AMCG00013200


Basic Information

Item Value
gene id AMCG00013200
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 24774798 ~ 24777606 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013200
ATGGCTTCCATGATTTCTCCCATTGCACTGATCCTGCCAGAAGATGAACTGAAATGCCCAATCTGCCAGGACCTGGTGCGAAAACCAGTGACAATACCTTGTGGGCACAACTTCTGCAAGACGTGCATTAAGACCTACTGGATGAAAAGGATAGCCCCATACCCCTGCCCACACTGCAGGAAACAATTTTTTAGCTTCCCTCTCCTTTCATCAAACACCATGCTCTGCTCCATGATCGACCACGTGATGAAGAGCAAAGGAGACACCTCATCCTCTATGGTGGCTGAGGAGGATGATGTACCATGTGACATCTGCACAGGCAAGAAGCTAAAAGCCACCCAGTCCTGCATGAACTGCCTGGCCTCCTTTTGTGACGTTCACCTGCAGCCTCACCTTCAGAGCACAGCTCTGAAGCAGCACTGGCTCCGCAGCCCTGTGTGCAACATGCAGGAGATGCTCTGTAGGACGCACGGGAAGCTGCTGGAATTTTTCTGCAAGAAACACTGGACTCCCATCTGCAGCCTGTGTTTGGTGAAGCACCGAAAGTGTCCCACCCCGACTGTGAAGGAGATTCGTGAGGCCAAGGAGGttgaatataaaaagaaatTGAAAGCAATTGAAGAAGGCAAAGAAAACATCCAAGAAGCTATTTGCGTGCTGGAAGACACAGAAGAGGAAACAAGGGTGGCTGCTGATAAGATTAAGATGGATTTAAGCAAGCATTTTGAGGCTCTGAAAGACACTATCAATAATGCACTGCAGAAAGCCACCAGGCTTATAGAGATGGAGGAAGTGGCAGCTTTAAACCAAGTCTCCAagatccaggagcagctcaggAGTGACATACAGGCCTTAGATGATGTTGAAGAAGAGATTGAAGTACAGCTCTATGAGGATGACCCTTTCAAATTCCTTCAAAATCAGGTGCTGGTGCCCCCATTATACGAGACTGGGCAGATACCCAAGCATGACATCAAGCTGAATGGCCGGGCCTTTGAGAAGATCGCTGCTGATCTGACAGCCCTTCACACCAGCCTGACGGCACAGTTGCAGACAGTCTTACAGCAGAAGGAGGAACAGGAAACCGGCAAGTTTGAAATCAGAGAAAAAGATGCTTATAAATTGAcaggaaataatgttaatagttttttccattttaaacccTATTTTCCAGATGCCTGTGGGGTGACCTTCGACCCCAGCACAGCCAGCGCTTCAGTTCTTCTCTCGGAGGACAGCCGTATGGCAACAGTTGAGCACAGTGGATTGCTGACCTGGAAGGATTACGTGATTGATATGGAGATGGGCTTCAGGGTTTTGTGCTCCCAGAGCTTCAGCAGGGGCCAGCACTACTGGGAAGTGACCCCTCCCACAGGGAACAGTAACTGGGCAGTTGGCGTGACATACAAGAGCAACACAGACTGCTACAGAACTCTGGGCAAGGACAACAAGTCTTGGTGCGTCAAATGGCACAGGCTGAGGAAGGAGGAAGATGAAGAGGCAATTGCTGTATTACAGAGTCCCAGTCAGGGGCTTTTCACCTCTCACGATGGGGAGATGTATCATGTGTCACAGCAGTGTCCCGAGAAGGTGGGAGTGTTCTTGGACTGTGACCTGGGGATTGTGTCTTTCTTCTCCATCTCGGACAGCAGGGCGACTCTGTGGTACAAGTACGAGGCTGTGTTCTCTGAGCCCGTGTACCCCGCCGTGTGGCTAAGAGAGCCCGAGAATAAGATGACAATCGGCTGA

Function

GO: NA

KEGG:

id description
K10652 TRIM25, EFP; tripartite motif-containing protein 25

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013200 True 1749 mRNA 0.50 5 24774798 24777606

Neighbor

gene id symbol gene type direction distance location
AMCG00013196 slc39a11,LOC107693650 coding upstream 554079 24216510 ~ 24220719 (+)
AMCG00013197 NA coding upstream 582316 24124906 ~ 24192482 (+)
AMCG00013195 NA coding upstream 658540 24022831 ~ 24116258 (+)
AMCG00013187 NA coding upstream 790373 23973082 ~ 23984425 (+)
AMCG00013188 NA coding upstream 812841 23952046 ~ 23961957 (+)
AMCG00013203 NA coding downstream 11019 24788625 ~ 24793416 (+)
AMCG00013202 NA coding downstream 20721 24798327 ~ 24799733 (+)
AMCG00013209 NA coding downstream 177365 24954971 ~ 24957583 (+)
AMCG00013215 NA coding downstream 196111 24973717 ~ 24991262 (+)
AMCG00013214 NA coding downstream 267776 25045382 ~ 25053636 (+)
G42857 NA non-coding upstream 6558 24768015 ~ 24768240 (+)
G42856 NA non-coding upstream 7017 24767518 ~ 24767781 (+)
G42855 NA non-coding upstream 7340 24767256 ~ 24767458 (+)
G42850 NA non-coding upstream 22716 24751807 ~ 24752082 (+)
G42849 NA non-coding upstream 23331 24750807 ~ 24751467 (+)
G42906 NA non-coding downstream 102158 24879764 ~ 24882058 (+)
G42922 NA non-coding downstream 147185 24924791 ~ 24926745 (+)
G42925 NA non-coding downstream 213849 24991455 ~ 25016366 (+)
G42950 NA non-coding downstream 311564 25089170 ~ 25376099 (+)
G43062 NA non-coding downstream 730585 25508191 ~ 25511347 (+)
G42858 NA other upstream 4650 24768424 ~ 24770148 (+)
G42846 NA other upstream 25403 24747492 ~ 24749395 (+)
AMCG00013198 NA other upstream 442944 24241269 ~ 24331854 (+)
AMCG00013147 NA other upstream 2513982 22248497 ~ 22260816 (+)
G42453 NA other upstream 2529008 22242429 ~ 22245790 (+)
AMCG00013236 NA other downstream 735747 25513353 ~ 25521681 (+)
AMCG00013248 NA other downstream 1015799 25793405 ~ 25798013 (+)
AMCG00013251 NA other downstream 1375630 26153236 ~ 26161139 (+)
AMCG00013255 NA other downstream 1477368 26254974 ~ 26258982 (+)
AMCG00013257 LOC106612075,LOC107560953 other downstream 1590189 26367795 ~ 26396705 (+)

Expression


Co-expression Network