LOC107590387,LOC107601276,LOC107654495 coding downstream 476760 23917200 ~ 23927578 (-)
AMCG00013201 NA coding upstream 312752 24721559 ~ 24778233 (-)
AMCG00013205 LOC105012035,LOC107756032,LOC102797349,LOC107745977,LOC101487969,LOC102294156,LOC107704417,LOC106591843,LOC104930253 coding upstream 392205 24801012 ~ 24830971 (-)
AMCG00013206 LOC105013038,LOC108437168,LOC103356210 coding upstream 436823 24845630 ~ 24862556 (-)
AMCG00013208 NA coding upstream 454368 24863175 ~ 24869166 (-)
AMCG00013207 NA coding upstream 460490 24869297 ~ 24876994 (-)
G42800 NA non-coding downstream 181600 24220651 ~ 24222738 (-)
G42760 NA non-coding downstream 487314 23912791 ~ 23917024 (-)
G42743 NA non-coding downstream 502418 23901443 ~ 23901920 (-)
G42704 NA non-coding downstream 624988 23778925 ~ 23779350 (-)
G42557 NA non-coding downstream 1587969 22816156 ~ 22816369 (-)
G42993 NA non-coding upstream 636571 25045378 ~ 25376323 (-)
G43011 NA non-coding upstream 727969 25136776 ~ 25139743 (-)
G43040 NA non-coding upstream 880663 25289470 ~ 25351738 (-)
G43042 NA non-coding upstream 957459 25366266 ~ 25424074 (-)
G43044 NA non-coding upstream 958791 25367598 ~ 25369063 (-)
G42749 NA other downstream 556861 23844083 ~ 23847477 (-)
AMCG00013184 prkar1a,LOC107708993,LOC106606198 other downstream 565192 23826609 ~ 23839146 (-)
AMCG00013133 wu:fd14a01,LOC101068441,LOC101079795,LOC103368359,LOC107721187 other downstream 2877506 21503849 ~ 21526832 (-)
AMCG00013131 LOC101068441,LOC106598369,LOC106594844,LOC106593081,LOC106593408,LOC104955241 other downstream 2954384 21448329 ~ 21449954 (-)
AMCG00013137 myhm86-1,LOC107373462,LOC107574740,LOC103143810,LOC108243721,LOC106527115,LOC101079795,LOC108261476,LOC101068441,LOC101071797,LOC101163414 other downstream 2982220 21411939 ~ 21422118 (-)
AMCG00013204 mafg,LOC108241257,LOC106533856 other upstream 470834 24879641 ~ 24902428 (-)
AMCG00013216 NA other upstream 616931 25025738 ~ 25029004 (-)
G43001 NA other upstream 666586 25075393 ~ 25078244 (-)
AMCG00013223 tk1,kith,LOC102792372 other upstream 753350 25162157 ~ 25166773 (-)
G43070 NA other upstream 1107273 25516080 ~ 25516963 (-)

Expression


Co-expression Network