AMCG00013243 (slc38a10,LOC107749860)


Basic Information

Item Value
gene id AMCG00013243
gene name slc38a10,LOC107749860
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 25746665 ~ 25775438 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013243
AAAACACGTCGTGACTGTCAGGGTCTCTGCACCGCTGTTATTTCTCGCCCGGTGTCTGGCGATTTGCACTGAACGTCGATCGGGGCGTTTCGCCACCTGTGCGCCAGTACCGATGGTGACGTAAGCGTTACTTTTTTGGGGGTAATGCATTGAGTGGTTTTCGCCAATTAGCTGGAGTATGCtattaaaaagttattaaaaccAGTTTGGAGGGGCTGTGCAGGTAGTCGTTTGGCTGCTGAGGGGTCCTTAGTCTGACCGAAAGCCTTTCTGGGCGATTTGGCCAAACTTAGTCAGTCACGTTGCTCTCTTTATTTCCCTCCATCGCCACGTCACACATGTCAGAGTGACACAAAGTGAGAAGACACTACACCCATTTTGGTCGgggtgtgttgttttttggagttgcactttgttttggaGCAATAGTCAAACACCGGCATCTGCATTGATTTCACTTGATCGAATATTAAATACGCCACCATGACGGCGTCCAACTGGGGTCTGATCATGAACGTGGTGAACAGCATCGTGGGAGTCAGCGTCCTGACGATGCCCTTCTGCTTCAAGCAGTGTGGTATTGTCCTGGGGACTCTGCTGCTGTTCTTCTGCTCCTGGATGACCCACCAGTCCTGCATGTTCTTGGTTCACTCGGCCTGCAGCAGCAAGCGAAGGACATACGCTGGACTGGCCTTCCACGCGTATGGAAAAACAGGGAAAACCTTGGTGGAGACAAGTATGATTGGGCTGATGTTGGGAACCTGCATCGCCTTCTATGTCGTGATCGCTGACCTGGGGTCCAACTTCTTTGCGCAGATGCTGGGTCTTCCGgtgACGGGGAGTTTCCGCGTGGTGCTGCTCATCGCCGTCTCCCTGTTCATCGTGCTGCCGCTCAGCCTGCAGAGGAACATGATGTCCTCCATCCAGTCCTTCTCTGCCATGGCGCTTATGTTCTACACACTCTTCATGTTTGCGATAGTGTTGTCTTCACTGCGTTACGGGATAATCAGTGGGTCATGGGTGGAGAAAGTGCACCTGTGGCGTGTTTCGGGGGTCGTTCAATGCCTGCCAATTATTGCGACGACCTTCTGCTGCCATCCGCAAGTGCTGCCCACCTACGACAGCCTGGAAGAGCCCTCGGTCAAGAGAATGAGCACCATCTTCACATCGTCCCTCAATGTGGTCACAACCTTCTACATCACAGTGGGCTTCTTTGGCTACGTGAGCTTCACGGAGAACATCGCAGGAAACGTGCTGATGAACTTCCCATCTAACCTGGTGACGGAGATGATTCGTGTGGGCTTCATGATGTCTGTGGCCGTGGGCTTCCCTATGATGATCCTGCCCTGCCGCCAGGCCATCAACACCATGCTCTTCGAACAGCAGCAGAAGGATGGCACCTTCGCAGCTGGGGGATACATGCCCCCCCTCCGGTTTAAAATGATCACACTTTGCATCGTGTTTGGTACCATGCTGGGGGGAATTCTCATCCCCAATGTGGAGACCATCCTGGGACTGACTGGGGCCACCATGGGGAGTCTTATCTGCTTCATCTGCCCCGCCCTCATCTACAAGAAGATCCACAAGAACGGGCTCTCGGCTCAGCTGGTGCTGTGTGTAGGCCTGGGGATCCTGGTGATCAGCACCTTCACCACACTGTCCATTTCTGCGAGTGAGCCAGTGAAAGTGGAAGTCCCTGTTGCCTTGGAGGAATTGCCCATCAAGGACAAGCTGGCAGAGCCTATCAAGATCTCTGTTGAGAACCCAGTGGTGCCTGACAACGACGATGGGCAAAAGAAGCCTAATCCTCCCGGGGAGGTGGGGCAGGGCGAGAGGGAGCCGGCAGAACCCCCCCAGATCAAGGGTCCAGTGGAGATCccagagaggaagaagaaggaggaggaggtccAGTTAGACCGGCCTGATGCAGGTATGGCCCAACCGGTCGGAGAAGCCCATCGCCACGAGCCGCCTATCCCTCACGACGAGGTGATGGTGGACCAGAGTAAAGAcaaggaggagctggaggagaagagagaaCTGGAAGGTGACAAGGGGGCAGGGCAGGAGCAAGTGGGGGCCCAGGATGGGGAGCAGAAGGAGGCCGTGGTGGAACAGGGCGCCCAGGCAGTGGAGGTGCACAAAGAGAAAGAAGGGGACTTGAAGCCGGGTGAGCACGCCAAGGGGAAGGTGGCCGAGCCCGGGCAAGAAGACCAGGATAGGAAGGAGGGGCAGCAAGGAAAGGTGGAGAAGCCAGCTTACAAGGACCTCGATGGGGCCGGGAAGCAACAGGCGTCGATTGAGAAAGAGCATGAAGGGCTGAAGCCTGCAGTAGTGGACAAGGCCCTGGAGCAGCCAGCAGGGAGAGgtgatcagCTGCCCCCTGAAGCAGAGGATCATGGGCAGGGAGGGGAGGTCTTGGCTCCGGAggacagagaagagagaaacCCCGAGGTGAAGGAGACAGGACAGGAGGACAAGATGGACGAGGCCGAGCGGGAGGGCAAACTGGACCACAATGTGCTGCTGCAGGTGATCAaggagcagcaggagcagcagaagAGGCTCCTAGACCAGCAAGAGAAGCTGCTGGCCGTCATCCAAGAGCAGCACAAGGAGATCCACCTGCAAAAACAGGATGGAGAGGAGGAGCATCCCCCAGAGGGACTTCCAGAGGGTCAGGTGGGCCCAGGGGAGGAGAAGCCGGGGGAGAACGAGGAAAACGAAGTTCCAGATGCCCAGGGTGGGGGTGTGGATAGGCAGGTGGGAGCAGGAAGAGGTGCCGCTCTGGGCGTTGAGGAGCGGGATGGGCATCCTAACGGCAATGAGCTCCCAGGTGCTGTGGTGCAACACCAGAACAAACCTGCCCACGACGACAACTCTGACCACCATGATGTGGAGCAGGCCATACACGGTGACTCTCAGGGCGGGGGGAGCAAAGATGAGAAGCCCAAGGTGGCACACCCAGACTCTGCTCCCAAGCCAGTGAATGGCAATCAGGGGCTTCTTGAGGACCAGCCCGGCAAGGCGCAGCGggaacagcagcaacagcagcagcagcagcagcagcagcagcacagggaAGCCAGTGATGCCCATCAACATGAGGCAAGACCGGACATGAAAGCTGAGGTGGCAGCAGGTGGGCAGAGAGAGTTGGGAGCGAGAGGGGTGCCTCTGGGGCCAAAGCAGCCTTCAGCAGAAGAAATCAAGCCCAAAGCCAAGCATGAGCAGCAGGTAGGCGGGGCAGAAGGGCCGCCGGATAGGAAAGCGGACCATGTGGAGAGACAAgaccaagagagagaaaaggagagagctGAACAACTCCAGCGTGCCAGGGAGGCCCAGAAGGCGTTGGAGGAAGCCAAGGCCAGGGCCAGGGAGGCAGAAGCCAAGGCCGTGGCCAGGGAGGTGGCGGCGGATGCCAGAGCCAGGGAGGTGGCTGTGGAGGCCAAGGCCAGGGAGGAGGTGGCGGCAGCAGAAAGGCAGGAACCCATGAAAAATGGTGGACGGGACCTAAAAGAAGACACCCAGCTAAAGCAAGAGCCAGCAGCCAAGAAGGAGGCACAAATGGATGAAAGGCAGTTGCCCAAAAAGGAAGAAGGCCTGGACATGAGGCAGCAGCAGGAGTGGGTTCCCAAGGAAAATCCCCCCAGAGACCTGGGGGGCATGGACCTGAAGAGGAGACGGCGAGAGGTGGATGCCGTGGGGGTCCCGGGACTGGAGCCCCTGTTGGAGCTGGGGGGGTCGGACCTGCATGCTGCCCTGGAAGGCCAGCTGCTGGGGGGGGCCCTCGTTCACACCCGGCAGATCAAACAAGCACcagagcctgagagagagagataatgcATGCCTCACCAAAACCCGGGACCTCTGCACTGCCAACGCACAACACCGAGGCAGTTGTGCTTTTGGGGAACCCAAGCCTCAATACCAAATGCCCTGAGCTCCTTAAGTTGCCTGTTCCACATGGTTCCGGCTTCTCCCACATTATTCTTCGCTTGTAGCATCTGCAGTAGCTGCCAACAACAGAAATGGTTCTTCCTAACAGGGCAAGATTTCAGCATAAGAGCAGTTCACCCTGAGGAGAATCCATTTGCTCGACAATAGTCAAGTGCTTCACATCCGTTATCACAACATGATCAGCATATTGATTTGAGATACCGGAACCTGCTCTCTTCTGTCAGTGTGACTTGTGGGTAATTTACAAGGGCTGTTACATATTGGCCAAATCTTGCAGTGGAGTGTTCTGGGTAAAACGTTGGCGTTCGAAGTCCAGCACTTAACTTCATTCATATCAGTCAGCTTTAATTGTTGTCCTCgaccacaaaaaaataagtcaaCTAAGAACTAAAATCTCAGTAGCTCTTGAGTACAGTAGGCAACATTATAAAGTGTCACGTGTTTGCAATGGgaggacattttgttttagctgTGTCGCTCCAAATCCACACACTGACCATACTTTGTGTACTTTTCTCTGACTCCAAATTCTCCTCCTCCAACAATTAGCTCTGACCCGATTGAGTGACTAAAACATTCCAAAAGCTTTGTGACATTTCTTAACTTTCCAGGCACAGACAATGGCACTTCGGTGCATAAACTCCACAGTCAGTCCTGTGTCAAAGAAATTGCTTAAATCCTCAGTGCTGTTAGCTATATCCACAGATCTTTTACTACAAGGTTGCCGAAACTGgattgtttttataaaagaCTTTACATTCTTCAAAtcgtgaataaaaaataaaaaaaatgacattttcattgaaaTCGGTTGGTCTCGTGTTGTCAGTCAGTCTGATAAATACTAAGGATAGGGTAGAGTAACCCAGAGTCATTAAAGTGTAGTCCCCAAGATACCAACATTCCTGTGCCTGTCGGTCACATCGGCAGATACTCTGCTATGTGGCAGAATTCTCCCACCTGATCAGTACCTTGTAGTTTAGAATTCCCTGAACTCTGTCATTAGGTTGTAAGGGAACATCTATCAATAAAAATGCCAAAGTGGTGAGAAATTGATTAGTTTAATGGATTTTTaattctccctctctcatatgtatatatgtttaatgtagCTTTTAGCAGATGTTTagtacacacatacagaacagGCAGAGAAGAAGGTAAcgcattcctttattttttgttttggaccAAATTAGGTCTAAGATTGCacccctgttttttttttttttgttagacatctggaaataaaaacacagaggtGCAATCTTAGACctaatttgttacattttaatatttcgtAAGCTTTTGCATTGAAGTTCATAATCTCTGGGTTTTAGTTCAGATCTTGTGCCTCCAATTGTGGATTCCAGGAGAATAAAAATGGTGTATATGAGTGacttttttcattctctttctctGCTTTTGCATCATGTTCCAGTTGTTTATAGTCTCTTCTGTGTCCATTTGCAACAACTCtttggtggttgttttttcctccatgTTGTTCATCTGGATTTGAATAGAATGTATAATAGTCCATTCACAGCAACCTTAATGAAAATCCCCAGATCCATTCAGATGGACACAGCACTGTGTGAATTGGGCCAATTGGTCTGTATTCTGGTCATCCGACTGCAGAAGCATAAACGGCAGAAACAAAACTGCTGAAGATAGAGAGTTAACCATAGTGATCCTGatactgtgatttttttctggTGCAAAAATACTTCTGGATTACTGTTCTTCACTTAGTTAATTAGGAcatcctttattattattgttgttgttattattgttattattaatttaaaaacgtCCTTTTAAGGAGATCAAGGACATTCATATTATTCTGCTTCTCTGTAAAAAGCTGCTTGCTCTGATGGGATATCTGCAGAACTATACAATAGATTGGAGAGAGAACAGAGTTTGTTTTCCGAGTTCACGACAGACATAAAGCGCTGAAGTGAAGACTTCGGAAACGTttagtgtgattttttttttttgccatgaTCACAACAACTGCTTTGATTTGATGTAGCTTTTGGACACCATGACTAATGAAGCAGGTATGTCTGCTCTGACCTTGCACACTTCTGGCTTGTACTTGAACccttctgaaaaagaaagtcCAAAAGCAGAAACATCAGAACTTGTGTACCCTCAAAAGACCAGGCAGCTTTTGTTAGCTTTTTCTCCTACAGAGCTAGAATCCACAGAACACCGAGCATTTCCAACCCAAGACAAATAGTGTTAATCTTTATGGAGCAAGTAAGACAAGCTATTGTATTCGTGCAGTTTAGGCTCCACCCAGGCAAATTGTTTAATGGTCCATAATCTCTCCTTACATTCCACATTGTGCTCCGAATGCTCTGTGTATCTTTAGTGCCTTATTGTAATTCCAATGTTCTTCAGAGTTTTTAGTTCATTgtgctgtatatactgtactgtttctgttttgtatagGAATACCGCTCTGTGCCTCAGTCTCCAATAGTGTTAAAATCGGCTCCCAGCAATTTAGAAATCAAACTGGACCAGCAGCTTCTGGAACCGTACTTGATCTGCTGATGTGCAATTCAAGGCTCACTGTGCAAACAAGTAACTTGTGTAGGCAGTATCATAAATATGTTCAGGGATCCTTCTACGATTTGTATTCCTTTCTTTTGCCTTATGTTTGAATACAATCAAGGCTTGTACCTCTGTTGATTTGAAGGATGCACAATCGCAGCATGGGTCCGCTCATGTTGAATAACTCTGGGAATGTGTTTGCATTGGTGTTGTTTGTGCTTTGTGTATACAGTGATAACCTGCTGTTATCCACTCCTGCACAACCATCCCAAATTCCTTCCTCTTCCTGTGAGCTGTGCATTGAGACTCCACTGTTGTTTTCCTAGCATCCTCTGTTTGTTACTGTAGGAAAAGGCTGAACTCCTGTGGTGAACATTGTTTAGGGTTTAATAATGTAAGTGGTTCTTATTTGTAAGTGCAATTTGGTGTTGAATTAAATGGTTTGATCACTTGGATGTGGGTTTAAAGTCAGTATTGTTGGGGACTTGTGTTAAAACCCCCAAACTCTCCCAGATCTCAATTGAGAACCACACAGTCAAGTTTGAGTTCCAGAAAAAGCTTTTATCCCATTGATGAACAGTAACTACTGATTTCTCAAAAGCTTGGCAAAATTGTATTTAGataattttctgtattttccaaACTAATAAAACTAccaatttgtttgcattttacttAAGAAAACACAGAACTAAGGATGAAACTGTTACATTACAACGATCTGGGCTTTTGGGATTTCggagcaaattaaatgtacGGTTTGTTTCTGAAATTGGTTCACGGGTTTGGAAGGGTGGTTCCTGTGTTCTTTCTTTAAAGGgtctttaaaaaatgatttgctaGAAGCTGAAAAcaatttattgtaaaacaataaactattttgaaaaggaaTGCTTTTGATTATGGTGTTTCTCTTGGATGTGGCACATTTTATATTGTCCCCCTTCGTCTAGTTTAAAACCAACTACACTATGACAATCCTAAACTGCCCGTCTTTGTCCTGACCAGAATAGGGAAGCACAAGGGTGTGAAATGCAA

