AMCG00013246


Basic Information

Item Value
gene id AMCG00013246
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 25786143 ~ 25791759 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013246
ATGTTATCAGAAAACAGGAAACGGCGGCGGAACTGTGACCATGACGACAGCCAGCTCCTGCCCCAGGCCAAACGCGGGGGAGCGGGTCAGTCCCTGATCCCTGACCTCGGCCGGGACACCTGGGACTCTGAGTCGTCGAGCAGCGACAGCAGTGCGATCAGCAGTCCGGAGCGAGCGGCGGGGAGCGGAGGCAGCAGCCAGTCTGCGGAAAGCGCAGGGGGCCGGTCCAACGTGGGCGCCTGCAGCCCGGCCAGCGCGGCACACTTTAGCGAGGACTCGGCGTTGGAGGACTCCTACCACCGCATCAACCGCATCCTGAGAGAGGCCCACTTCCACAGCCTGCAGAGCCGCGGGCAGCCGGGTGCCACGTGA
>TU53786
ACCTGAACTCATGCCTTTTCTCTTTGGCTGCTCGCTAGATTAACCAATCAGAAGACGCTATGAAAATGATACCAATCTGGATTGGCGGAACCAGTGACATCATAATTTCTAACTACTTCCAAAAACATCAAAAGTAACGGCCTGGGGGGCTCTATAATAAATACTTCATTGAATAACAGCAGAATAGCATAATGTTTTACAAACGTTTTAGCAAATAACACTATGGCAATCGATTTACTTAGCAGAAAATATCCAACTGCAACGTTTGCTACATATAACACTTGAAACCCACGCTCTTACAGAAACTCCGCATCCAAAGCCCCTTAACTCAGTGGAAATAGGTAGCCTTGAGAACCGCCTGTCTTTCGCAGCCTGTATTCCTGCTCATTGTGGCTCCGAAAACATTGCTTCAGTAACGCTTGTATTcaaatagtatttaaaatatatatattttgtaattttgtatttaaaaaaatatatattcttagaGCGTCCTCGTCCATAGCTAGGATTTAGGCGTCTTTCTCTCGCCTGTGCTGTTCGCGATGGCGTGCCCTCCCTTACTGCGCAGGCGCGATGTCATGTAAACAGCAGCAGCTGGGAGCAGTAGATAGAGGCACTGAGCGAGAGACGGCAGAGATCAGGGTGGGGAAACCGGCACAGACCCCACGAAACGCGTCGTGTCGACACCGAGGACGGCGGCTTTCTTTACAAAATGCTTTAGCGTTACCTTATCCTGCTGCCATATCGACGGATTCAAGTAGATACCGCGGGGGGGGGAGATATAACATTAAGCCGGGGGCGAGAGAGCGGTGCATTCGGGGGATCGGGCTGTACGGTGGCCGGTTGTGGTGGCATCGCGGAGAGGTTTGGGGGCGACAGCCGTGGGCATTGAGCAGGAGAggaagtgtttgtttgtttgtttgtttgtttgttttcagttgcgATTAATATATCTGCGGTTTAGTTTGTCTACAATCTCGACAATCCGAGCCGTGTTCGTGTTGGCGGCCCTTAGTCGTTGCCTCTCGCTTTCGAAAGCAGCCGATAGAGAGAGAAACCCGGCACGGTGGTGCTGTGTGGGGGTCTTTTATTAAGCAAGTCACTTTTATATTGACGCCAGATCATATTCCCATTAGATCTGACGTCTCGTAAGGACAGATCCGGAGACACGGTGCTGGATATTTGTGGCCTGCTCCTCTTGACCAGCTCTCTAGGCCGGTACACTGTTAGTGTTAGTGGGGGGGTGCAGATCTCTCACACCAAATTATAAAAGCATATTAGAGCCATTGACTTCACTACAGACTCGTAGCTACATGTAAGGGATGTGTGGATGCAGAGTGAAGTCGGTGACATGTTCTGACCGAAGATAAACCCCCAGACCAGCCCGGCACCGAGCGAGAGAGCTGCGGAGGAAGCGATTCATTATACACTTGGAAACCTTGCTTTTTCAGATGTTATCAGAAAACAGGAAACGGCGGCGGAACTGTGACCATGACGACAGCCAGCTCCTGCCCCAGGCCAAACGCGGGGGAGCGGGTCAGTCCCTGATCCCTGACCTCGGCCGGGACACCTGGGACTCTGAGTCGTCGAGCAGCGACAGCAGTGCGATCAGCAGTCCGGAGCGAGCGGCGGGGAGCGGAGGCAGCAGCCAGTCTGCGGAAAGCGCAGGGGGCCGGTCCAACGTGGGCGCCTGCAGCCCGGCCAGCGCGGCACACTTTAGCGAGGACTCGGCGTTGGAGGACTCCTACCACCGCATCAACCGCATCCTGAGAGAGGCCCACTTCCACAGCCTGCAGAGCCGCGGGCAGCCGGGTGCCACGTGACTGCCGCCCCCCCCCCGCACACACTTTCCCccgagagaggagaggagaggagaggagaggactgCGCCAGGGCCCCCGGAAGAGCGTCCCCTGCCCTCCTCACCCCACTGCCAGGGAGGGAGGCCTGGTCACGGGGCATCCGGCCTTTGCACAACTTCCTTACCTGTTGTCGTCAATGACTTTGCTTTCTCATGTttcaacatttaacaaaaaaaaaaaaaaagaaaaaatcatccATGGGTTGGTTGTGGTTTTGTGGCCCGTATGTTGACACGGATGCTTTTTCAGAAGATTCTAAGCGTTggttgcaataataataattaaacatgtttcctCCTGGTTTCTATTTAGGCCAGGGCAGTTTACATGCTCTTTGCAAAGCCTAGcgtgctatttttttttcttcttctagtTTGAGTACTTGCTGTTAATAGAAAAGAAGTGAAAGGAAAAGCAGACTTTCACTGCTGTCCTGTTCTCGTTTTGAATGACAAAGAAACCGAAATCCCTGTAGCTAAGGCTAAactgaggggggaaaaaaaactattctggACCTTACATTCCTCTTTTCAGTTGTAAATGGCATGCTTCGCTACTGCTGTGGTGACTAGTCAGAAATTGGATGTCGGTaggaagtgtttatttaatggtttattaCCAAAGCTGGACCCTTAGCCTATTATTCGGACTGTGGTTGGCAGCTGTAAAAGAACAGGGTCtcttattttaatacagaagAGTCAGGCCAATGTTTACCGTGGCATATTTCCGGAAACTTAGCGGTCTATTAATATACTTTGAGAGCGTTTTCTGTgttaaagacaaattaaatctACAAGAAAAACTGGTTTGGCACTTGCCAACTGACTTGAAAAATCAACACGTCTCTTCTCACTTTACCAGGGTGTCCCTTTTATCCCTGTCACAGAATCAATAGTGAACTCTTAAGATGCTTGTGTTGGGTACATATTTCTCGGTGACTTATGGGCAGTGCTGTCAGGTGAAACAACTGCTTTGTTCTTACCTTGGCAGCCTTGTGGTGACCAGCACAAATCGAGTCTGTGATCACTACGCTCACCGTGGCACATCGGCTCatgtaaatgtttagttttttttactccatgtattgcactttaacttACGCTGGAGAATCTCAATTGTCAGCCGAAGCAATAAATCGATGGAGATATTGATTCAGAGTTCATTAAGAGCTGCGCAACCTCCCCGTTTTGAAAAGCTCTCTGGAGGTCTACGATAAAATATAtaggactttttatttttcacgtGAGTAGCAGGGACACTGAAACTGCCAGCTCGGTCATCGAGGACGGGTATCTTAAAGGGACCGGTCAGAGTGTAGGCACTTAAATTAGCGTCCCTCTAAATATAGCCTCCACTATTAGCAGTACCTACTGGTTCACATGCCAGGGTTGGATGacaaaattcaaatgaaaacagatgtaGGGGTTTAACCTTTTCTGGTCTGGTTAGTTTTAGCTAGGAAGTTAGTGTCTGGGTTAATATTGAGGATTGTGTCGTACACTGTGATTCAGTGCAGGATTCTCAGTTTGTCCGGGAAGTGGATTCCTGCTTAAGTGAGTCTCACCAGGTCAATCTGTAATTGCCTGTCCTGGAGAGAGCTTTACAATAAAGTCTTCTCTAACAATAGAATATATATCTACTGTAACGGGCACAACTGGCTGCAGCAATGTACATTACGATGTACATGCAAACAGTTTTTGGTTAAGAGGCCAGTTTTAAAAGCCTGCATTGTCAGTGTGCCAGGAGTGTAGTGCGGCACGTGCCGGCCGTCTGGCCCGTCTCCGTGGTTAAAAAATAACCCGTGACGTTGTGACCCAGCTGCAGTGGAATCCCAACTAGAGTTAAATAGAGAGAGGGTggattaatacataataaattcaagttatgaatgtttttttaggGGCTGAGGTGATGAGGGCTGAATTTGAACAGTCCCTAACTGTCTGGGATTTCAGTTCCCAAGCCCTCACTGTTAACGAGTGCCAGTGTCCCTCGATTCCCATCTGTAGGTGCTGCCATGAGAAGCGTGTTGAGACAGGTCCCCTTCTGAAAAGTGTTCTGCAATCCTGCCCAGACCTTTTGTTCTTAATATTGCAAAGatcaaaaaacaacacttgattgttttgtatttagaaTTGTACATTACCTATTAGCATAaatttgagttgtttttttttttaaatccaccacttacatttgaaataaaacttGATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013246 False 372 mRNA 0.67 3 25788399 25790305
TU53786 True 4082 lncRNA 0.47 3 25786143 25791759

