AMCG00013256 (chmp6,LOC108429718,LOC107690936,LOC106589902)


Basic Information

Item Value
gene id AMCG00013256
gene name chmp6,LOC108429718,LOC107690936,LOC106589902
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 26398678 ~ 26404568 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013256
ATGGGAAACATCTTCGGCAGAAAGAGACGCACTCGAGTGACGGAGCAGGACCGAGCCGTGCTGGTGAGCGTCCGGGCACAAACACGGGGCTGGCGGCAATTGAAACAGCAGCGAGATAAGCTGAAGCAGTACCAGAAGAGGATCTCCCTGCACCTGGAGAAGGAGAGGCTACTGGCTAAGCAGCTGCTGAAGGATGGAAAGAAAGAGAAGGCATTGCTGCTGCTTAAGAAGAAGCGATACCAGGATCAGCTTCTGGACAAGACTGAAAACCAGATAAGCAACCTGGAGCGCATGgttCAAGACCTTGAATTTGCCCAGATTGAGATGAAAGTCATCGAAGGACTGAAGATCGGCAACGACTGTTTGAAGAAGATGCACGAGGTGATGTCTGTGGAGGAGGTGGAGCGCATCATGGATGAGACCCAGGATTCCATCGAGTATCAGAGGCAAATTGACGACATGCTGGCCGGGTCTCTAAACCAGGAAGACGAAGATGCCGTTCTTGCAGAACTGGAGGCTATAACTCAGGCGGAGGAGGTGGAGCTCCCAGAGGTGCCCTCGGAGCCCCTGCCCGCggagccagagccagagccagagaaGGAAAGGGTCAGGAACAAGCCCCAGCCGGAGCTGGTGGCAGCTTCGTAACAATTCTGCATCTCCGTCCCTCCTCCGTACTCGTAGCGACCCCCCAGCCTCTGCCATCTCCCCGCACTTCTCTTTTCTCCTGATGTTCCCAGGAATCTGATCCACGTGACTCTGATCTTCTCTGAGAATAGCAAGCCGCACTCCTATGAGACTGGAGAGCGTCTCGTCACCGCTCCAATTTTATACCGTCTCCAATTATCGTATTTCAGCAGTAAGAAATAGTTAAAAACGTTCAGTTCATCAGGTGATTCTCTCATTTATAATCCACTCAATGCCTACCATTGATATGGAAGGGTCATTTTGGACttctcattatttttaatgacactgtttaattgtaaaaacaagaaaatcaattttaagtgGTTGTGAAAGAATGGGTTTTCTTTACTGCTGCTCCAGGGTATGGGGTTCCTTTTTGCTAGAGTCTTTATTGGgggttttctcttcttttttgaGGGGTGGGACAGAtttggtttgcagttttttgttttttctggcaGAATGGTGTAGATCTTTCAAGGTGCTGGTGGAATATGCTCATAGCTCTGCCTGTTATAGGTTGGCAACCTGGTTCTAGACCAGTCCTCTGCTGTAAAAATCAAGCATGGTGTCGTCCATGTATGTGGTGAGATTCAGTGAAAGTGATGGTTAAAACCCATATTATGTGAAAATAGACTTGCTCTCcacatgttaaaaaataaaatcaacagtaATGTATCCTGTAAATCACTAACCATGTTCTATACCCTTAACCCTTGCTTGTCATTAAAACCTTTATGAATTATAATGCCTTTCCCTGTCCTTTTGGAGAACCAAAGTATGTAGTAGGACCTCTGTCAGATCAATTCCCCAACCTATCGCCGTGCCCCTCTTGCACACATCGCTTTAAAGTACAGAGGCAAAGTGAGCTTGTCACTTTAAACAGCCGAAGAAATTTGACTGGTGCTCTCTAGTGTTTCAGACCCAGATATCACCAGGTCTTATTGTAGAAACCAGGTTGTTTGCTTTCCTCAAGCTCACTGACTTAAGCTCTTCCACACATCTGATTCCTCGCCTGCATTGTTCTCGCAGGCTGCTTCACGGGTTTCACAAACACAAGTGCACCTTTTGGCCACTTCTGGGTTCCCTGTCTTGATTTGTGCTGTAAAACCATGTATGGGAACCtttttctgatgtgtttttcCAGACTGAGTTTGAGTTTATAGAAGTGATAAACCAGATCTTTGCTGGGCTTCTAGGATCTTGGTTACATGTCCTTTCATGCCATAAAGTAGTGATTGACACTTTTTTCTGATTTGATTCAGTATTATGAGTAGAAAGGGACTTGTAAAGCAATAAGGGGTCTCTGCAAAGCATAGCCTCTTGCTGAACATGAAAATATTGTGCTGACACTTCGAGAGATGGAGTAAAAAGACTCTGCTTTAGGAAGCATTTTTTCCTGTGGTACTCCAACAGTAGGTGTTTGTGGGAAAATTTGGACATCTGCCTAGTTACAGTCATATAGTGCTTGATCTGAAAATCTCATGGGGCAGACTTGAGGAGACCCTGCCGTTTGTGTGCATTGGAAGTAAGATTGCAACCAtgcaaccctggtcctggaggaccccccaccctgctggtttttgttccaaccgatctctcgattacttaattgaacccttaatt

