AMCG00013232


Basic Information

Item Value
gene id AMCG00013232
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 25479858 ~ 25485620 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013232
ATGAACTTGTACAGAAGAGCCGGGGCGGCGCGGGCTCTGCTGCAGCGCCGGACACCCGCTGCTGCTGCCGTGGACAGTGTGTCGGCGCGGCACCCGGCCGCCTGCGGCGCAGCTCCGCTCAGACGCTGTTATAAGCAGCCCGCAGTGCCGGCGCGCTCGGCCGCAGGGCGCACGGTGGACCTCCGCAGCGACACCGTCACCCAGCCCGGGCCGGCCATGCGCCGAGCCATGGCGGAGGCAGAGGTGGGCGACGATGTGTTTGGCGAGGACCCGACGGTCAACAGATCCATGAGCAACCTTATAGCGGTGATGGTGCACTGCAGGGAGCGAGGTGCCGAGATCATTGTTGGAGATCAATCACACCTGCATATCTACGAGCAAGGTAGCAGCGCTCAGTGTGCTGGTGTCCACTCCACTACTGTGACCAACCTCCCCGATGGGACCTTTGACCTGGAGGAAGTAGAGGCCAAGATCAGACATGGCTACCCCGACGCACACTACCCCAGCTCTCGCCTCATCTGtgtggaaaacacacacaacatccaGGGGGGTCGCATCCtgcctctctccttcctccGGGAGTTGCGCTTAATGGCTGACCGGTACGGCCTGGCTGTTCACATGGATGGGGCCCGGCTGATGAATGCAGCAGTGGCATTGGGTGTGCAGCCTGCAGACATCCTTCAGTACTGCGACACTGTGAGCGTCTGTCTGTCTAAGGGACTGGGCGCTCCGGTCGGCACTCTCCTGGGTGGGCCAAGGGAGTTTGTACAGAGGGCAGTGCGCGCCCGCAAGGCCCTGGGCGGGGGGATGCGGCAGAGTGGTATTCTGGCAGCGGCTGGTATCATAGCACTGACAGACATGGTGTCCAGGCTGGAGGAGGATCACAGGAATGCCAAGACGTTTGCCCAAGCACTCCTACAGAGCGACCCTCCTCTCTACCAGGTGGAGATGAGCCACGTGGAGACCAACATCCTGCGGTTCCGGCTCTGTGATCCCCGGCTGACCCCGGAGGAGTTCTGCGAGAGGATGGCGGCGGTGGGCAGCAGGGAGGCGGGGGCGCTGGGGCAGGAGGTGCGGGTGCTAATGTTTCCTCATGTGGGGCGGTCGGTGAGGGCCGTGTGGCACCTGGGCATCAGCCGAGAAGACACCCAACTCGCCATCCAGAAACTGCACTATGTCACCAGGCAGTGTGTAGAGGACAGCCAGAGGGCCTGAACTGCAGAATGACCATTGTTTTTCATGGTCTGCCTGCCAGGAGTCCTCCTGATAGCTGTGGGATGTGCAGAATCAAAGACACAGAAATCTCAGCGATAGATAAAGAAGCGTTGCAGGACTAtcattatttttcccttttttccattattttgaaatgccaGGTGGTGTCAGAAGCACTTAAGGTTTGTGATGACATGTTATTTTCTGTAGGAAtgcgattaaaaaaaataataatttagtttgcaAGGAAAAATGtcataatgtaattttaattacagtattattaatattaatattacatttcctttcGAACAACTGAAGAAGGGATTGGTTTTCAAAGTGCCTAGAGCTACGCAGTTCATAGGCACAAGCAGCCTGGGATATGGAATATGAGTAATGAAGAGCAGGGCTGGACAGCTAGACCACAGTGTGCGAGGGCCCGGTGCTCTCTGCCTGGGCTCTGTGTACACAGTGTGCTCCGAGTGTGGTTCAGGTCACTGCCTGAGAAAACACTTTCACAATAACGCTCTCCATCAGCACATTATGACAGCTGGAGACCTGATCTTTTGGTTTAAGTTTCAGGAACCAGGCAATTACATTGCTTATTTTGTACAAGGTTACATAAAAAGTCATTGTGAGAGCGGGACTCGTTTTGTCCCTGCACACTCCATTTCACATGGGCAATGTTTGTGACCAGGCCTCTGTCAACTGTAGTGAGAACCATTTCGCTAAATGCATCTCTGTCAGCTTTTATCGAAATAAATCTTCAACAGCTTCGTACAAAGCTCGGTAATCTTCAGATGTTATCCGAGTTGCGGTGACCAGGTAGGAGAGGAGTTGTTGGAAGTAATCACAGAGACGACGGTGCCCCAGTAGCCTGCGGAGGTTCACACCCAGAGCAATGGCTGTTGTCTGTAGGTTGCAGGCACCCATTGTTTGCATTGAGTGTGTTCTCATCAGGATATTATTTTTCGGCTCCTGTAGAATTTCAGTCATTTGGttgaatttaaaacacaaaatatttttaatctgatttGATCAAACAATTAATCCGAACCCCACTTATTCAGGGTCATGGGCAATAAAGGAAGGCTTTCATAGCTAATCAAGATTTCATCTCAATGAGTAACTGGAGTAAAAGGTATGAATGCATGCTGTaaaaaagctgttaaaaaaaaaagttttttttaaaccttagTTTTCTTGTAAAAGTCATCAGCAATTGCTATTTGCGAACAtagtatttttcatatattctGAGCTGTCTGATTACAGTATGTGGGATGTGAATCTTTGAAAGCTACCTCAAACATTAATAAACCAGAGCTGTGAACTCAgcagttgttgttgtggtggttactgcagaatataaaatatgtttctttcGGTCACTGAATCTTTCATTTCCAGTGGCAGGTAATAAACAAGGAAGGAGAACCCCCAAAAGACATTTGTACCAACCATATTAGCACCGAGTCTttaaacatggaaataaaatgtcccTGCgactacatttaaatgtattctaatcTGATAGAATGTAAGTTGAATTTCTGTTGTTAACCTGACAGATTGtgttgttatgtttttgtgttatttacttGTAGCCTGTCTTTTATCCatagtaaataaacaaa

