AMCG00013206 (LOC105013038,LOC108437168,LOC103356210)


Basic Information

Item Value
gene id AMCG00013206
gene name LOC105013038,LOC108437168,LOC103356210
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 24845630 ~ 24862556 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013206
ACTTCCCTGGTAGGAGGCGTTGTCCGGCGCTGCCTGGTAAACGTCAGTGCTCTGCAGAAGCCGGCAAGTCTGATCCGGGCACGCACATCTGTCATTTCCCTTTAAGATACTTCGGATCCAGGCCGTTCACGAATTGTATACATACACGCgtaaatagatatatatttaagttttaattaaagaaaaactacCTCTTACGCAATTGTTTGTACTACATTCGTCGTAAAAACCAATCTAATATTTGAACATGTTCAAGAACGGTCACCACGCAGCAGCCGACGAAGGGAAGGAGCCGGGGGGCAAAGCGGGCACCGCAGCCTGCAGCCCGGAGAAGAGAAAGCGCGTCGTGCGGGTGTGGTGTGACGGGTGctATGACATGGTACACTACGGGCACTCTAACCAGCTTCGCCAGGCCAGAGCTATGGGAGATTACCTCATTGTTGGCGTGCACACGGATGagGAGATAGCGAAACATAAGGGCCCCCCTGTGTTCACACAGGCCGAAAGGTACAAGATGGTGCGTGCCATTAAGTGGGTGGACGAGATTGTGGAGGGGGCGCCCTATGTCACCACCCTGGAAACTCTCGACAAGTACAACTGCGACTTCTGTGTTCATGGAGATGATATCACCCTCACTGTGGATGGGAAGGACACCTATGAAGAGGTTAAAACGTCAGGAAGATACAGGGAGTGTAAGCGAACTCAGGGAGTCTCTACTACCGACTTGGTTGGCCGAATGCTCCTGATGACTAAAGCGCATCACAGCAACCTAGACAATTCAGATTACCAGCAGCATACGGACAACTTTGGAAAGATGCTTGTGTTTGGACTGCCGCAGGGTCCTAAAGGCCGCAGTCCCTGGACAGGGGTGTCCCAGTTCTTGCAGACGTCACAGAAGATCATCCAGTTCGCCTCAGGCAAAGAGCCACAGCCTGGAGACACCATCATCTATGTGGCTGGAGCCTTTGACCTCTTCCATATTGGGCACGTGGACTTCTTGGAGAGTGTTTATAAGCAGTCAGATAAGCCATATGTCATCGTTGGGCTCCATTTTGACCAGGAAGTGAACCGCTACAAGGGCAAGAACTACCCGATCATGAATGTCCACGAGCGAACCCTCAGTGTGCTGGCCTGCCGGGTTGACCTGGTGTGTCATGGGAAAACTGAAGTGTTTCCAGATAAGGATGGATCAGACCCATACGCTcAACCCAAGAAACGTGGTATTTTCCTTACTGTGGACAGTGGAAATGACCTCACTACAGATGACATCGTGCAGAGAATTATCAAGAACAGgctgttgttcgAGGCCCGAAACCAGAAGAAAGAAGCCAAGGAGATGGCGGTGATACAGGCCATGAAGAAACGTGAGGAGGAGAAGACACAGGAGTTGGGCAAGGCCGTGCTGCAGCAGGGATTGGAGAATTGAACAGCCCAAATGCCTGCGGGCGGGCGAGGGGACGAACAAAACCACATCCAGTTGCCTGTGCTGGAGGTCCTGTCTCCCTCACCCGGGTCTCTCCATTTAACTTCAGCAGTCGAAAGACTTATAGGTGTCTCTTCTGTTTAATATGGTCGtgtatttcttttttgggggtATGACATTCTTCCTTTGACTTTGAGCAATGTTTCCTTACCTGGGATGCAAGTCACTCCAATAACTTTTGGTTAAATTAGCGAGAAAGTAGAAAGGGCTTTGTTTAACGTATTGAAGTGGATCTGAAAGCCTTGTCCAGCTTAGTTCACTACCATCTCTGATTTCCAGAGAGCACAACCTCAGTATGACAGATTGTACCATACTAACAAATATGCCTGTTGAAGGaccattttgaatttgtttttttaacaacaacatCCTCATGTACATTAATGAGATTATTAACTATTGCTCTCAGTTTGAGATGAATGAAAGAGATCTGTGAGCTGAAATGATGCACTAAAACAAGGCACCATCGTCCCAACTTCgattaattgaattacatttaatatccaGATACAGCTGACAGTTCAGCAATCAGTCCCTGCTCTATGATCTGTGTAGAGTATGATTTTAGACAAGCGATGGCCTAGAGACCACTTATGAACCCACACTTTTTAATGCAGGACCAGTTATCACTAATGAGGCAAAAAGTGGCCACTTTGAAGCTATGTCACTCCTTGTGAATGATTGTATGTTTATAACAGTTATGATTTATGATGTTTTAAACATAGTACTTCTATTAAGTATATGTTTTCATTCTGACAGTTGGAAATAGGATTCTCCTGTGGGCGGCACCATTTACAATAAGAACTTCCTCTCTGACAGAAATCTTACTTGAAGCCCATGGACTTTTGACTCTGTTTTCCTGTCAGAACAAGTGgctgtgttttatgtttgaCCTATCCCAGGTTTGTACAATAGTATTTGTAAAAACCGGAgaaattgatttgaattttaATGTTGCTCTAATCTTTTCTTCTTGGCTCTATTTAAGAAAAGTGTGAAATGTAAGTATGGGCAGAAAAAGGTCTGATTGGAAAACACtgacaattattttatgttgttcaAGGGGATGAAGGGGTCATAATCAGGGAGACAAAACCACTTTGTACAAAAAAACTCCCACAACCTTTGTAGCCATTTTTCGCAGATCAACTGGGtgttttacaaatatgtcaTAATACTGTTGTATAGCAGCTCAAAGAATTTATCCATTGCTAGCAAGAGACTAAATTCTGCagcttttattttgcttgtacagttgttgttgtttttttgtggggg

