AMCG00013223 (tk1,kith,LOC102792372)


Basic Information

Item Value
gene id AMCG00013223
gene name tk1,kith,LOC102792372
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 25162157 ~ 25166773 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013223
GCGGGACGTTCGACTTTGTCACTGAACGGGGGTTCCCTCTGATTAGGCGTCTCTGCaggtttaacttattttttgaatgttatattgtaatttataattattattgtaattattttgtgtactaGCACTTGAACAAAGATGGACTGCTTGAACGTGCCAGAAATTATGCCCAATTCTCCCAGGAAAACGAGGGGACAAATTCAGGTTATTTTCGGGCCGATGTTCTCCGGAAAAAgCACCGAGTTGATGCGCAGGGTGCGGCGCTTCCAGATCGCACAGTACAATTGTCTGGTCATTAAATATGCCAAAGACACCCGATACTCCGACAGCGGGATGGCAACCCACGATAGGAGCACGATGGAGGCAGTGCCAGCCAATCAGCTAAAGGATGTATACACACTGGCTATGGAGAGCTCTGTCATCGGCATTGACGAGGGCCAGTTTTTCCCTGACACAGTAGAGTTTTGTGAGGAAATGGCCAACAGGGGCAAGACCATCATCGTAGCAGCACTGGACGGGACATTCCAGAGAAAGCCATTTGGGAATATCTTGAACCTGGTGCCGCTGGCTGAGAGCGTGGTGAAGCTGCATGCAGTGTGCATGGAGTGCTACAGGGAGGCTGCCTACACGAAGAGGCTGGGGGCAGAGAAAGAGGTGGAGGTGATCGGAGGGGCAGATAAATACCACGCTGTGTGCAGAGCCTGCTATGGCGTGTTGCAGATGCAGGGGAAGGAGAATGGTGTGCCCCAGCTGAGGAGGGAGGAGACCCCTCCCCACACTCTGCCTGGGAAACCGCTGGACCCCAGAGTGCCCCGGAAGCTGCTCGGGACACTCCAGCTCTAAGCGTTGGGTTGCCTACCGCTGGTTCAACTAGAGCGTGTTTCAAATggactaatttattttctagaGATAGATCTGCCACTAAAAGGGGCACTCTGTAAGAGGATTTACTGTTGTAATATATGGATATGAagggtttttaaaaaaaaacgcaaAGGGAGTGTGGGCTGGGGGGGGCGGTTAGTGTTGAAAGCATGTGATAAAGTATGTTAAcaggtttatattttcaaatgaaaatgaacagatTCCAAACCCCATTCTACATCTAATTTGAAGGTTTGTCTTGTATCCCCTTTAGAAAGCACACAAGTGGCAGGGATGCTTGTGTTTTACGACCAGAAAAGGGCTCTTCAGTCACAAATTGATAGTGTGCTGGTCATAGTATACAGTATGTGTCATGTAGAGTCTTATATTTAGACTTTTTTAAGTATCCCATAACAGATGAGTGATAGAAAACTTAGAACAATATATATGAAGTTTTATTAATCTATTGCCAAACCTTTGgaatgaataacaataattgGCTGTTAAACAGGAGAAACTTTGGAAAAAGACAACATATTGTAGCTAAAATATGTGACCACATTCCAGTCCTTGAAGAATGCACCTTAATCTTATTAAGGCATTTCTCTCCCTAAAAAGGTTAGAACTTGGAACGCTTATAAACTTGAAAAATTGTAGCCTGTTACACTGCAAGATCTACAGTACTGACAAACTTCAAAAGTAGACAGACGCTGTGACCTCTGGGTGAATTGGACTCAAAGAGCATGGGGGCATTACTGTGTGAAAGATGTATGCAAGATCTCTGAGTGAGACTCCACTACAATACCAGCTAACTACCATAAACTCACTGCCAAGGTCATCATTTCAGAGCTTTTCCTTGTGTGTaatgtctattttaaaatgcactgtgtgtctgtgttgaaaatgtaaatgattgtacatattttaaataaaatgccgTAGTAAACTGCCAAAGGTTTCTTGTGATCTTAGTTTCTGTTACAATAAAAAGCCTTTGTAAACTCGCTATGATTCATTTTAAGAACTTCCAGGTCCTGATACCAGATTGTAAACTTCTGCTATTTGTCAGTGGGAACAAAGTCAAGGGACTTTTTTCTCGATTTGGAGAATgttgt
>TU53641
TTGTCACTGAACGGGGGTTCCCTCTGATTAGGCGTCTCTGCaggtttaacttattttttgaatgttatattgtaatttataattattattgtaattattttgtgtactaGCACTTGAACAAAGATGGACTGCTTGAACGTGCCAGAAATTATGCCCAATTCTCCCAGGAAAACGAGGGGACAAATTCAGGTTATTTTCGGGCCGATGTTCTCCGGAAAAAgCACCGAGTTGATGCGCAGGGTGCGGCGCTTCCAGATCGCACAGTACAATTGTCTGGTCATTAAATATGCCAAAGACACCCGATACTCCGACAGCGGGATGGCAACCCACGATAGGAGCACGATGGAGGCAGTGCCAGCCAATCAGCTAAAGGATGTATACACACTGGCTATGGAGAGCTCTGTCATCGGCATTGACGAGGGCCAGTTTTTCCCTGACACAGTAGAGTTTTGTGAGGAAATGGCCAACAGGGGCAAGACCATCATCGTAGCAGCACTGGACGGGACATTCCAGAGAAAGCCATTTGGGAATATCTTGAACCTGGTGCCGCTGGCTGAGAGCGTGGTGAAGCTGCATGCAGTGTGCATGGAGTGCTACAGGGAGGCTGCCTACACGAAGAGGCTGGGGGCAGAGAAAGAGGTG

