AMCG00013247


Basic Information

Item Value
gene id AMCG00013247
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 25797220 ~ 25803654 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013247
ATGCAAGAGCTCATCGCCGGCGTGGAGAGCCTCCATTTCCACCTGGAAGCGGATGTTTTCTACCAGAAAGGTGCCCATTTCCTCCCCTTCCCTGGAATGGACAGCTCGATGTGCCCCTTCCGCCACCTGCGGGGAGAGAAGTCCATCGTGTGCAAGCACTGGCTGCGAGGGCTGTGCAAGAAGGGCGACCAGTGCGAGTTCCTGCACGAGTACGACATGACCAGGATGCCCGAGTGCTACTTCTACTCCAAATTCAACGAGTGCAGCAACAAGGAGTGTGCCTTCCTTCACATCGACCCCTCCAGCCGGGTGCGGGACTGCCCCTGGTACGACCGAGGCTTCTGCAAACACGGGCCAATGTGCAAGCATCGACACACCAGGAGAGTCATGTGCCCCAATTACTTAGTGGGGTTCTGCCCTGAGGGAGGTCACTGCAAGTTTGTCCACCCCAAAGCTGACATTCCAAACTGTCCTACCGAGCAGCCAAAGcagcCGCAGCCTGCCTTCGTAGTGAAAGTGGAGCCCCTGGTTCACCCGCAGAAGATCTTCCTGCACGAAGTCCCAGCATTCCCTTCTCTGTCCACCATGGAGATCGTCCACTACCAGCTCACCCGGCTGCAGGAGGCCGCCACCTCAACGCGCAATTCGGCCAGGCCCATCCACCTCATCACCTGCTACAAGTGCGGGCAGAAGGGCCATTATGCGAATAAGTGCAGGAGGGGACACCTGGGCCTGCTGTTCGGCCACTGAGCCCGCTGCGTGGCCGGGCCTGGTGGATGACATCACGAGTGCCTTTGGACACCGTTTTAGTCAAAACACTGTAGAACTCACTTTACACTAGTAACATACAGCAGTTTTCCTTTTTGCCTTGAAATGATCCAACATCCAGTTACAGAATTGACAGCTCTCTGTTGACATGGCACTTGCGTCCTCCTCCTTCAAAGCTGCTCAATAGCTCCATCTTTAAGATGGGCTTTAGCCGAATTGACATTAACTTGTCAAGATGCCTTTTTTCTTGTTACGCTTTCGAAGGACTGgagttctgctttttttttttttcctctttaggTTTTGGTCATCTTAGCGATGTGTAGTAACAATCGTTTTTCACACGTGTTGCACATCTGGCCTCATTCATAAAGGGGAGCTCTTCTTTGTCATTGTATTTTGGTTCAAGTGTTCAGTTCATCTTCCCTCATTGGGGATCACTTTGACAGGTTAGTAGTGACCAAACTGAAAAATCAAACAAGTCCTCGTTCATTCACAACCACTTTGGACAATGTATGAAAACATGCTTAGTTGTAATCTACCTCGGAGGAATCTTCACATTATGTGCCAAGGGgaaaacatttacatgtttGTGCTGTAACAAGAGAtcac

Function

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG:

id description
K14404 CPSF4, YTH1; cleavage and polyadenylation specificity factor subunit 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013247 True 1380 mRNA 0.51 7 25797220 25803654

Neighbor

gene id symbol gene type direction distance location
AMCG00013242 NA coding downstream 111495 25685469 ~ 25685725 (-)
AMCG00013239 NA coding downstream 259745 25526642 ~ 25537475 (-)
AMCG00013238 NA coding downstream 284349 25508197 ~ 25512871 (-)
AMCG00013240 NA coding downstream 292704 25493377 ~ 25504516 (-)
AMCG00013233 NA coding downstream 378642 25385739 ~ 25418578 (-)
AMCG00013249 NA coding upstream 8064 25811718 ~ 25812734 (-)
AMCG00013250 sdk2,sdk2b coding upstream 35814 25839468 ~ 25910122 (-)
AMCG00013259 NA coding upstream 681779 26485433 ~ 26492758 (-)
AMCG00013263 NA coding upstream 692282 26495936 ~ 26500765 (-)
AMCG00013262 ush1g,LOC107556601,LOC107698769,LOC107664446,LOC107568596 coding upstream 697542 26501196 ~ 26512078 (-)
G43100 NA non-coding downstream 208959 25587914 ~ 25588261 (-)
G43072 NA non-coding downstream 277227 25518811 ~ 25519993 (-)
G43042 NA non-coding downstream 373146 25366266 ~ 25424074 (-)
G43044 NA non-coding downstream 428157 25367598 ~ 25369063 (-)
G43040 NA non-coding downstream 445482 25289470 ~ 25351738 (-)
G43165 NA non-coding upstream 316043 26119697 ~ 26119919 (-)
G43171 NA non-coding upstream 344762 26148416 ~ 26148633 (-)
G43184 NA non-coding upstream 451342 26254996 ~ 26257823 (-)
G43194 NA non-coding upstream 505699 26309353 ~ 26312144 (-)
G43204 NA non-coding upstream 563325 26366979 ~ 26367220 (-)
AMCG00013246 NA other downstream 5461 25786143 ~ 25791759 (-)
AMCG00013245 NA other downstream 19497 25776374 ~ 25777723 (-)
AMCG00013241 NA other downstream 168968 25588487 ~ 25628252 (-)
G43070 NA other downstream 280257 25516080 ~ 25516963 (-)
AMCG00013223 tk1,kith,LOC102792372 other downstream 630447 25162157 ~ 25166773 (-)
AMCG00013258 NA other upstream 675957 26479611 ~ 26484414 (-)
AMCG00013264 NA other upstream 749895 26553549 ~ 26557324 (-)
AMCG00013295 NA other upstream 1469575 27273229 ~ 27293073 (-)
G43473 NA other upstream 1765110 27568764 ~ 27569151 (-)
G43594 NA other upstream 2264559 28068213 ~ 28072787 (-)

Expression


Co-expression Network