Function

GO:

id name namespace
GO:0006520 cellular amino acid metabolic process biological_process
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0016829 lyase activity molecular_function

KEGG:

id description
K01620 ltaE; threonine aldolase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013232 True 2855 mRNA 0.49 7 25479858 25485620

Neighbor

gene id symbol gene type direction distance location
AMCG00013234 socs3 coding upstream 55874 25421661 ~ 25423984 (+)
AMCG00013229 NA coding upstream 95386 25375516 ~ 25384472 (+)
AMCG00013231 NA coding upstream 113312 25357317 ~ 25366546 (+)
AMCG00013228 LOC108274176,LOC108426518,LOC103022618 coding upstream 128120 25331132 ~ 25351738 (+)
AMCG00013230 NA coding upstream 155418 25319106 ~ 25324440 (+)
AMCG00013237 NA coding downstream 65975 25551595 ~ 25554794 (+)
AMCG00013243 slc38a10,LOC107749860 coding downstream 261045 25746665 ~ 25775438 (+)
AMCG00013244 LOC105892758 coding downstream 292292 25777912 ~ 25784972 (+)
AMCG00013252 ttyh2,LOC106589617,LOC106610147 coding downstream 774420 26260040 ~ 26312137 (+)
AMCG00013254 dnai2,LOC106610195 coding downstream 828666 26314286 ~ 26318743 (+)
G42950 NA non-coding upstream 103759 25089170 ~ 25376099 (+)
G42925 NA non-coding upstream 463492 24991455 ~ 25016366 (+)
G42922 NA non-coding upstream 553113 24924791 ~ 24926745 (+)
G42906 NA non-coding upstream 597800 24879764 ~ 24882058 (+)
G42857 NA non-coding upstream 711618 24768015 ~ 24768240 (+)
G43062 NA non-coding downstream 22571 25508191 ~ 25511347 (+)
G43063 NA non-coding downstream 26588 25512208 ~ 25512901 (+)
G43064 NA non-coding downstream 36858 25522478 ~ 25524992 (+)
G43078 NA non-coding downstream 102859 25588479 ~ 25592334 (+)
G43079 bahcc1,LOC107722173 non-coding downstream 108751 25594371 ~ 25594607 (+)
G42858 NA other upstream 709710 24768424 ~ 24770148 (+)
G42846 NA other upstream 730463 24747492 ~ 24749395 (+)
AMCG00013198 NA other upstream 1148004 24241269 ~ 24331854 (+)
AMCG00013147 NA other upstream 3219042 22248497 ~ 22260816 (+)
G42453 NA other upstream 3234068 22242429 ~ 22245790 (+)
AMCG00013236 NA other downstream 27733 25513353 ~ 25521681 (+)
AMCG00013248 NA other downstream 307785 25793405 ~ 25798013 (+)
AMCG00013251 NA other downstream 667616 26153236 ~ 26161139 (+)
AMCG00013255 NA other downstream 769354 26254974 ~ 26258982 (+)
AMCG00013257 LOC106612075,LOC107560953 other downstream 882175 26367795 ~ 26396705 (+)

Expression


Co-expression Network