Function

symbol description
chmp6 Enables protein N-terminus binding activity. Involved in several processes, including midbody abscission; regulation of protein metabolic process; and viral budding via host ESCRT complex. Located in endosome membrane. Part of ESCRT III complex.

NR:

description
PREDICTED: charged multivesicular body protein 6 isoform X1

GO:

id name namespace
GO:0015031 protein transport biological_process

KEGG:

id description
K12195 CHMP6, VPS20; charged multivesicular body protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013256 True 2316 mRNA 0.46 8 26398678 26404568

Neighbor

gene id symbol gene type direction distance location
AMCG00013253 kif19,LOC107560952 coding upstream 35587 26321766 ~ 26363091 (+)
AMCG00013254 dnai2,LOC106610195 coding upstream 79935 26314286 ~ 26318743 (+)
AMCG00013252 ttyh2,LOC106589617,LOC106610147 coding upstream 86541 26260040 ~ 26312137 (+)
AMCG00013244 LOC105892758 coding upstream 613706 25777912 ~ 25784972 (+)
AMCG00013243 slc38a10,LOC107749860 coding upstream 623240 25746665 ~ 25775438 (+)
AMCG00013266 NA coding downstream 111736 26516304 ~ 26524306 (+)
AMCG00013268 NA coding downstream 120312 26524880 ~ 26529893 (+)
AMCG00013269 NA coding downstream 134331 26538899 ~ 26539854 (+)
AMCG00013270 NA coding downstream 153200 26557768 ~ 26564168 (+)
AMCG00013267 exoc7 coding downstream 184187 26588755 ~ 26608863 (+)
G43138 NA non-coding upstream 554084 25807419 ~ 25844594 (+)
G43085 NA non-coding upstream 777439 25620937 ~ 25621239 (+)
G43084 NA non-coding upstream 778673 25619610 ~ 25620005 (+)
G43082 NA non-coding upstream 794440 25603998 ~ 25604238 (+)
G43081 NA non-coding upstream 797501 25600813 ~ 25601177 (+)
G43303 NA non-coding downstream 380385 26784953 ~ 26785561 (+)
G43326 NA non-coding downstream 468253 26872821 ~ 26930253 (+)
G43402 NA non-coding downstream 605804 27010372 ~ 27010651 (+)
G43438 NA non-coding downstream 865460 27270028 ~ 27417787 (+)
G43673 NA non-coding downstream 1985121 28389689 ~ 28389960 (+)
AMCG00013257 LOC106612075,LOC107560953 other upstream 1973 26367795 ~ 26396705 (+)
AMCG00013255 NA other upstream 139696 26254974 ~ 26258982 (+)
AMCG00013251 NA other upstream 237539 26153236 ~ 26161139 (+)
AMCG00013248 NA other upstream 600665 25793405 ~ 25798013 (+)
AMCG00013236 NA other upstream 876997 25513353 ~ 25521681 (+)
AMCG00013265 LOC107672452,LOC107711237,LOC107567237,LOC107670476 other downstream 23378 26427946 ~ 26478544 (+)
G43263 NA other downstream 120258 26524826 ~ 26540049 (+)
G43309 NA other downstream 403596 26808164 ~ 26811615 (+)
AMCG00013281 NA other downstream 488028 26892596 ~ 26923139 (+)
AMCG00013286 pde6g,LOC102221623,LOC103367935,LOC102781464 other downstream 492941 26897509 ~ 26904963 (+)

Expression


Co-expression Network