Neighbor

gene id symbol gene type direction distance location
AMCG00013242 NA coding downstream 100418 25685469 ~ 25685725 (-)
AMCG00013239 NA coding downstream 248668 25526642 ~ 25537475 (-)
AMCG00013238 NA coding downstream 273272 25508197 ~ 25512871 (-)
AMCG00013240 NA coding downstream 281627 25493377 ~ 25504516 (-)
AMCG00013233 NA coding downstream 367565 25385739 ~ 25418578 (-)
AMCG00013247 NA coding upstream 5461 25797220 ~ 25803654 (-)
AMCG00013249 NA coding upstream 19959 25811718 ~ 25812734 (-)
AMCG00013250 sdk2,sdk2b coding upstream 47709 25839468 ~ 25910122 (-)
AMCG00013259 NA coding upstream 693674 26485433 ~ 26492758 (-)
AMCG00013263 NA coding upstream 704177 26495936 ~ 26500765 (-)
G43100 NA non-coding downstream 197882 25587914 ~ 25588261 (-)
G43072 NA non-coding downstream 266150 25518811 ~ 25519993 (-)
G43042 NA non-coding downstream 362069 25366266 ~ 25424074 (-)
G43044 NA non-coding downstream 417080 25367598 ~ 25369063 (-)
G43040 NA non-coding downstream 434405 25289470 ~ 25351738 (-)
G43165 NA non-coding upstream 327938 26119697 ~ 26119919 (-)
G43171 NA non-coding upstream 356657 26148416 ~ 26148633 (-)
G43184 NA non-coding upstream 463237 26254996 ~ 26257823 (-)
G43194 NA non-coding upstream 517594 26309353 ~ 26312144 (-)
G43204 NA non-coding upstream 575220 26366979 ~ 26367220 (-)
AMCG00013245 NA other downstream 8420 25776374 ~ 25777723 (-)
AMCG00013241 NA other downstream 157891 25588487 ~ 25628252 (-)
G43070 NA other downstream 269180 25516080 ~ 25516963 (-)
AMCG00013223 tk1,kith,LOC102792372 other downstream 619370 25162157 ~ 25166773 (-)
G43001 NA other downstream 707899 25075393 ~ 25078244 (-)
AMCG00013258 NA other upstream 687852 26479611 ~ 26484414 (-)
AMCG00013264 NA other upstream 761790 26553549 ~ 26557324 (-)
AMCG00013295 NA other upstream 1481470 27273229 ~ 27293073 (-)
G43473 NA other upstream 1777005 27568764 ~ 27569151 (-)
G43594 NA other upstream 2276454 28068213 ~ 28072787 (-)

Expression


Co-expression Network