AMCG00013236


Basic Information

Item Value
gene id AMCG00013236
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 25513353 ~ 25521681 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013236
ATGGATACAGTTGACACGCAGTCTATGAGAATGGCAGGCGAGAGGTGTTCCGTGGATTACCTGGCCACGTTTCAGTGCCCGTCACGCCTAGCCCAGGTGGTCTGCCGAGGGACTGACGTCATTCTGTGTAACGGGGGTGAACGTgctgtttttgtttttggtggcCGTGTTAAACAGCTGGCGAAGAGTCTGGATGGGCAAAGTGTCTACGCTCTGTGTGAAAATGATGGGATTTACTGCATTTCCCTGCAGCAGCACAGGAGGAAGCTCCCATCCTCACCCTGTGAAGGAGACACCCTGGTTCAGCTGGAGGTGTCCCCTGATTCCTGTGCACTCAGAGACCCAGCTGTCTGCTCCTTCTCTGTACTGGAGGAGGTATTGGTGGCAGTGGCATGGGGTGGCCATATGTGGAAAATCAGTTTTTATAAGCTCCCTGAGAGTCCCATGACTTCCTGTAGAAAGCTAGAAGAGCTGCAGGTCCCCATTCTTTCTACAGGTTGCCCCAGCATTGGAGCTGAGGACAGGGGTAAGGATAAGGACGTGCCTCCGTCTCTGTGCTGTATATACCCCAGTGGAGCCAGTCCAAAGCCCTCAGAGGGTGACGGTCTCTACTCCCTGGAGCCCATTCTTTTTGGGTTGCTCTTTGGCGTGGACGCAGCCCTGCTCTCCTCCCCCGTCATCTTGTGCGGCCTGCCCGACGGGCGGCTGTGCTGCCTGCCTGTGCGACTTCCAGGGAAGCCAGGGGACGGGGTTGAAGAGCGCAGAGTGAAGATGCTCTTCCACCTGGGCCAGCCAGTGGCCTTCATCGGAGCCTCACTGGccagggagaaagagaaagggccCTGCTGCCTGATAGCGGTGGGGAGTAGTGGGAAGGTGTTGCTGGTCAAAGCTGAGGGGGGGGTGGATGGCCGAGTTGCTGAGTTCAAGGAGCGCTGCCTCTCTGGCCCTGTACAGAGTGCATGTCTCAGCAGCAGCCACCTCTATTACAGTACTGGTTCTGATCTACTGGCTCTGCTGCTCGGCTCCCCCGCTCCTGAGGCTGCGGACTTGACCCAGAGGCCAAGCTCAGAGCAGGCTCTGCAGCCCCCAGCCCTGCAGCCCCCCATCAGCCTGAATGTCTGCGGCCTCCTTGCTTTGACCAAACCCACAGAGACGCCTACAGGGGCTGTTCAGCTGCTTGCTTTTTCTCTCAGAGGGAGGCTGCTGAGGGTAACTCTGCCCAAGAGGCCAGGTAGTGGTCATGGGGTCAAGCTGTCCGCAGCACAGGTTGGCCAGAAAATGAAGGACCTTCTTGCTGGCATTGGAAATGTCTCGGATAGAGTTTCCACTTTGAAAAGGCGCGTTCAGGAAAAGAATGACGCCCTGAGGAGCCTTAACCAGGTTTTCAACATCTGCTGCTTGCTGATACCAAATCAAAAGCAGGGAGAGGATGGAGCTCCCCGTTGCAAGTGCCCAATCAGCTGCCGCATTGCTGCCAGGTGGAGCCGCTTACTGCAGCAGGACTCTCTGCTTCTGAGCTGCTTTCTAGAAAACTCCAGTGACTATGTTCTAGAACATGGCTGGACACTTTGTATACAAGTGTTCCCCCCGCCTTACCCTTTGACCCCTAAGGGTGAAGGTTCATTCAGAACTTATTCCTTTCCCTTTGATAAACTGTTGCCGGGTCAAAATCTGGAAGTGACCCTACCGCTGGCTACGGACAGTGAGTTATCATTGCCTGTGTCCGTCTGCTGCTCCCTGACTTACACTTTGCCAAGCATCCTGAGACAGGAGGGAGATGGGCGGTCTCTGAGCACCAGCACACCCCTCTGCCAGCTGTTGAAAGATGGCGGCTGCATTAGCCTGACTGTGGACACCTTCATAGTGGACTGGTTGGACTGTCTGTGGATCAATGGTTCTGCAGCTGAAGGGGGGAGCTCGAGGTCCAAGTCTGGCTCCCCTGCAGACCCAGTCCAGACCCTCCTGAGCTCTTCCAGAAATGTCCCTGGACAGACCTGGGACCATACTCCTTTGAGAACAGCAGCACGTCTCGCTTCAGACAGGGGACCTTATCTCGCGTCCCTCAGAGTGTCTTCAGAGCTGCTGAAAACTGCACTGAAAATCTCCACCCCAGGCCCCCCGTTGTCGATTGCCACTCTGTGCTGGCTGGTGTCCAGCAACCTTGGAGGGGAGTTGGCTCGTCAGGACTGCCCCCTGCTGTCTGCGGTCTGTCCCGGAGGGGCCACACTGAGACTGCTGGCCAAAGAGGTGAGCGTGACTGATTTTTGTGCCGATGGACCAATCACCACTGTGGAGATCCAGATCGAGAGCTCTTCGTTGGCTGAACTGTGTGGGCTTCATCATGCGGTGTTGCGCCGTGTCCAGACCCTGTTGAAGGAGGGGGTCCCGGATGCTGGCGCTGTGCCACGGTTACAAAGACAGCGCCTGGGGTGGCTCTTGCAGCATGCTGAGGCTCTGTCTGAGGCAGTTCAGGAGGCTCGCGGACACAATGCCCTGGGTTTGGGGATGTCGAGTGGGACAATGGAGAGATTGCTCTCCGCCTACCAGCAGCTGAGGAACTGCCCCCTACTGATCCTCTGAGGGCCTGCTCTGGGGTGCTGAAGGCAGCCGCCATGCCCCATGTAGCCAGGGAGTGGACTGCCCTGGATTATTGCATGTCTCTCTCCACACCGGATTATCACTGCAACCACCTGTAAAGCTGTAGAGGTGTGTGGTGCGAAGGCAGGTATGTCACATAGGATTGCATGAAACAACCAATCCTTTTAGGGGAAAGAACCACCCGCACTGACATCTGTTAAAAAACGCTAAGAAGACTGACCGCATTCAAAGCAGCCCCTACATGTCAGTCCCCAAGAGGGATCCTTTAGTACGAGGGTTAATGGGTGAATCTGTCAGATTGTCCAAAGTCCGACGTGCAAAACACAAGTGCAGTACAACCTATGCGGGACACTTACTCCGCAGTCATGCGGTTTGGACCTTGCCAAAGCATTGCAGTTTAATCAGCCTTAAGCTTCTTATTAAACTTGTAATCAAGGACACATGCCATCTCTTTCACCTCCTGCACACATCCAGATTTTTTCCTTAACCATGGGACTAGAACaaatgcagtaataataaatcattcaatGATATGAAGATGACATCATCCAAACCCGTGCGGTGCATTGTGCCTTATTCCACACAGACCATGTAGGAAACTAAAATATCGGAGAGGACAATTGAAATAGAAGGCTGCAGGCAGTTCACCAAGTCATTTTCTACTGCAGAGCTGCTCTGTTGTGTGCTAGTCAAATAATCAGCATGTGTtggattgtgttgtgtgtgagagtccAAGCGAGTGTAACAGGTGCCGCAGTCAGGTTGTCTACCTGAGTGTGAGGCATGGCTGAGGTGGAAATATTATAATGCTGCTgggcttgtttgtgttttaaggCCATCAGCCTGTActtttttcaattcagtttggCTTCATCTAAATTTAGACACTTCTGTTGTTCCTCCTGTCTTTTAtcgctctatctctctctctgttccaaGTCTAAAAGCATTGTTTACTAATCACAAACATTCCAAGTATTGACATTATCATTATGGGCGGCACAGTGGTATGGGTTTTCTCtaggcactccggtttcctaaCACCGTCCAAATACATGCaagttaggttaattggccatgctaaattgccctgtgtgtgtgtgtgtgtgttgcccagcgatggcctggcatcccgtcctgccttgtgccctatgcctgccgggattggctccggcttccccgcgaccctcaccaggataagcggtttcggaAATCGATGGATggacattatcattattaacaGTTAGTGCTAATGTAGTTAAGTCAGCATGGGATATAGcagacattttaattcagtaaaaCAGGCCCCACATTAAAACATACAGACTTTTTAAGTTATTGGATTCATCAAACCATTAAGTCAACTGTTTGGTCAGAAAATTAGAAGTGCACTAATACAGTTCTCCAGTAGAGGACAGCAGAACCAAGTCCAGCATCAGAATATTTTTTGGTGATGTTCTTTGACATTCCAATTTTATCTTCAAGCCATGGTCTTTGTACACagaaatgtatgcatatgtacACAACTGTTCCTTTATGGCTCCAGAagtggaaaagcaaaacaatgctATCTCTAATCTAGACTGTGTGAACTAGAATTTGGGTCAAAAATTAttatctgacacacacacacacacaacacactgcctCGCTCCACTGAGGTAAAGTGAAATTCTCATATGTAGTCTTTGTAAACCCAGGaatgttgttttaatactttttatagatttatttattttaattacttgcaTTAAACTTCAGCTTTTTGAACCTTCTAGGCACTCTTAATTAACccctgcttttgctttttaactCACCATGTAAGGGTTAACAAATAAGTGTCAACACATGTTGTACTGCATTTGCACACTCACGGTTGATGATCATTTGCCTGGTTGATTCCCAGCATGCTGCTGAATGCGGATAAACCACTCTGGGTCTCCAGTCATATGCCTTAAGTCACTCCACCCCTGTGAATTACCTGGTTGCGGATCAATCTTTCTTCCTGCTCATCTGCACGATCTAGTCTTCCATGTTATTTACCAGAAGATAAAATGTATGATAAAATACCATTGAATTTACCTGAAGATGACCAACCATGACTTGCACATAGACTGTAAAAGGAGACGGATACGTTTCAACAATGCATAGGTTCCTTTGTAGAAATGTGGGATGCGTCAAATATTGGGATTCACTCAAGATTTTTCGTTCTCCAGAAAAAGGCCATAAAAACAgcagatgtgtttttaaaaggaggAATTCTGAAAAGGGGAAGAACATAGATCTCTGCACACACTCCCCGTCTCCTCTGCCCCAGTACTCCACTTCTTGTCTTGTCAGAATCTTACCCCCCACCCTTGTATGCATTCCATGTTCTGGGACACTGTTGAAAACTGTCTGCTATTTATCAAGAAACTGCTCAATCATCCTGAATGAAATGCTTCAGGGGATTAATCTCCTGAGTCATGTTTTTGtggatttttccattttaaataaaaaaaacagcaacatccGCCCACCTTCTCTTGTGAAGACAAACTGGTAGAGTAAAC
>TU53706
aagcggtttcggaAATCGATGGATggacattatcattattaacaGTTAGTGCTAATGTAGTTAAGTCAGCATGGGATATAGcagacattttaattcagtaaaaCAGGCCCCACATTAAAACATACAGACTTTTTAAGTTATTGGATTCATCAAACCATTAAGTCAACTGTTTGGTCAGAAAATTAGAAGTGCACTAATACAGTTCTCCAGTAGAGGACAGCAGAACCAAGTCCAGCATCAGAATATTTTTTGGTGATGTTCTTTGACATTCCAATTTTATCTTCAAGCCATGGTCTTTGTACACagaaatgtatgcatatgtacACAACTGTTCCTTTATGGCTCCAGAagtggaaaagcaaaacaatgctATCTCTAATCTAGACTGTGTGAACTAGAATTTGGGTCAAAAATTAttatctgacacacacacacacacaacacactgcctCGCTCCACTGAGGTAAAGTGAAATTCTCATATGTAGTCTTTGTAAACCCAGGaatgttgttttaatactttttatagatttatttattttaattacttgcaTTAAACTTCAGCTTTTTGAACCTTCTAGGCACTCTTAATTAACccctgcttttgctttttaactCACCATGTAAGGGTTAACAAATAAGTGTCAACACATGTTGTACTGCATTTGCACACTCACGGTTGATGATCATTTGCCTGGTTGATTCCCAGCATGCTGCTGAATGCGGATAAACCACTCTGGGTCTCCAGTCATATGCCTTAAGTCACTCCACCCCTGTGAATTACCTGGTTGCGGATCAATCTTTCTTCCTGCTCATCTGCACGATCTAGTCTTCCATGTTATTTACCAGAAGATAAAATGTATGATAAAATACCATTGAATTTACCTGAAGATGACCAACCATGACTTGCACATAGACTGTAAAAGGAGACGGATACGTTTCAACAATGCATAGGTTCCTTTGTAGAAATGTGGGATGCGTCAAATATTGGGATTCACTCAAGATTTTTCGTTCTCCAGAAAAAGGCCATAAAAACAgcagatgtgtttttaaaaggaggAATTCTGAAAAGGGGAAGAACATAGATCTCTGCACACACTCCCCGTCTCCTCTGCCCCAGTACTCCACTTCTTGTCTTGTCAGAATCTTACCCCCCACCCTTGTATGCATTCCATGTTCTGGGACACTGTTGAAAACTGTCTGCTATTTATCAAGAAACTGCTCAATCATCCTGAATGAAATGCTTCAGGGGATTAATCTCCTGAGTCATGTTTTTGtggatttttccattttaaataaaaaaaacagcaacatccGCCCACCTTCTCTTGTGAAGACAAACTGGTAGAGTAAACAGCACTTGCAAAACATTCCTGAGCAAGGCCATCTCTTTAACCCTCTTGCTCCAGTTATGGCTCCCCCCTCCTCTTTCCCAAGggtacaaagaaaaacaaatattttatagttgttgtttttttgttttattcatcagttgttttggaaatgttgtAGTAGC

