AMCG00013245


Basic Information

Item Value
gene id AMCG00013245
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 25776374 ~ 25777723 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013245
TTAGGAAAGTATGACAGATACGTAATGAGTGTCAACAGCGCTATTTAAATTGTACAGCGAACATGTCAACCGTGTGTTATTCCATTCAATAGTACCACACCCTCTTACTCATTGATTAAGCCTCCCTCTTGTTGCTCCTGTAAGCACGTCGTTGTAACCCACTCTAGTTATTATCAGATCAGACCGGGATGTCGGGTAGTAACGTTTGGGCTCGTAGCCGGGACAGGTTGAGAAGGTTCCCGGAACTTCTAACCCAGTGCGGGGCGGAGGCAGCTGCTTATGGGAAGTGCGTGtctgccaccaccaccactggGACGCAAGAGCTGAGGAAGGGCCTCTGCGCCCGGGAGTTCGAGGCGCTGAAGAGGTGCTTCGTGTCTGCAGCCAAGAAGAGtgtgaaataaatcacagcGATCTCTGACTGCAATGAGAAGAGATGCAAAGGAAGACCTGGGTTTCCCTGAACTGGAATCCATGTGAATTTGCAACCACATCCAGACCAAAGACACTGGAAATGGTCTCTACTTGAATGCCCACATTGTACACCCCGGGATTTGCTTCGGTTTGATAATGTATAGAGTAGTGCATGTGAATAAATACAGCTCATTTTGTaaaaa
>TU53777
CGGGGTCAACAGCATGGCGGCGTGCTTAGGACTTAGGAAAGTATGACAGATACGTAATGAGTGTCAACAGCGCTATTTAAATTGTACAGCGAACATGTCAACCGTGTGTTATTCCATTCAATAGTACCACACCCTCTTACTCATTGATTAAGCCTCCCTCTTGTTGCTCCTGTAAGCACGTCGTTGTAACCCACTCTAGTTATTATCAGATCAGACCGGGATGTCGGGTAGTAACGTTTGGGCTCGTAGCCGGGACAGGTTGAGAAGGTTCCCGGAACTTCTAACCCAGTGCGGGGCGGAGGCAGCTGCTTATGGGAAGTGCGTGtctgccaccaccaccactggGACGCAAGAGCTGAGGAAGGGCCTCTGCGCCCGGGAGTTCGAGGCGCTGAAGAGGTGCTTCGTGTCTGCAGCCAAGAAGAGtgtgaaataaatcacagcGATCTCTGACTGCAATGAGAAGAGATGCAAAGGAAGACCTGGGTTTCCCTGAACTGGAATCCATGTGAATTTGCAACCACATCCAGACCAAAGACACTGGAAATGGTCTCTACTTGAATGCCCACATTGTACACCCCGGGATTTGCTTCGGTTTGATAATGTATAGAGTAGTGCATGTGAATAAATACAGCTCATTTTGTaaaaaggctttttttattatttgtaaggATT
>TU53779
GCAGCATTGGCCAATTGGAAGAGACCAGGAAGAGGGCTTGATTTCGGGGTCAACAGCATGGCGGCGTGCTTAGGACTTAGGAAAGTATGACAGATACGTAATGAGTGTCAACAGCGCTATTTAAATTGTACAGCGAACATGTCAACCGTGTGTTATTCCATTCAATAGTACCACACCCTCTTACTCATTGATTAAGCCTCCCTCTTGTTGCTCCTGTAAGCACGTCGTTGTAACCCACTCTAGTTATTATCAGATCAGACCGGGATGTCGGGTAGTAACGTTTGGGCTCGTAGCCGGGACAGGTTGAGAAGGTTCCCGGAACTTCTAACCCAGTGCGGGGCGGAGGCAGCTGCTTATGGGAAGTGCGTGtctgccaccaccaccactggGACGCAAGAGCTGAGGAAGGGCCTCTGCGCCCGGGAGTTCGAGGCGCTGAAGAGGTGCTTCGTGTCTGCAGCCAAGAAGAGtgtgaaataaatcacagcGATCTCTGACTGCAATGAGAAGAGATGCAAAGGAAGACCTGGGTTTCCCTGAACTGGAATCCATGTGAATTTGCAACCACATCCAGACCAAAGACACTGGAAATGGTCTCTACTTGAATGCCCACATTGTACACCCCGGGATTTGCTTCGGTTTGATAATGTATAGAGTAGTGCATGTGAATAAATACAGCTCATTTTGTaaaaaggctttttttattatttgtaaggATT

Function

GO:

id name namespace
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005739 mitochondrion cellular_component

KEGG:

id description
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03040 Spliceosome
ko03013 Nucleocytoplasmic transport
ko03018 RNA degradation

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013245 False 617 mRNA 0.48 3 25776400 25777647
TU53777 False 675 lncRNA 0.48 3 25776374 25777679
TU53779 True 719 lncRNA 0.48 3 25776374 25777723

Neighbor

gene id symbol gene type direction distance location
AMCG00013242 NA coding downstream 90649 25685469 ~ 25685725 (-)
AMCG00013239 NA coding downstream 238899 25526642 ~ 25537475 (-)
AMCG00013238 NA coding downstream 263503 25508197 ~ 25512871 (-)
AMCG00013240 NA coding downstream 271858 25493377 ~ 25504516 (-)
AMCG00013233 NA coding downstream 357796 25385739 ~ 25418578 (-)
AMCG00013247 NA coding upstream 19497 25797220 ~ 25803654 (-)
AMCG00013249 NA coding upstream 33995 25811718 ~ 25812734 (-)
AMCG00013250 sdk2,sdk2b coding upstream 61745 25839468 ~ 25910122 (-)
AMCG00013259 NA coding upstream 707710 26485433 ~ 26492758 (-)
AMCG00013263 NA coding upstream 718213 26495936 ~ 26500765 (-)
G43100 NA non-coding downstream 188113 25587914 ~ 25588261 (-)
G43072 NA non-coding downstream 256381 25518811 ~ 25519993 (-)
G43042 NA non-coding downstream 352300 25366266 ~ 25424074 (-)
G43044 NA non-coding downstream 407311 25367598 ~ 25369063 (-)
G43040 NA non-coding downstream 424636 25289470 ~ 25351738 (-)
G43165 NA non-coding upstream 341974 26119697 ~ 26119919 (-)
G43171 NA non-coding upstream 370693 26148416 ~ 26148633 (-)
G43184 NA non-coding upstream 477273 26254996 ~ 26257823 (-)
G43194 NA non-coding upstream 531630 26309353 ~ 26312144 (-)
G43204 NA non-coding upstream 589256 26366979 ~ 26367220 (-)
AMCG00013241 NA other downstream 148122 25588487 ~ 25628252 (-)
G43070 NA other downstream 259411 25516080 ~ 25516963 (-)
AMCG00013223 tk1,kith,LOC102792372 other downstream 609601 25162157 ~ 25166773 (-)
G43001 NA other downstream 698130 25075393 ~ 25078244 (-)
AMCG00013216 NA other downstream 747370 25025738 ~ 25029004 (-)
AMCG00013246 NA other upstream 8420 25786143 ~ 25791759 (-)
AMCG00013258 NA other upstream 701888 26479611 ~ 26484414 (-)
AMCG00013264 NA other upstream 775826 26553549 ~ 26557324 (-)
AMCG00013295 NA other upstream 1495506 27273229 ~ 27293073 (-)
G43473 NA other upstream 1791041 27568764 ~ 27569151 (-)

Expression


Co-expression Network