AMCG00013244 (LOC105892758)


Basic Information

Item Value
gene id AMCG00013244
gene name LOC105892758
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 25777912 ~ 25784972 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013244
GTGACAGAGCAGCATCATGGCAACCCTTATGGAGAGGCTGGCTTTCCTTCAGAAAGTTCCCACTCTGATGAAAGCCACCTCAGATGATGAGACGCCGTGCCCTGGATACCTCTTTGAAGAGATCGGAAAAATCTCCCATGAGTCTACTGGGTGCTGCCAGTGTCTCCTGGAGTACCTGCTGGAGCGGCTGCAGGCAGACTCCTGTCACGTCAAGCTGAAGGTCCTGAAGATCCTCCTGCACCTCTGCGGTCACAGCTCTCATCACTTCCTCACAGAACTGCGCCGCAATGCCACCTTTGTCCAGGAAGTGATCGTTTTCAGTGGGCCTCCTGATCCCGTCCATGGCAATGCGTTGTACCAGAGAGTGCGCACCACAGCGCAGGAGCTGGCCAGTGTGTTGTTTGCTGATACAGTGTCACCCCAGCCTGCTGTGTCCCCTTGCAAAGCTGCTTCTCCCAGTCTGGGAATGGGCTCGGACTCGGGGCTGAGGTCGGGGATGCAGGGATTTGGATACAGCCCTGGGAAACAAGTCTCGAATGGCACTCTGTTGGACAGGATCCAGAAGGCAGCAGAAGTCGTGGCCAGTGCTGTCCTGCCTCCTACGGAGCACCCTGGCATCCGTCTCCATGACAACAACTACCGGCCCGTGGTGGCGCCATGTGCGGTGGTGGAGGTGGCGGTGCCAGCGTGCGCCTACAGTCTGCCCGCCCAGAGTAACAGAGCAGCACAAAGATGTCCAGGCCAGGCCGGTGGGGGCTGGGAGGAGAGTGACAGTGGGCACAGCTCCCAGAACTCCTCTAATGAGAATGGCGACCTCTGCCGGGCCTCTGTGGGCGGCAGCAGCAAATCGGGGACGGACAGCCAATCGGGTGCCAGCCGTGAGAGTGGGGACCTGTCCGAACGGGTGGAGGTGTTGCATTTAGGAGACTGTGCCCAGGAAATGATCCTAATCAACAGCCTGACACAGGGGTCAAAGGTCTTCCTGACCAGAGAGGAAATGCAGCATTTTCTTAAAGAGTGTGCCATCCTGAACTGTGAGGTTGTGGTGGAGCTCCTCTGTCGAAAGCTGCAGGACCCCACGCAGTTTTCCCAGATGAGGGCCCTGTGTGCTGTGGCCTGTCTGATGTCATCCGACCTGCTGTCGCTGGACcacatatttggtgtgacccaGAAGCACTTGGTCCAGCTGAGTGAAGGCTCACCAGGGGCTGTAGCCAACAAGGCCACCAAGATACTGAGGCAGTTCGAAGCCCTGATGGGTGGACAGCAGGGGGCAGTGAGACGGGACGGCACTTTCTGCTCGGTGACTGCAGGTCCTTTGCCCCTGGACGAACCCTCGAAAGTGACAGGAGCCATCTTGCTGCCCACACCGAGGACGGGGACCTCCTTGAGCCTCGAAGGGAGTCACGATCCAGAGTCGGAGAGCTCATTTTCCAGTGGCCAAAACAACATCTCCTCTCCTCCTGGCTCAGAATGGGAGAGCCAGTGTCACCAGGCGGAAGTAGAGCACTGTGGGTCTGAACACCTGGATCAGTTTATGGACAGTGCCACCAAAGATCTGTCCAGCAGAGACTCGGAACAGCTGCAAATCAACAGTCCGTGTAGTGCAGACGCCTCTGTAGACCCCGAGCTGTCTGGCAAAGGAGCACAGGCAGGGGGCAGCGTTTCTCATCTGAATCCGGGATCTGAAACGCAAGAGGCTCCCGCCGGCTTCCCCACGGGCACGCTGTCTCTGTTCTCGGGCATGGAGCTCGTCACTGTGGGCAAGCCTGTGTGCTTCCCTTCACCACACACAGTACAGGACACTGATGCTGACAGGCCTGCTGACTCCGCAGACTCCTGCACCGAGCACAACGCCAGGACCTCGCCCACGCCCACGCCCGACTGTGGCTGTAGCCAGCAGCCCTCCGCCTTCTCCTTTATCAACATTTAAATGCCGAGAGGGGTGTTTCCGTGACtgtgataataatagtaataatatagtAAATCCACATATCAGTGGGATGATGTTCGGTTCATGTGATATGGGTTTTACATGCCATATGTTAGAGGAGAGTGGACTGAAATGTAAACAGCTCTGTCGCTCCAGGGAATGACATCAAGTGCGGCCGGGATTCTGAACAGAGGAGGAAGGATGTAGAACTGGCCTCTCATTGCCTGGCTTCACATTAGACATTGTGGCTCTCCTAAACTCTGGTATATTGCTGGATTACTCCAAGTtggctcctctctctcttattaAGAACTGTGTGCCAGATCATTGTGATACACTACAGGGATCCCCTTTGAGCTGCACCTGCTCTGCAATGtcttattaaaatgtgcatgtattattttctatttatttcataCTATGTTCTATCAATGATTATTTCAAGATACAACACTCAAGGTCACTACCAAAGCAGTCTTCGTATTTCATTCCACCTCGATCTTTGTTAGGAGACATTTGTAAAATCCATGCGATACTGAATAAGGGCAACCATTCTCCAACAGTTGTACTGTGGTTACCACATCTGTTCAGAGCTGCTTGTGTTTGTTACAAAGCTACATTTTGTTTCCTATGTTCATctattgaaaaaagaaaagaaactgtTTGTATccatatttgtttgcatttatttattatcacaggtgaaggttttattttgatgttagGTAGCCAGGGTCACCTTAGTGCTGCCGTTGGTTTCTGGGTGGAGG

