AMCG00013216


Basic Information

Item Value
gene id AMCG00013216
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 25025738 ~ 25029004 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013216
CGCGttcaaaaaagtaaatgtttacgTTTGTATATTTAGaagaacatatattttatacacctgtaAAATAGCACGATTATAAAACAGCTCATACATTAATCAGTATTAAAGTACCGAATGGAATAGGTTTTATAACTTGAATGAAACCTTTGAAATGGGGCAATAGCCTAATGTACGTGTATTGAATgcctttataaaaatataaaacgaCCGTTTAAATGAATACTTTTCAGGAAACTGTCAGCAAGCTGCTTTCAATGTCCTTCAAAGATGAGAAGACCAGAGTGGGCGCTGATGCTGTTATCCTGATGGCCGAGATGCTGAAGGTCTTCGTTCAAGCTTTTAGACTTCTAGTGTTTACACTGCTGGGCCACCGGAGGGCGCTGGTGTTCTGCTcctggagggagagggatgtcCTGCAATGACAGCCTCAGTCACATTTCCACGGACAAACCTATTAGTTGCTCCATTAAAAGCAATTCATCACAAACATGAATATAGCAGTGTATTAATCCAACAGTCCGTAAAGgatagaaataaatgtttatgaatTTCACATTGAAGTTGTAAAAACCTTAGGAAACAAAAACCAAAGCAGTTTTCTCCTGTAAATAGTCTAACTAAGATAgtcatgtatatatacatttgtcagtgtattgtttgattaaatatgattctgcattttctttgatAAAGTGAggcctttttttgttgttttaacgTATTTCAACACGCCAGCCTCCTCGGGCTCTGTTTGTAGTAAAAGTGCAGTGGACAGCAGGTGGTCCTGTTAGCAGGCGCTTGAACTGTAGAGCGACTCGCGCCTGTGAATTTGCTGTTTCAGTGGCGGGAAACGCAGTTGGAGACGGAGCACcacatgtattaaatacacattttacgAATCTCAAAAGGaccattgtgtttatttgaagaACTCTCACGAGAACCCTGAATATCACCTGGGATAACGTGcctttgtgtaatttgttcCGGTCCTCCAGGGCTGGGTAGGGTTACTATAGTAGTGGGGGTGCCAGAAGATGC
>TU53519
CGGAAACGAGTTCATTCTGTTGAAAATGGAGGACAGAGGAGAGGGCGCCGCGttcaaaaaaGAAACTGTCAGCAAGCTGCTTTCAATGTCCTTCAAAGATGAGAAGACCAGAGTGGGCGCTGATGCTGTTATCCTGATGGCCGAGATGCTGAAGGTCTTCGTTCAAGAGGCTGCAGTGCGATCGGTGAAACAGGCAGAAACTGAAGGCTGTGACAACATTGACGTCGAACACTTTGAAAAGGTGCTGCCACAGCTGCTTTTAGACTTCTAGTGTTTACACTGCTGGGCCACCGGAGGGCGCTGGTGTTCTGCTcctggagggagagggatgtcCTGCAATGACAGCCTCAGTCACATTTCCACGGACAAACCTATTAGTTGCTCCATTAAAAGCAATTCATCACAAACATGAATATAGCAGTGTATTAATCCAACAGTCCGTAAAGgatagaaataaatgtttatgaatTTCACATTGAAGTTGTAAAAACCTTAGGAAACAAAAACCAAAGCAGTTTTCTCCTGTAAATAGTCTAACTAAGATAgtcatgtatatatacatttgtcagtgtattgtttgattaaatatgattctgcattttctttgatAAAGTGAggcctttttttgttgttttaacgTATTTCAACACGCCAGCCTCCTCGGGCTCTGTTTGTAGTAAAAGTGCAGTGGACAGCAGGTGGTCCTGTTAGCAGGCGCTTGAACTGTAGAGCGACTCGCGCCTGTGAATTTGCTGTTTCAGTGGCGGGAAACGCAGTTGGAGACGGAGCACcacatgtattaaatacacattttacgAATCTC

Function

GO:

id name namespace
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0044237 cellular metabolic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0032991 protein-containing complex cellular_component

KEGG:

id description
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03040 Spliceosome
ko03013 Nucleocytoplasmic transport
ko03008 Ribosome biogenesis in eukaryotes
ko03018 RNA degradation

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013216 True 1044 mRNA 0.40 3 25025738 25028956
TU53519 False 823 TUCP 0.44 5 25025876 25029004

Neighbor

gene id symbol gene type direction distance location
AMCG00013211 notum1a,notum,LOC107732149 coding downstream 82292 24927137 ~ 24943446 (-)
AMCG00013212 NA coding downstream 104532 24920301 ~ 24921206 (-)
AMCG00013210 pycr1,LOC108236293,LOC103150509,LOC107572052,LOC103465458 coding downstream 113183 24907121 ~ 24912555 (-)
AMCG00013207 NA coding downstream 148744 24869297 ~ 24876994 (-)
AMCG00013208 NA coding downstream 156572 24863175 ~ 24869166 (-)
AMCG00013217 NA coding upstream 1587 25030591 ~ 25031773 (-)
AMCG00013224 NA coding upstream 70347 25099351 ~ 25111435 (-)
AMCG00013235 NA coding upstream 328676 25357680 ~ 25358501 (-)
AMCG00013233 NA coding upstream 356735 25385739 ~ 25418578 (-)
AMCG00013240 NA coding upstream 464373 25493377 ~ 25504516 (-)
G42800 NA non-coding downstream 803000 24220651 ~ 24222738 (-)
G42760 NA non-coding downstream 1108714 23912791 ~ 23917024 (-)
G42743 NA non-coding downstream 1123818 23901443 ~ 23901920 (-)
G42704 NA non-coding downstream 1246388 23778925 ~ 23779350 (-)
G42557 NA non-coding downstream 2209369 22816156 ~ 22816369 (-)
G42993 NA non-coding upstream 16374 25045378 ~ 25376323 (-)
G43011 NA non-coding upstream 107772 25136776 ~ 25139743 (-)
G43040 NA non-coding upstream 260466 25289470 ~ 25351738 (-)
G43042 NA non-coding upstream 337262 25366266 ~ 25424074 (-)
G43044 NA non-coding upstream 338594 25367598 ~ 25369063 (-)
AMCG00013204 mafg,LOC108241257,LOC106533856 other downstream 123310 24879641 ~ 24902428 (-)
G42749 NA other downstream 1178261 23844083 ~ 23847477 (-)
AMCG00013184 prkar1a,LOC107708993,LOC106606198 other downstream 1186592 23826609 ~ 23839146 (-)
AMCG00013133 wu:fd14a01,LOC101068441,LOC101079795,LOC103368359,LOC107721187 other downstream 3498906 21503849 ~ 21526832 (-)
AMCG00013131 LOC101068441,LOC106598369,LOC106594844,LOC106593081,LOC106593408,LOC104955241 other downstream 3575784 21448329 ~ 21449954 (-)
G43001 NA other upstream 46389 25075393 ~ 25078244 (-)
AMCG00013223 tk1,kith,LOC102792372 other upstream 133153 25162157 ~ 25166773 (-)
G43070 NA other upstream 487076 25516080 ~ 25516963 (-)
AMCG00013241 NA other upstream 559483 25588487 ~ 25628252 (-)
AMCG00013245 NA other upstream 747370 25776374 ~ 25777723 (-)

Expression


Co-expression Network