AMCG00013248


Basic Information

Item Value
gene id AMCG00013248
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 25793405 ~ 25798013 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013248
ATGGGCTCCCAAGGTGTGCTGCAGCTCGCACCTCCAGCAGCACCGACATTGACGCCTCGCCTGCTGCAAACAGCCGTAGGGTCCAACTGTGAGTCGTGTTGCAAAGTAGCAGCTCCCAGAGGCTTGGAGTGGTGTCCAGAGTTGGCCTTGGGGTACCGCGGGATCAGGTTCTCAATGCTCCCCCTGCAGCCCCTGACCTACTGTGTGCAGAGCACAGGAAGACAGCCCCCCGCAGGTCTGAGTCGAGGCTGGCAGCGATACTACAGCAGGTACATCGATGTGAGGAGAGGTGGAGTTGGGGGAGTGACCATGCTGCTGGCTGGATACTGCATTCTGTGCTACAGCTGGAACTACCCGCACCTCATCCCTGTGAACTGTGGCACATATGGAATGACGTGA
>TU53754
GTCTGTGTACAGCGGAGGTGCTGTGTGTCTGACCTTGAGTGGCACTGTTCCTGTAGGCTGGCAGCGATACTACAGCAGGTACATCGATGTGAGGAGAGGTGGAGTTGGGGGAGTGACCATGCTGCTGGCTGGATACTGCATTCTGTGCTACAGCTGGAACTACCCGCACCTCAAAAACCAGCGCTGGAGGAAGTACCATTGATGTCCCAGGGCCACACATCCCCCTGGAATCCCAGTTCCTGTTCCACAAGAGACCCTGTCCTGCTGGAACTCTCTGCTCCAGTTTAAGCCCAGCTCGAGGCTGCGGCAGCCCTGGGGTTTGGAGTCACCACTAAATAAGTAACATATTGCGACCAAAAAGAAGAGCAAtcactgccattttaaaaatacagcccAAGCCACACAACTTCTCTAAAAGGTTCATTGTTACTGTCCATTGAAATAGTGCTgtgtaaatgcaaatgtaattatattagttATGAGATGCTAATTGCAATCAAGAGTGTAACACTCATATCAGTACCTGACAAAACAAAGCCTGGAAAGAAACCATGTGGAgaaaaggaaaggttttcttCAAGGTGTTTTCATTGTATAGTCCCTGTGAACTGTGGCACATATGGAATGACGTGAGTTGCTCTTACAATTTGTGGCAGTTAGTCACCTGTTTAGCCGTGACTTCAAGCGACAGGAATGTGCCGCAGCGGCGCCGGCATTCCACCATGGAACCAAGACAGCACggctacacacacaaactgaaactACAGTAGCGACTGTTCTGGGTTTACAGACAACTGTGCTTCCTATAGAGCCTTAGCCCTTAGGGACAGGCTGTACGCTTCATACGCGATGTAATCCTACCTATGTAGAGCCCTGCCCTATTAGTTTACACACTTTACTATTTAGTGGAGGGTAGGGACAAGCTTCCCTTATTTAGGTTTTATTAGCTTTGTaatgaatttcatttttaagatatcttctccagaaaaatatatattctgctaATATTTTCTGAACATCTTTCTATTTATGTAAAACCTGACCTTTGTCATCTGCCAGaggttatatttattatataaacattgtCTTGGTTTATTTAACCTGCTCCTGTTTAGATCTGTGTGCATTTTCTTGAGTGATCCTGAGTGAATGTAGTGTAGTTCACAGAAATCCCACCAGAGGGCATCCTAACCCCAGGCATCATGCAGTCAAATCAACAGAAATGAAACTTTACATGTCAAGAAACACAGCGAGGAACATGGTTTGCAAAACTTTATTtagaataaacatttaaaaatatatatatatatatatatatatatataagtgtgtgaTCTCTTGTTACAGCACaaacatgtaaatgttttcCCCTTGGCACATAATGTGAAGATTCCTCCGAGGTAGATTACAACTAAGCATGTTTTCATACATTGTCCAAAGTGGTTGTGAATGAACGAGGACTTGTTTGATTTTTCAGTTTGGTCACTACTAACCTGTCAAAGTGATCCCCAATGAGGGAAGATGAACTGAACACTTGAACCAAAATACAATGACAAAGAAGAGCTCCCCTTTATGAATGAGGCCAGATGTGCAACACGTGTGAAAAACGATTGTTACTACACATCGCTAAGATGACCAAAAcctaaagaggaaaaaaaaaaaaagcagaactcCAGTCCTTCGAAAGCGTAACAAGAAAAAAGGCATCTTGACAAGTTAATGTCAATTCGGCTAAAGCCCATCTTAAAGATGGAGCTATTGAGCAGCTTTGAAGGAGGAGGACGCAAGTGCCATGTCAACAGAGAGCTGTCAATTCTGTAACTGGATGTTGGATCATTTCAAGGCAAAAAGGAAAACTGCTGTATGTTACTAGTGTAAAGTGAGTTCTACAGTGTTTTGACTAAAACGGTGTCCAAAGGCACTCGTGATGTCATCCACCAGGCCCGGCCACGCAGCGGGCTCAGTGGCCGAACAGCAGGCCCAGGTGTCCCCTCCTGCACTTATTCGCATAATGGCCCTTCTGCCCGCACTGCAAGGAGACAGAAGAGGCATCAAGTCTAATAGCCGAATGCTCACACGTTCCGTTTTTAATCTCATCACAGATAATGAATAGTGATAAGCACA

