AMCG00013251


Basic Information

Item Value
gene id AMCG00013251
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 26153236 ~ 26161139 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013251
AGAGTGCACGCTCAGATGTCGGCTCAATGCTGTTCTGCTCCAGTTTCAGCAGCTAGTATCCAGAAAACCTATCCAAGGCCATATGAAACTAATGCAGGGGCCCTATTCTCAAACCACTCCTCCCAGAGAGGATGGGCTTCTGACTTTGACTCTTTATTCCATCTACTATGCAGTTtgtatatagatgtataatacagtacaagtTTGCCAAGCATTGACACTTATCCCCTTGAATAGCACAGGGAACAGGCTTTACCACACCCATCTTGGTCATAACTGGGTTGAGATAAAATTGAGAGAATTCCAGAGTCTATTGATATGCAGGATGTGCCAAAACAAGAACTGGGGTGTGGCCATGAGGGCAATTTTAGGAGCAAAATTTGCATTGAGAGAGACCGGCTTTCCATATAATACCTGCAGACATCGTAAAACGAATTGTCATAGTCTGTTTGACCGCATGTGGGCACAAACTGGCCCATGATAGAAATATTCTGCTTTGAACAATTCAATTCACGGGGGGGAGCACTATCCTgttcttgtgttgtgtgtgtgtgtgtggtctgttTAAGGAACATGGTTTAACCCTACAATGTTGGGCATAATTTGTTATACTTCTactaaatgttttactttgtgaaatTTGAAATTGTCCAAAAAATTATGTATGAGGAGAATATGTAAATAGTCAATTttagtgaatttaaaaaaaaaaaaaatgtatttcttgtgaTAATATTGCTGTGAACAATAGAACTCAATTGCAAAACTGAATTTGCCAGAACTAATGTGCCTCTTTCATAATGTCAAGTGATGACGGGTAAATCTCTGTAGTTGTCGTCCACCTTTCTATAAATACTGACCAGTTTATATAGTGTACAGCGTGACATTTATGTGCTGGTCTCAGGTCTAGGTAGGGATCCAAAGAAAGGTATTCTTGACTGcacgcacccacacacacgtATTCTTTGACAGAACATGCTGTGACTCTAATATGTAGTATTAGCTGAGAAGAGAGACTGGAAAAACCTGATCGTCTAGTCTGTGTGAGCCCAAGATAAAGAACATACTTCTACCTACAGTGGTGTGTATGATAACCAATACATTTTAGCTTCTGCATTGCTGAGGTTGGGTTCCAGAGGAGAAGGAAAGGAGAGACTGGACACAAATCCTGCGGAAATATCACTGCATGAACAGGAGGTATCAGGACGTGACCAGTTCCAGCACTACAGCAGTAGTTTGGGGGAAAGATGGGCTGCTGCTACAGCACAAGCAAGGAGGGAAAAGAGGAATATGGCAATGAAACATATGGAAATGAAACCTATGGCAATGAAAAACGTGGCAATGGAAAAAATGGCAATGAGAGTGGATGTCGAAGATGCTGTATGCAGGCGAGGAAAGTCTTCCTCAGTCCAGAGACCCATACGTGTCTGAGCTGTGTCAGCACCATTGCCATGTGTGGAATGTGCCTCAGAATGTGGACATAGCGCACCCTCAGATGTCGGCTCTGTGCTGTTCTGCTCCGGTTTCAGTAGCAGGTGTCCAGAAAATGTATCCAACGCCATATGAAACTAATGCAGCGGCCTTCTTCTCAAACCCCTCCTCCCAGAAAGGGTGGGCTTCTGACTTTGTGACGCTTTATTCCATCTGCTATGCAGTTTGTCTATAGATCTGAAGATACAGATAGATATATTACACTGTCTACACATTTGCCAAGCACTTTACCTTTGCCATCATAGGCATAATCGGGTAGAGGTGCAATTGGGAAAATTCCAGGCTTTACGATTAGCAGGATGAgccaaaacaattttaaaagggGTGTGGCCTCGAAGGCAATGTACGACTGTGTAGTTTAGCAAGCAAAATTTGCATTGAGACATGATAGCTGCAGATACAGTAAAATCGAAGTCTGTGTTTGATTGCATGTGAGCACGAACTCAGACAGAAGGGCTTCATGCTGATTTGAAGCTGTACGGAGGATCCACCAGCTCTTTTCTGTCCTTGTTTTAATGCCCTGCTGGCTCTGGCTCCTGTTATCCCCACCCACACCTGGCTCCTATTATCAACCATCCTGAGCTCAAAGGGCTCTGAGAAGGAGGAGAGATGCAATGTACGCTTTGCTGCTGGAGCTACTCTTGAAATCCGTACACTTCATCTGTCAATTAAATTCTTAATCTTAGTGGAAAATAACATTCTAATGTTTGTGTCTGCTAAAATGGTGATGGTTATTTGGAAAATAGATGGCTTTGTTGGTGTGATGACAAACAACAACTGCCAGATGAAAACTAGCAGTTAATCACTTGGATTGGTTGTTAGTTGATTATCCACAGTGGAGGCAACAGTAATTCACATTATCCTGTTCTTGTGCTGAGGTCAGTTTAAGGAACATGGTTTTCATGGTTTAATCCTACAATGTTCGGCACAATTAGTCATGGTTCCACTAGATTCTCTGTAAAATTCAGAATTCGCTTCTATTTTCATATTAACTGGCCTACAGTTAACACCTTTTTCATCTGTATCCCAAGAGGAGAATATGTAAAtagattgtacattttattgatttaagtAATTTGTATGTCTTAGCTGTGTCTATAAACTATGTCCCACAATAGAATTATACCTCTGTgaacaatagaaataaaaagagCAAAACTGAATTGTCAGAACTAATGTACCTCTTTCATAATGTCAAATGATATCAGGTAAATCTCTGTAGTTGTCAT
>TU53839
GGGTAAAGCATTGCCTGCTGTCACCTGACTGAGACAGCCCCCTTCATTGGTCAGGTGACCGTATAAAAGCAGAACGGGAAGACTTCTTTGCTGAAGAGCAGTGGGGGTTGTGGTAACAGGAGGAGAGCAGTAACAGTGAAGAATAATCCAGTGAAGAATAATCCAGTGAAGAATAATCCAGTGAAGAATAATCCAGTGAAGAATAATCCAGTGAAGAATAATCCAGTGAAGAATAATCCAGTGACCAAAAGAGTGCACGCTCAGATGTCGGCTCAATGCTGTTCTGCTCCAGTTTCAGCAGCTAGTATCCAGAAAACCTATCCAAGGCCATATGAAACTAATGCAGGGGCCCTATTCTCAAACCACTCCTCCCAGAGAGGATGGGCTTCTGACTTTGACTCTTTATTCCATCTACTATGCAGTTtgtatatagatgtataatacagtacaagtTTGCCAAGCATTGACACTTATCCCCTTGAATAGCACAGGGAACAGGCTTTACCACACCCATCTTGGTCATAACTGGGTTGAGATAAAATTGAGAGAATTCCAGAGTCTATTGATATGCAGGATGTGCCAAAACAAGAACTGGGGTGTGGCCATGAGGGCAATTTTAGGAGCAAAATTTGCATTGAGAGAGACCGGCTTTCCATATAATACCTGCAGACATCGTAAAACGAATTGTCATAGTCTGTTTGACCGCATGTGGGCACAAACTGGCCCATGATAGAAATATTCTGCTTTGAACAATTCAATTCACGGGGGGGAGCACTATCCTgttcttgtgttgtgtgtgtgtgtgtggtctgttTAAGGAACATGGTTTAACCCTACAATGTTGGGCATAATTTGTTATACTTCTactaaatgttttactttgtgaaatTTGAAATTGTCCAAAAAATTATGTATGAGGAGAATATGTAAATAGTCAATTttagtgaatttaaaaaaaaaaaaaatgtatttcttgtgaTAATATTGCTGTGAACAATAGAACTCAATTGCAAAACTGAATTTGCCAGAACTAATGTGCCTCTTTCATAATGTCAAGTGATGACGGGTAAATCTCTGTAGTTGTCGTCCACCTTTCTATAAATACTGACCAGTTTATATAGTGTACAGCGTGACATTTATGTGCTGGTCTCAGGTCTAGGTAGGGATCCAAAGAAAGGTATTCTTGACTGcacgcacccacacacacgtATTCTTTGACAGAACATGCTGTGACTCTAATATGTAGTATTAGCTGAGAAGAGAGACTGGAAAAACCTGATCGTCTAGTCTGTGTGAGCCCAAGATAAAGAACATACTTCTACCTACAGTGGTGTGTATGATAACCAATACATTTTAGCTTCTGCATTGCTGAGGTTGGGTTCCAGAGGAGAAGGAAAGGAGAGACTGGACACAAATCCTGCGGAAATATCACTGCATGAACAGGAGGTATCAGGACGTGACCAGTTCCAGCACTACAGCAGTAGTTTGGGGGAAAGATGGGCTGCTGCTACAGCACAAGCAAGGAGGGAAAAGAGGAATATGGCAATGAAACATATGGAAATGAAACCTATGGCAATGAAAAACGTGGCAATGGAAAAAATGGCAATGAGAGTGGATGTCGAAGATGCTGTATGCAGGCGAGGAAAGTCTTCCTCAGTCCAGAGACCCATACGTGTCTGAGCTGTGTCAGCACCATTGCCATGTGTGGAATGTGCCTCAGAATGTGGACATAGCGCACCCTCAGATGTCGGCTCTGTGCTGTTCTGCTCCGGTTTCAGTAGCAGGTGTCCAGAAAATGTATCCAACGCCATATGAAACTAATGCAGCGGCCTTCTTCTCAAACCCCTCCTCCCAGAAAGGGTGGGCTTCTGACTTTGTGACGCTTTATTCCATCTGCTATGCAGTTTGTCTATAGATCTGAAGATACAGATAGATATATTACACTGTCTACACATTTGCCAAGCACTTTACCTTTGCCATCATAGGCATAATCGGGTAGAGGTGCAATTGGGAAAATTCCAGGCTTTACGATTAGCAGGATGAgccaaaacaattttaaaagggGTGTGGCCTCGAAGGCAATGTACGACTGTGTAGTTTAGCAAGCAAAATTTGCATTGAGACATGATAGCTGCAGATACAGTAAAATCGAAGTCTGTGTTTGATTGCATGTGAGCACGAACTCAGACAGAAGGGCTTCATGCTGATTTGAAGCTGTACGGAGGATCCACCAGCTCTTTTCTGTCCTTGTTTTAATGCCCTGCTGGCTCTGGCTCCTGTTATCCCCACCCACACCTGGCTCCTATTATCAACCATCCTGAGCTCAAAGGGCTCTGAGAAGGAGGAGAGATGCAATGTACGCTTTGCTGCTGGAGCTACTCTTGAAATCCGTACACTTCATCTGTCAATTAAATTCTTAATCTTAGTGGAAAATAACATTCTAATGTTTGTGTCTGCTAAAATGGTGATGGTTATTTGGAAAATAGATGGCTTTGTTGGTGTGATGACAAACAACAACTGCCAGATGAAAACTAGCAGTTAATCACTTGGATTGGTTGTTAGTTGATTATCCACAGTGGAGGCAACAGTAATTCACATTATCCTGTTCTTGTGCTGAGGTCAGTTTAAGGAACATGGTTTTCATGGTTTAATCCTACAATGTTCGGCACAATTAGTCATGGTTCCACTAGATTCTCTGTAAAATTCAGAATTCGCTTCTATTTTCATATTAACTGGCCTACAGTTAACACCTTTTTCATCTGTATCCCAAGAGGAGAATATGTAAAtagattgtacattttattgatttaagtAATTTGTATGTCTTAGCTGTGTCTATAAACTATGTCCCACAATAGAATTATACCTCTGTgaacaatagaaataaaaagagCAAAACTGAATTGTCAGAACTAATGTACCTCTTTCATAATGTCAAATGATATCAGGTAAATCTCTGTAGTTGTCATCCAGGTCTGTGTGATGTGCTGGTCCTAGGTGGGGATACAACTGGTACTACACAATAGGCATATGTTAGATTGTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013251 False 2720 mRNA 0.41 3 26155755 26161064
TU53839 True 3044 lncRNA 0.41 4 26153236 26161139

Neighbor

gene id symbol gene type direction distance location