Function

NR:

description
PREDICTED: AP-4 complex accessory subunit tepsin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013244 True 2703 mRNA 0.53 13 25777912 25784972

Neighbor

gene id symbol gene type direction distance location
AMCG00013243 slc38a10,LOC107749860 coding upstream 2474 25746665 ~ 25775438 (+)
AMCG00013237 NA coding upstream 223118 25551595 ~ 25554794 (+)
AMCG00013232 NA coding upstream 292292 25479858 ~ 25485620 (+)
AMCG00013234 socs3 coding upstream 353928 25421661 ~ 25423984 (+)
AMCG00013229 NA coding upstream 393440 25375516 ~ 25384472 (+)
AMCG00013252 ttyh2,LOC106589617,LOC106610147 coding downstream 475068 26260040 ~ 26312137 (+)
AMCG00013254 dnai2,LOC106610195 coding downstream 529314 26314286 ~ 26318743 (+)
AMCG00013253 kif19,LOC107560952 coding downstream 536794 26321766 ~ 26363091 (+)
AMCG00013256 chmp6,LOC108429718,LOC107690936,LOC106589902 coding downstream 613706 26398678 ~ 26404568 (+)
AMCG00013266 NA coding downstream 731332 26516304 ~ 26524306 (+)
G43085 NA non-coding upstream 156673 25620937 ~ 25621239 (+)
G43084 NA non-coding upstream 157907 25619610 ~ 25620005 (+)
G43082 NA non-coding upstream 173674 25603998 ~ 25604238 (+)
G43081 NA non-coding upstream 176735 25600813 ~ 25601177 (+)
G43080 NA non-coding upstream 181971 25594697 ~ 25595941 (+)
G43138 NA non-coding downstream 22447 25807419 ~ 25844594 (+)
G43303 NA non-coding downstream 999981 26784953 ~ 26785561 (+)
G43326 NA non-coding downstream 1087849 26872821 ~ 26930253 (+)
G43402 NA non-coding downstream 1225400 27010372 ~ 27010651 (+)
G43438 NA non-coding downstream 1485056 27270028 ~ 27417787 (+)
AMCG00013236 NA other upstream 256231 25513353 ~ 25521681 (+)
G42858 NA other upstream 1007764 24768424 ~ 24770148 (+)
G42846 NA other upstream 1028517 24747492 ~ 24749395 (+)
AMCG00013198 NA other upstream 1446058 24241269 ~ 24331854 (+)
AMCG00013147 NA other upstream 3517096 22248497 ~ 22260816 (+)
AMCG00013248 NA other downstream 8433 25793405 ~ 25798013 (+)
AMCG00013251 NA other downstream 368264 26153236 ~ 26161139 (+)
AMCG00013255 NA other downstream 470002 26254974 ~ 26258982 (+)
AMCG00013257 LOC106612075,LOC107560953 other downstream 582823 26367795 ~ 26396705 (+)
AMCG00013265 LOC107672452,LOC107711237,LOC107567237,LOC107670476 other downstream 642974 26427946 ~ 26478544 (+)

Expression


Co-expression Network