AMCG00013258


Basic Information

Item Value
gene id AMCG00013258
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 26479611 ~ 26484414 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013258
CGGACACAACTAGAGCAGTCCCAACGCAGTCTGCGCACCGTGACGTTATCCTACATGTacactgacattttgtttttttatggctCTATCTCACGTAAACCGAGTCTATATGATCTACTTCGGACAATCTGTGGTACTACTGCGATGATATGACATAAACACCGATATAATTCAATCTAAACTGGTTTCGCTGTAGCCTACTGCGTGTTCCCGGTCGGGGTCCTTCAGGCGCGTCCAGGACACCTTTGTTTGGGTACACGTTTACCGGAAGTGTGTGACTTCAAAATGATGAGACAAGATTCTAACGAAGACGTGTCCTTGTTCGATGCAGAGGATGAATCTCCCAGAAAGTCAAGGAAATCAAAGATCAGGCATCCACTGGCCTCCTTCTTCCACTTGTTCTTCCGGATCAGTGCGATCCTGGTGTACCTGCTGTGTGGGATCCTGAGCAGCAGCTTCATCGCCTGCATGGTCACCATCATCCTCTTGCTTTCCTGTGACTTCTGGACGGTCAAGAACATCACAGGGAGACTGATGGTAGGACTGCGCTGGTGGAACCAGGTGGATGATGACGGGAAGAGCCACTGGGTGTTTGAGTCTCGGAAGGCCTCTGCTCAAGGGAAGAAAGTGGCCTCTGATTCGGAGTCTCGTATCTTCTGGCTGGGCCTGGTTATCTGTCCCATCATCTGGGTCATCTTTGCTTTCAGCAGTCTCATCTCCTTCGAAATTAAGTGGCTGGCCGTGGTGACCATGGGTGTAGTGTTGCAGGGGGCCAACCTCTATGGTTATGTCAGATGCAAAGTAGGAAGCAGAAGGACTTTGAAGAACATGGCCACCAGTTACTTTGGCCGACAGTTCTTTCGGCAGgCGATGGCTAAAGAAGAAGGATCATAGAGGCACTTGGGAGGTGGTGAAGAGGTTCCAGCTGTAATATAGTTATAGCTAAAGATATTTTCATAAAAGTGGACTGTGGAAAGATACTCTGTTTCAGCCCTGTAGCGAGTCTTCAGGTGATCTTCTCTAAAGGTATTAATTATATCGGTGAAGCCAGATGTGTGACACTAACAAAGCAATGACAGACCTACAACATGCATTTAAGAGATGCTATACCCCACCCCTGCTGTTATATTGATGataaacaattatttgtttgtgtggaaaCCTGTAGTTACTCTACCCCAGCCTCTACGCAATGTATTACAAACtgtcctttaaaatgtatttgaacaagTCTAGATTTCAGCAGTGAGAGGGAATCAtgtaaataattttgaaatttgACAACTGTATTAGGATAATTTGGGCATTAGCTTTTTGGTATTCCATAGCTTGATAGCTTTTCTATTATGGCATCAATCTGAAGCCAAAGGGTTTATATTATTAACAGTAACAGCTTGATGATTGGAAGAGTTAACTGCAGGATTAAGCATTTGCTTGGGTTTATCCATGAATGGGTGAGTGTTTGATTTATAAGGATGGTCCTTTTgggttttgttggtttaatttctcttttaGTTGGGATATTTTCCTTTAGAAGGTTTTGACATTTACTTAAGCAATAGATTTTTATTCCTTCTTGCACATTGTCCAGATGTATTTGTACATTACCTTAAAGACATagaggggaaaataaacaaaccctttgtaaatatttattaaaccaatGTTTTGAGTGTGCTTTCTTATCACTTTTCAAGATGGATCACTTTCTTGGAGAGAGTGAATCTGCaactttaaaactgaaatgttcaaGAAGTGTAAATATTTAGCTGTACTCTAGTGTAGAAAGGAGGC
>TU53911
gaaatgttcaaGAAGTGTAAATATTTAGCTGTACTCTAGTGTAGAAAGGAGGCAATATCATTGAACAATACTGATACAGACCAAGTAATTAGTGTTTTTGCCATGACTAATGAGAGGAGAAGTACCTGGTTTGCAAACAGTAAGTCTTCTGATACAATTGTAGAAAAGGTGAAATTCCTTTTTCACTTCATATCAAAGGAAGGAAACCCAGTCGCACCCATCCTCACACATACAATCAGC

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013258 True 1794 mRNA 0.42 7 26479798 26484414
TU53911 False 240 lncRNA 0.37 1 26479611 26479850

Neighbor

gene id symbol gene type direction distance location
AMCG00013250 sdk2,sdk2b coding downstream 569489 25839468 ~ 25910122 (-)
AMCG00013249 NA coding downstream 666877 25811718 ~ 25812734 (-)
AMCG00013247 NA coding downstream 675957 25797220 ~ 25803654 (-)
AMCG00013242 NA coding downstream 793886 25685469 ~ 25685725 (-)
AMCG00013239 NA coding downstream 942136 25526642 ~ 25537475 (-)
AMCG00013259 NA coding upstream 1019 26485433 ~ 26492758 (-)
AMCG00013263 NA coding upstream 11522 26495936 ~ 26500765 (-)
AMCG00013262 ush1g,LOC107556601,LOC107698769,LOC107664446,LOC107568596 coding upstream 16782 26501196 ~ 26512078 (-)
AMCG00013261 NA coding upstream 65607 26550021 ~ 26551291 (-)
AMCG00013260 hid1,LOC104925062,LOC104944224,LOC108241245,LOC107710705 coding upstream 82856 26567270 ~ 26588100 (-)
G43204 NA non-coding downstream 112391 26366979 ~ 26367220 (-)
G43194 NA non-coding downstream 167467 26309353 ~ 26312144 (-)
G43184 NA non-coding downstream 221788 26254996 ~ 26257823 (-)
G43171 NA non-coding downstream 330978 26148416 ~ 26148633 (-)
G43165 NA non-coding downstream 359692 26119697 ~ 26119919 (-)
G43400 NA non-coding upstream 509958 26994372 ~ 26995304 (-)
G43410 NA non-coding upstream 561947 27046361 ~ 27046563 (-)
G43412 NA non-coding upstream 565154 27049568 ~ 27049842 (-)
G43417 NA non-coding upstream 571138 27055552 ~ 27059242 (-)
G43425 NA non-coding upstream 642366 27126780 ~ 27126988 (-)
AMCG00013246 NA other downstream 687852 25786143 ~ 25791759 (-)
AMCG00013245 NA other downstream 701888 25776374 ~ 25777723 (-)
AMCG00013241 NA other downstream 851359 25588487 ~ 25628252 (-)
G43070 NA other downstream 962648 25516080 ~ 25516963 (-)
AMCG00013223 tk1,kith,LOC102792372 other downstream 1312838 25162157 ~ 25166773 (-)
AMCG00013264 NA other upstream 69135 26553549 ~ 26557324 (-)
AMCG00013295 NA other upstream 788815 27273229 ~ 27293073 (-)
G43473 NA other upstream 1084350 27568764 ~ 27569151 (-)
G43594 NA other upstream 1583799 28068213 ~ 28072787 (-)
G43684 NA other upstream 1982898 28467312 ~ 28467906 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location