Function

GO: NA

KEGG:

id description
K10993 FAAP100; fanconi anemia core complex 100 kDa subunit

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013236 True 5153 mRNA 0.50 10 25513353 25521520
TU53706 False 1515 TUCP 0.38 1 25520167 25521681

Neighbor

gene id symbol gene type direction distance location
AMCG00013232 NA coding upstream 27733 25479858 ~ 25485620 (+)
AMCG00013234 socs3 coding upstream 89369 25421661 ~ 25423984 (+)
AMCG00013229 NA coding upstream 128881 25375516 ~ 25384472 (+)
AMCG00013231 NA coding upstream 146807 25357317 ~ 25366546 (+)
AMCG00013228 LOC108274176,LOC108426518,LOC103022618 coding upstream 161615 25331132 ~ 25351738 (+)
AMCG00013237 NA coding downstream 29914 25551595 ~ 25554794 (+)
AMCG00013243 slc38a10,LOC107749860 coding downstream 224984 25746665 ~ 25775438 (+)
AMCG00013244 LOC105892758 coding downstream 256231 25777912 ~ 25784972 (+)
AMCG00013252 ttyh2,LOC106589617,LOC106610147 coding downstream 738359 26260040 ~ 26312137 (+)
AMCG00013254 dnai2,LOC106610195 coding downstream 792605 26314286 ~ 26318743 (+)
G43063 NA non-coding upstream 452 25512208 ~ 25512901 (+)
G43062 NA non-coding upstream 2006 25508191 ~ 25511347 (+)
G42950 NA non-coding upstream 137254 25089170 ~ 25376099 (+)
G42925 NA non-coding upstream 496987 24991455 ~ 25016366 (+)
G42922 NA non-coding upstream 586608 24924791 ~ 24926745 (+)
G43064 NA non-coding downstream 797 25522478 ~ 25524992 (+)
G43078 NA non-coding downstream 66798 25588479 ~ 25592334 (+)
G43079 bahcc1,LOC107722173 non-coding downstream 72690 25594371 ~ 25594607 (+)
G43080 NA non-coding downstream 73016 25594697 ~ 25595941 (+)
G43081 NA non-coding downstream 79132 25600813 ~ 25601177 (+)
G42858 NA other upstream 743205 24768424 ~ 24770148 (+)
G42846 NA other upstream 763958 24747492 ~ 24749395 (+)
AMCG00013198 NA other upstream 1181499 24241269 ~ 24331854 (+)
AMCG00013147 NA other upstream 3252537 22248497 ~ 22260816 (+)
G42453 NA other upstream 3267563 22242429 ~ 22245790 (+)
AMCG00013248 NA other downstream 271724 25793405 ~ 25798013 (+)
AMCG00013251 NA other downstream 631555 26153236 ~ 26161139 (+)
AMCG00013255 NA other downstream 733293 26254974 ~ 26258982 (+)
AMCG00013257 LOC106612075,LOC107560953 other downstream 846114 26367795 ~ 26396705 (+)
AMCG00013265 LOC107672452,LOC107711237,LOC107567237,LOC107670476 other downstream 906265 26427946 ~ 26478544 (+)

Expression


Co-expression Network