Function

NR:

description
PREDICTED: ethanolamine-phosphate cytidylyltransferase isoform X1

GO:

id name namespace
GO:0009058 biosynthetic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K00967 PCYT2; ethanolamine-phosphate cytidylyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013206 True 2761 mRNA 0.45 12 24845630 24862556

Neighbor

gene id symbol gene type direction distance location
AMCG00013205 LOC105012035,LOC107756032,LOC102797349,LOC107745977,LOC101487969,LOC102294156,LOC107704417,LOC106591843,LOC104930253 coding downstream 14659 24801012 ~ 24830971 (-)
AMCG00013201 NA coding downstream 67397 24721559 ~ 24778233 (-)
AMCG00013199 sox9,LOC106589342,LOC106579008,LOC106606426,LOC100135781 coding downstream 436823 24404338 ~ 24408807 (-)
AMCG00013194 NA coding downstream 822210 24022377 ~ 24023420 (-)
AMCG00013193 sstr5,LOC104918336,LOC102219310,LOC103393002,LOC102291375 coding downstream 841789 24002726 ~ 24003841 (-)
AMCG00013208 NA coding upstream 619 24863175 ~ 24869166 (-)
AMCG00013207 NA coding upstream 6741 24869297 ~ 24876994 (-)
AMCG00013210 pycr1,LOC108236293,LOC103150509,LOC107572052,LOC103465458 coding upstream 44565 24907121 ~ 24912555 (-)
AMCG00013212 NA coding upstream 57745 24920301 ~ 24921206 (-)
AMCG00013211 notum1a,notum,LOC107732149 coding upstream 64581 24927137 ~ 24943446 (-)
G42800 NA non-coding downstream 622892 24220651 ~ 24222738 (-)
G42760 NA non-coding downstream 928606 23912791 ~ 23917024 (-)
G42743 NA non-coding downstream 943710 23901443 ~ 23901920 (-)
G42704 NA non-coding downstream 1066280 23778925 ~ 23779350 (-)
G42557 NA non-coding downstream 2029261 22816156 ~ 22816369 (-)
G42993 NA non-coding upstream 182822 25045378 ~ 25376323 (-)
G43011 NA non-coding upstream 274220 25136776 ~ 25139743 (-)
G43040 NA non-coding upstream 426914 25289470 ~ 25351738 (-)
G43042 NA non-coding upstream 503710 25366266 ~ 25424074 (-)
G43044 NA non-coding upstream 505042 25367598 ~ 25369063 (-)
G42749 NA other downstream 998153 23844083 ~ 23847477 (-)
AMCG00013184 prkar1a,LOC107708993,LOC106606198 other downstream 1006484 23826609 ~ 23839146 (-)
AMCG00013133 wu:fd14a01,LOC101068441,LOC101079795,LOC103368359,LOC107721187 other downstream 3318798 21503849 ~ 21526832 (-)
AMCG00013131 LOC101068441,LOC106598369,LOC106594844,LOC106593081,LOC106593408,LOC104955241 other downstream 3395676 21448329 ~ 21449954 (-)
AMCG00013137 myhm86-1,LOC107373462,LOC107574740,LOC103143810,LOC108243721,LOC106527115,LOC101079795,LOC108261476,LOC101068441,LOC101071797,LOC101163414 other downstream 3423512 21411939 ~ 21422118 (-)
AMCG00013204 mafg,LOC108241257,LOC106533856 other upstream 17085 24879641 ~ 24902428 (-)
AMCG00013216 NA other upstream 163182 25025738 ~ 25029004 (-)
G43001 NA other upstream 212837 25075393 ~ 25078244 (-)
AMCG00013223 tk1,kith,LOC102792372 other upstream 299601 25162157 ~ 25166773 (-)
G43070 NA other upstream 653524 25516080 ~ 25516963 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000112_03978196_03991078 PCYT2, PCY2 coding CI01000112 null 3978196 ~ 3991078 (+)