Function

symbol description
slc38a10 Predicted to enable amino acid transmembrane transporter activity. Predicted to be involved in amino acid transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in notochord. Orthologous to human SLC38A10 (solute carrier family 38 member 10).

NR:

description
PREDICTED: putative sodium-coupled neutral amino acid transporter 10 isoform X1

GO: NA

KEGG:

id description
K14996 SLC38A10; solute carrier family 38 (sodium-coupled neutral amino acid transporter), member 10

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013243 True 7572 mRNA 0.48 16 25746665 25775438

Neighbor

gene id symbol gene type direction distance location
AMCG00013237 NA coding upstream 191871 25551595 ~ 25554794 (+)
AMCG00013232 NA coding upstream 261045 25479858 ~ 25485620 (+)
AMCG00013234 socs3 coding upstream 322681 25421661 ~ 25423984 (+)
AMCG00013229 NA coding upstream 362193 25375516 ~ 25384472 (+)
AMCG00013231 NA coding upstream 380119 25357317 ~ 25366546 (+)
AMCG00013244 LOC105892758 coding downstream 2474 25777912 ~ 25784972 (+)
AMCG00013252 ttyh2,LOC106589617,LOC106610147 coding downstream 484602 26260040 ~ 26312137 (+)
AMCG00013254 dnai2,LOC106610195 coding downstream 538848 26314286 ~ 26318743 (+)
AMCG00013253 kif19,LOC107560952 coding downstream 546328 26321766 ~ 26363091 (+)
AMCG00013256 chmp6,LOC108429718,LOC107690936,LOC106589902 coding downstream 623240 26398678 ~ 26404568 (+)
G43085 NA non-coding upstream 125426 25620937 ~ 25621239 (+)
G43084 NA non-coding upstream 126660 25619610 ~ 25620005 (+)
G43082 NA non-coding upstream 142427 25603998 ~ 25604238 (+)
G43081 NA non-coding upstream 145488 25600813 ~ 25601177 (+)
G43080 NA non-coding upstream 150724 25594697 ~ 25595941 (+)
G43138 NA non-coding downstream 31981 25807419 ~ 25844594 (+)
G43303 NA non-coding downstream 1009515 26784953 ~ 26785561 (+)
G43326 NA non-coding downstream 1097383 26872821 ~ 26930253 (+)
G43402 NA non-coding downstream 1234934 27010372 ~ 27010651 (+)
G43438 NA non-coding downstream 1494590 27270028 ~ 27417787 (+)
AMCG00013236 NA other upstream 224984 25513353 ~ 25521681 (+)
G42858 NA other upstream 976517 24768424 ~ 24770148 (+)
G42846 NA other upstream 997270 24747492 ~ 24749395 (+)
AMCG00013198 NA other upstream 1414811 24241269 ~ 24331854 (+)
AMCG00013147 NA other upstream 3485849 22248497 ~ 22260816 (+)
AMCG00013248 NA other downstream 17967 25793405 ~ 25798013 (+)
AMCG00013251 NA other downstream 377798 26153236 ~ 26161139 (+)
AMCG00013255 NA other downstream 479536 26254974 ~ 26258982 (+)
AMCG00013257 LOC106612075,LOC107560953 other downstream 592357 26367795 ~ 26396705 (+)
AMCG00013265 LOC107672452,LOC107711237,LOC107567237,LOC107670476 other downstream 652508 26427946 ~ 26478544 (+)

Expression


Co-expression Network