Function

symbol description
tk1 Predicted to enable thymidine kinase activity. Predicted to be involved in thymidine metabolic process. Predicted to act upstream of or within DNA biosynthetic process and phosphorylation. Is expressed in several structures, including alar plate midbrain region; nervous system; optic vesicle; pectoral fin musculature; and proliferative region. Orthologous to human TK1 (thymidine kinase 1).

NR:

description
PREDICTED: thymidine kinase, cytosolic

GO:

id name namespace
GO:0009157 deoxyribonucleoside monophosphate biosynthetic process biological_process
GO:0009165 nucleotide biosynthetic process biological_process
GO:0016310 phosphorylation biological_process
GO:0006260 DNA replication biological_process
GO:0004797 thymidine kinase activity molecular_function
GO:0005524 ATP binding molecular_function

KEGG:

id description
K00857 tdk, TK; thymidine kinase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013223 True 1979 mRNA 0.43 7 25162157 25166773
TU53641 False 642 TUCP 0.49 6 25163983 25166758

Neighbor

gene id symbol gene type direction distance location
AMCG00013224 NA coding downstream 50722 25099351 ~ 25111435 (-)
AMCG00013217 NA coding downstream 130384 25030591 ~ 25031773 (-)
AMCG00013211 notum1a,notum,LOC107732149 coding downstream 218711 24927137 ~ 24943446 (-)
AMCG00013212 NA coding downstream 240951 24920301 ~ 24921206 (-)
AMCG00013210 pycr1,LOC108236293,LOC103150509,LOC107572052,LOC103465458 coding downstream 249602 24907121 ~ 24912555 (-)
AMCG00013235 NA coding upstream 190907 25357680 ~ 25358501 (-)
AMCG00013233 NA coding upstream 218966 25385739 ~ 25418578 (-)
AMCG00013240 NA coding upstream 326604 25493377 ~ 25504516 (-)
AMCG00013238 NA coding upstream 341424 25508197 ~ 25512871 (-)
AMCG00013239 NA coding upstream 359869 25526642 ~ 25537475 (-)
G43011 NA non-coding downstream 22414 25136776 ~ 25139743 (-)
G42800 NA non-coding downstream 939419 24220651 ~ 24222738 (-)
G42760 NA non-coding downstream 1245133 23912791 ~ 23917024 (-)
G42743 NA non-coding downstream 1260237 23901443 ~ 23901920 (-)
G42704 NA non-coding downstream 1382807 23778925 ~ 23779350 (-)
G43040 NA non-coding upstream 122697 25289470 ~ 25351738 (-)
G43042 NA non-coding upstream 199493 25366266 ~ 25424074 (-)
G43044 NA non-coding upstream 200825 25367598 ~ 25369063 (-)
G43072 NA non-coding upstream 352038 25518811 ~ 25519993 (-)
G43100 NA non-coding upstream 421141 25587914 ~ 25588261 (-)
G43001 NA other downstream 83913 25075393 ~ 25078244 (-)
AMCG00013216 NA other downstream 133153 25025738 ~ 25029004 (-)
AMCG00013204 mafg,LOC108241257,LOC106533856 other downstream 259729 24879641 ~ 24902428 (-)
G42749 NA other downstream 1314680 23844083 ~ 23847477 (-)
AMCG00013184 prkar1a,LOC107708993,LOC106606198 other downstream 1323011 23826609 ~ 23839146 (-)
G43070 NA other upstream 349307 25516080 ~ 25516963 (-)
AMCG00013241 NA other upstream 421714 25588487 ~ 25628252 (-)
AMCG00013245 NA other upstream 609601 25776374 ~ 25777723 (-)
AMCG00013246 NA other upstream 619370 25786143 ~ 25791759 (-)
AMCG00013258 NA other upstream 1312838 26479611 ~ 26484414 (-)

Expression


Co-expression Network