Function

GO:

id name namespace
GO:0006259 DNA metabolic process biological_process

KEGG:

id description
ko04110 Cell cycle
ko04114 Oocyte meiosis

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013248 False 399 mRNA 0.59 3 25793405 25796522
TU53754 True 2124 lncRNA 0.43 2 25795716 25798013

Neighbor

gene id symbol gene type direction distance location
AMCG00013244 LOC105892758 coding upstream 8433 25777912 ~ 25784972 (+)
AMCG00013243 slc38a10,LOC107749860 coding upstream 17967 25746665 ~ 25775438 (+)
AMCG00013237 NA coding upstream 238611 25551595 ~ 25554794 (+)
AMCG00013232 NA coding upstream 307785 25479858 ~ 25485620 (+)
AMCG00013234 socs3 coding upstream 369421 25421661 ~ 25423984 (+)
AMCG00013252 ttyh2,LOC106589617,LOC106610147 coding downstream 462027 26260040 ~ 26312137 (+)
AMCG00013254 dnai2,LOC106610195 coding downstream 516273 26314286 ~ 26318743 (+)
AMCG00013253 kif19,LOC107560952 coding downstream 523753 26321766 ~ 26363091 (+)
AMCG00013256 chmp6,LOC108429718,LOC107690936,LOC106589902 coding downstream 600665 26398678 ~ 26404568 (+)
AMCG00013266 NA coding downstream 718291 26516304 ~ 26524306 (+)
G43085 NA non-coding upstream 172166 25620937 ~ 25621239 (+)
G43084 NA non-coding upstream 173400 25619610 ~ 25620005 (+)
G43082 NA non-coding upstream 189167 25603998 ~ 25604238 (+)
G43081 NA non-coding upstream 192228 25600813 ~ 25601177 (+)
G43080 NA non-coding upstream 197464 25594697 ~ 25595941 (+)
G43138 NA non-coding downstream 9406 25807419 ~ 25844594 (+)
G43303 NA non-coding downstream 986940 26784953 ~ 26785561 (+)
G43326 NA non-coding downstream 1074808 26872821 ~ 26930253 (+)
G43402 NA non-coding downstream 1212359 27010372 ~ 27010651 (+)
G43438 NA non-coding downstream 1472015 27270028 ~ 27417787 (+)
AMCG00013236 NA other upstream 271724 25513353 ~ 25521681 (+)
G42858 NA other upstream 1023257 24768424 ~ 24770148 (+)
G42846 NA other upstream 1044010 24747492 ~ 24749395 (+)
AMCG00013198 NA other upstream 1461551 24241269 ~ 24331854 (+)
AMCG00013147 NA other upstream 3532589 22248497 ~ 22260816 (+)
AMCG00013251 NA other downstream 355223 26153236 ~ 26161139 (+)
AMCG00013255 NA other downstream 456961 26254974 ~ 26258982 (+)
AMCG00013257 LOC106612075,LOC107560953 other downstream 569782 26367795 ~ 26396705 (+)
AMCG00013265 LOC107672452,LOC107711237,LOC107567237,LOC107670476 other downstream 629933 26427946 ~ 26478544 (+)
G43263 NA other downstream 726813 26524826 ~ 26540049 (+)

Expression


Co-expression Network