AMCG00013255


Basic Information

Item Value
gene id AMCG00013255
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 26254974 ~ 26258982 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013255
ATGAAGCGGAAGTCCCGCCCCTTTTCCCTCTCGCTGGCGGACTGTGTTGCAGTCTACAAACACCACACCATGCAATCCCGGGTCCTCTTTGTAGCCAGGTGCACAGCTGTCAAGATCAAGAAGAACAAGGACAATGTGAAGTTCAAGGTGCGCTGCAGCCGGTACCTGTACACCCTCGTCATCACAGACAAGGAGAAGGCAGAGAAGCTCAAACAGTCCCTGCCACCTGACGAgacaaggggaaaaaaggcGAGCAGCTCAGTGGTGCAGCAGGATCACAGCTGTGACAAGGAAGACGTGACCTCTAAAAACACTGCTGTCGAGCAAGCCATACAATATTGA
>TU53847
GCGGAAGTCCCGCCCCTTTTCCCTCTCGCTGGCGGACTGTGTTGCAGTCTACAAACACCACACCATGCCACGAAAAATCGAAGAGATCAAAGATTTCCTGCTCACAGCCAGGAGGAAGGATGCCAAATCTGTCAAGATCAAGAAGAACAAGGACAATGTGAAGTTCAAGGTGCGCTGCAGCCGGTACCTGTACACCCTCGTCATCACAGACAAGGAGAAGGCAGAGAAGCTCAAACAGTCCCTGCCACCTGgtcTGGCTGTTAAAGAACTGAAGTGAGAACATCATTGTGTacagaataaaaatattgtaataaaagtTACAAAAAGGCTTTTTGTTCCcc
>TU53853
GGATCTTCCATGGAAAgcttattttacagtttattttagtaTGCCACTTGTATTCATCAGACAGATGCAACCTTGACACTGTGTGGTTTTGCTGTGCGAGATTCTGTGGGGAGCAGTTCCCCTGCCAGACGAgacaaggggaaaaaaggcGAGCAGCTCAGTGGTGCAGCAGGATCACAGCTGTGACAAGGAAGACGTGACCTCTAAAAACACTGCTGTCGAGCAAGCCATACAATATTGACATTCGGCTAAGTAGTTCTATGTAGTGTTGCA

Function

GO:

id name namespace
GO:0010638 positive regulation of organelle organization biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1902905 positive regulation of supramolecular fiber organization biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0051495 positive regulation of cytoskeleton organization biological_process
GO:0031334 positive regulation of protein-containing complex assembly biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0034314 Arp2/3 complex-mediated actin nucleation biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0030838 positive regulation of actin filament polymerization biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0045010 actin nucleation biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0032273 positive regulation of protein polymerization biological_process

KEGG:

id description
ko03010 Ribosome

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013255 True 342 mRNA 0.53 5 26254974 26258950
TU53847 False 341 TUCP 0.47 5 26254979 26257842
TU53853 False 273 lncRNA 0.46 1 26258710 26258982

Neighbor

gene id symbol gene type direction distance location
AMCG00013244 LOC105892758 coding upstream 470002 25777912 ~ 25784972 (+)
AMCG00013243 slc38a10,LOC107749860 coding upstream 479536 25746665 ~ 25775438 (+)
AMCG00013237 NA coding upstream 700180 25551595 ~ 25554794 (+)
AMCG00013232 NA coding upstream 769354 25479858 ~ 25485620 (+)
AMCG00013234 socs3 coding upstream 830990 25421661 ~ 25423984 (+)
AMCG00013252 ttyh2,LOC106589617,LOC106610147 coding downstream 1058 26260040 ~ 26312137 (+)
AMCG00013254 dnai2,LOC106610195 coding downstream 55304 26314286 ~ 26318743 (+)
AMCG00013253 kif19,LOC107560952 coding downstream 62784 26321766 ~ 26363091 (+)
AMCG00013256 chmp6,LOC108429718,LOC107690936,LOC106589902 coding downstream 139696 26398678 ~ 26404568 (+)
AMCG00013266 NA coding downstream 257322 26516304 ~ 26524306 (+)
G43138 NA non-coding upstream 410380 25807419 ~ 25844594 (+)
G43085 NA non-coding upstream 633735 25620937 ~ 25621239 (+)
G43084 NA non-coding upstream 634969 25619610 ~ 25620005 (+)
G43082 NA non-coding upstream 650736 25603998 ~ 25604238 (+)
G43081 NA non-coding upstream 653797 25600813 ~ 25601177 (+)
G43303 NA non-coding downstream 525971 26784953 ~ 26785561 (+)
G43326 NA non-coding downstream 613839 26872821 ~ 26930253 (+)
G43402 NA non-coding downstream 751390 27010372 ~ 27010651 (+)
G43438 NA non-coding downstream 1011046 27270028 ~ 27417787 (+)
G43673 NA non-coding downstream 2130707 28389689 ~ 28389960 (+)
AMCG00013251 NA other upstream 93835 26153236 ~ 26161139 (+)
AMCG00013248 NA other upstream 456961 25793405 ~ 25798013 (+)
AMCG00013236 NA other upstream 733293 25513353 ~ 25521681 (+)
G42858 NA other upstream 1484826 24768424 ~ 24770148 (+)
G42846 NA other upstream 1505579 24747492 ~ 24749395 (+)
AMCG00013257 LOC106612075,LOC107560953 other downstream 108813 26367795 ~ 26396705 (+)
AMCG00013265 LOC107672452,LOC107711237,LOC107567237,LOC107670476 other downstream 168964 26427946 ~ 26478544 (+)
G43263 NA other downstream 265844 26524826 ~ 26540049 (+)
G43309 NA other downstream 549182 26808164 ~ 26811615 (+)
AMCG00013281 NA other downstream 633614 26892596 ~ 26923139 (+)

Expression


Co-expression Network