AMCG00013233


Basic Information

Item Value
gene id AMCG00013233
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 25385739 ~ 25418578 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013233
TGTGGTCCTTCAGCGAGGACAGTGCACCACAGCCCAGCAGCCCGCAGGTACAGTGCACAGTGTGTTCGTGCGGGCGGGCTGTGTTGACAATAAAGTTTTCCGGTTCAAGATCAGCGACAGCTATGGCGGCTCCCATGTCCTGGAGGAGACTGATAAACTCTGTCTACACGCCGGCTCTGGCCGGTGTTTTAACCCGCATGTCCGATAAACTTTTCCGCAGTCGGGACCGCAGGCGAGGgtcctctgtgctgctgctggccCCCCTGCTGGCCGAGGCGGACCCCGTGCCGGCTGTGGCCGAGCCACAGGCCCCCAGGCCCACAGGAGTGGGGGGGCTACCCCGGCATTTCCGCTGGATTGCCAACCAAGTGCCAGCTTTCCGAGTCTCGGGCCGGCAGATCCGTGTTCTCCACTCCCCTGATGAGTTCTACCAGGTCTTGAAGacgCATATCAAGACAGCTAGGTCTCGAGTCGTGATGGCCTCCTTGTATCTAGGGACGGGACCCCTGGAACAACAGCTGGTCGACTGTATAGAGGAGGCCCTAGAGAATGCAAAGAATGAGGACTTATCTTCTGACCTCAAGGTCTCCTTTCTTCTGGACTATACCAGGGGCTCTAGAGGTAAGAAGAACTCTCGCACCATGCTGCTGCCGCTCCTGCGGAGGTTTCCTGGCCAGCTGCGCGTCTCTCTGTACCACACGCCCGACCTGCGTGGCCTGCTTCGGATACTCGTCCCCGAGCGCTTCAACGAGACCATCGGCGTGCAGCACATCAAGGTCTACCTGTGTGATGATGACCTCATCATCAGTGGAGCGAACCTGAGCGACTCCTACTTCACCAACCGGCAGGACCGCTACGTGCTGCTGCAGGGCTGTGGGGAAGTGGCTGATTTCTTCGCTGACCTGGTGGGAGCAGTGGGGGACACCTCTCTGCAGCTGGAGCCTGATGACACTGTGAGCATGGAGGAGGACATGTTCTCCGCCTCTGCTCAGCAAAGGATCATGGAGGTGGTGAACGTGGCGCGTGCCCAACAGTGTCTAAAGGGCTCTGAGATGATGCCGACGACAGACTCTGATGCTGAGGACTCAGGGCCAGCCCAAGGGGACACATGGGTTTTCCCTCTAGTGCAGATGAAACCCCTGGGAATCCAGCTGGATGAAGCAGTGACCAAAAGACTGTTGACGGAGGCGGGAGGTGATTCTCGGATCTACCTCACCTCTGGTTATTTCAACCTGACGCGGGCCTACATGGACCTGGTCCTGGGCACCTCCACCGACTACCACATCCTGCTGGCCTCGCCTGAAGTCAACGGCTTCTTCGGTGCCAAGGGGGTAGCGGGTGCCATCCCGGCCGCTTACATTCACATTGCCCGCCAATTCTACAACAAGGTTTGCCACCTGGGCCAGCAACAGCGCATCCGACTGCATGAGTACCACCGCAGCAACTGGACCTTCCACGCCAAAGGCCTGTGGTACTATCTGCGGGGGAGTGATCGGCCCTGTCTAACTCTCATTGGCTCACCCAATTTTGGCTACCGCTCTGTTCACCGGGATCTGGAGGCTCAGATTGCCATAGTAACAGAAAACCAGGAGCTACAGTCCCAGCTACAGCAGGAACAGGAGATGCTGTACCACTGCTCTACTGAGGTTTCCACATCCACCTTCCAGCAGCCCAACCGCTACGTCAAGCTGTTGAATGTCCAGATGAAGGTGGGTCCCCAGAGGCAGGCTTTGTACACTGGGCATTCACGGGTGTTCTTGCTCTCTTGCCTGTCCACTGGAATTGCTTTAATGAACATCACTGGCATGGATGGGGTTAACTCTTTCAACCTGGCATCTGCAATCACCCCTGTCTGCGTGTCCCAGCGGCCCCTGTAAGGCACGTCCACGCCTCCAGCGTCACCCGTAAGAAGAAATAATTTGCATCTTCACCAGaggtacattatattttaaaagtaatttatgcAGTCGTTCCCAGTGGTGTGGTTATTACTGTGGTTTGCATTTCAGTTACTGTAAGAGAATCCTAAACTGTCTGACAGGTACAATAACATGGCTTTTTTCATTAAGTTCATGCAGGACTCTTTGGCTGCCTTAGTTCCATATCAGTTGACATTGCTGTGAATTATTAGTGCTAtgtcacatttttcatttttaaactgtattaagTCTGCAACAACAATTTCAGCTCTGCCTCATAATACATCCAACAAGGTACTGCCCCATGCTATAAACCATGCTTTCAGCTGAGGTCTCCTACAGGAAGATGAACTAAAATACCTTCATTTCTCAGCgtcaagcttttttttattcttacaaGTGCAGATAGTAACCCTGGAGTGatattgtttgtataaaagaATGCCTACGTCAGAGGTTatgaaaacaatgtgaaataGCCTTATTTGTGTGTGCTATATGTGATCAGCTGAGACGTGATCCTACTGTGGTTCTTAAAGCCCGAGCTGAGTATCGCCATAAACACTTCTGACATATGGATCTGAACCTGAACAGATACGTGAAAAGTCTGGTGATACGAGGCAGAGAGAGGCCTTTACTACACAACATACAACAACACCTCAAAGCCATTTGTGTTTAAAGAGAAGTGTAAAGaatgcatttttcagtttcaattctgtatttgtttttta

Function

GO: NA

KEGG:

id description
K00995 pgsA, PGS1; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013233 True 2650 mRNA 0.52 10 25385739 25418578

Neighbor

gene id symbol gene type direction distance location
AMCG00013235 NA coding downstream 27238 25357680 ~ 25358501 (-)
AMCG00013224 NA coding downstream 274304 25099351 ~ 25111435 (-)
AMCG00013217 NA coding downstream 353966 25030591 ~ 25031773 (-)
AMCG00013211 notum1a,notum,LOC107732149 coding downstream 442293 24927137 ~ 24943446 (-)
AMCG00013212 NA coding downstream 464533 24920301 ~ 24921206 (-)
AMCG00013240 NA coding upstream 74799 25493377 ~ 25504516 (-)
AMCG00013238 NA coding upstream 89619 25508197 ~ 25512871 (-)
AMCG00013239 NA coding upstream 108064 25526642 ~ 25537475 (-)
AMCG00013242 NA coding upstream 266891 25685469 ~ 25685725 (-)
AMCG00013247 NA coding upstream 378642 25797220 ~ 25803654 (-)
G42993 NA non-coding downstream 9416 25045378 ~ 25376323 (-)
G43044 NA non-coding downstream 16676 25367598 ~ 25369063 (-)
G43040 NA non-coding downstream 34001 25289470 ~ 25351738 (-)
G43011 NA non-coding downstream 245996 25136776 ~ 25139743 (-)
G42800 NA non-coding downstream 1163001 24220651 ~ 24222738 (-)
G43072 NA non-coding upstream 100233 25518811 ~ 25519993 (-)
G43100 NA non-coding upstream 169336 25587914 ~ 25588261 (-)
G43165 NA non-coding upstream 701119 26119697 ~ 26119919 (-)
G43171 NA non-coding upstream 729838 26148416 ~ 26148633 (-)
G43184 NA non-coding upstream 836418 26254996 ~ 26257823 (-)
AMCG00013223 tk1,kith,LOC102792372 other downstream 218966 25162157 ~ 25166773 (-)
G43001 NA other downstream 307495 25075393 ~ 25078244 (-)
AMCG00013216 NA other downstream 356735 25025738 ~ 25029004 (-)
AMCG00013204 mafg,LOC108241257,LOC106533856 other downstream 483311 24879641 ~ 24902428 (-)
G42749 NA other downstream 1538262 23844083 ~ 23847477 (-)
G43070 NA other upstream 97502 25516080 ~ 25516963 (-)
AMCG00013241 NA other upstream 169909 25588487 ~ 25628252 (-)
AMCG00013245 NA other upstream 357796 25776374 ~ 25777723 (-)
AMCG00013246 NA other upstream 367565 25786143 ~ 25791759 (-)
AMCG00013258 NA other upstream 1061033 26479611 ~ 26484414 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000055_01433889_01450832 PGS1 coding CI01000055 null 1433889 ~ 1450832 (+)