AMCG00013244 LOC105892758 coding upstream 368264 25777912 ~ 25784972 (+)
AMCG00013243 slc38a10,LOC107749860 coding upstream 377798 25746665 ~ 25775438 (+)
AMCG00013237 NA coding upstream 598442 25551595 ~ 25554794 (+)
AMCG00013232 NA coding upstream 667616 25479858 ~ 25485620 (+)
AMCG00013234 socs3 coding upstream 729252 25421661 ~ 25423984 (+)
AMCG00013252 ttyh2,LOC106589617,LOC106610147 coding downstream 98901 26260040 ~ 26312137 (+)
AMCG00013254 dnai2,LOC106610195 coding downstream 153147 26314286 ~ 26318743 (+)
AMCG00013253 kif19,LOC107560952 coding downstream 160627 26321766 ~ 26363091 (+)
AMCG00013256 chmp6,LOC108429718,LOC107690936,LOC106589902 coding downstream 237539 26398678 ~ 26404568 (+)
AMCG00013266 NA coding downstream 355165 26516304 ~ 26524306 (+)
G43138 NA non-coding upstream 308642 25807419 ~ 25844594 (+)
G43085 NA non-coding upstream 531997 25620937 ~ 25621239 (+)
G43084 NA non-coding upstream 533231 25619610 ~ 25620005 (+)
G43082 NA non-coding upstream 548998 25603998 ~ 25604238 (+)
G43081 NA non-coding upstream 552059 25600813 ~ 25601177 (+)
G43303 NA non-coding downstream 623814 26784953 ~ 26785561 (+)
G43326 NA non-coding downstream 711682 26872821 ~ 26930253 (+)
G43402 NA non-coding downstream 849233 27010372 ~ 27010651 (+)
G43438 NA non-coding downstream 1108889 27270028 ~ 27417787 (+)
G43673 NA non-coding downstream 2228550 28389689 ~ 28389960 (+)
AMCG00013248 NA other upstream 355223 25793405 ~ 25798013 (+)
AMCG00013236 NA other upstream 631555 25513353 ~ 25521681 (+)
G42858 NA other upstream 1383088 24768424 ~ 24770148 (+)
G42846 NA other upstream 1403841 24747492 ~ 24749395 (+)
AMCG00013198 NA other upstream 1821382 24241269 ~ 24331854 (+)
AMCG00013255 NA other downstream 93835 26254974 ~ 26258982 (+)
AMCG00013257 LOC106612075,LOC107560953 other downstream 206656 26367795 ~ 26396705 (+)
AMCG00013265 LOC107672452,LOC107711237,LOC107567237,LOC107670476 other downstream 266807 26427946 ~ 26478544 (+)
G43263 NA other downstream 363687 26524826 ~ 26540049 (+)
G43309 NA other downstream 647025 26808164 ~ 26811615 (+)

Expression


Co-expression Network