AMCG00013259


Basic Information

Item Value
gene id AMCG00013259
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 26485433 ~ 26492758 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013259
GCTGCTCTAGTTTTTTCTACCACTCGTTCTCCAGGTGACAGAGTGAACAGAAGTATATAAAGGTGAAACTAGAACACAATGGCAGACAACAGCACAGAAGAGGCTCCAGACCAGCCTTATTGTCCTGTCTGTACTGAGCCTTTCAAGAGTCCTGTCATCATTGCCTGTGGTCACCGCTTCTGCAGCTCCTGCTTGGAGCACAGCTGGGTCAAGAAGAAGGACAATGAGGGTTACAGCTGTCCCCAGTGCAAGCAGACATTCGAGGGCAGACCCCAGCTTGAGCAGAAGCCCCTGGTGAATGGGACAGGGGGAGGAGAGCTTGAGAAAGCAGAGGAGCCTAAAACAGTAGAGGAGACAATGACAGCTGAGGAGCCCGTAAAAGCTGAGGAGCCTAAAACAGTAGAGGAGCCAAAGACAGCTGAGGAGCCTAAACCAGTAGAGGAGCCAAAGACAGCTGAGGAGCCTAAAACAGTAGAGGACTCTCCTAAAACAATTGAGGAGCCCAAGAAAGCTGAGGAGCCCAAGAAAGCGGATGACCAACAGAAGGCAGGTGAATGTAATAAAGCAGAAAAGAAGGTGGAAGAAGAGAGTATAAAGCCACCCACAGAGGAACACAAGACAGTGGACACTCTGGGCCAAGATGATGTGATGTGCGACTCCTGCATCGAGGCGCCCTCCAAGGCTCAGAAGTCCTGCCTCACCTGCATGGTCTCCTACTGCGAGAGCCACCTCCGACCTCACTTAGAGAAAAGCAAGTTCAAGAGCCATCGCCTGGTGGACCCGCTGACGGACATCGAGCGGAGGACCTGCGAGACGCACAAGATGCCCCTGGAACTCTTTTGCCAGGTGGATGAGTGCTGCATCTGCCAGGACTGCACGGCTGAGGAGGAGCACGAGGGCCACAAGACCATGCCCGTGGGTGAGGCGAAGAAGTGGATTGAGaAAGAACTGCAGAAGAAGCAGGCAGAAATGACCAAAACCATGACCGCAGCGGAGAACGCCATCAACAAGCTAGAGAGCAACACTGTTTCCATTGAGAATTCTGTGAAGGAGGTCAAAGTCACCATTGAACAACAGTTCTTGCTCCTGCTGGAGGAGGTGGAGAAGGCCAAGAAAGAGGTGAAGGAGTTTTTGGAAAATGAAGAAAGCTCTGCCATCAAGCAGGCGGAGGGAATCAAGGCCCACATAGAGCAGCAGTGTGGCGAGCTGAAGAAAACACAGACGCAGGTGGAGAAGCTGTCGAAGATCAAGAATGATATTGACTTCCTGCAGGAGTACAGTGACTGGAAACGGGGAACCCCTGATGTCACTCTGCCTGGGGTTTACATCCGCCTGATGGACCGTCTCCCCAACTTTAGCCGAGTGGTGATCGAGGCCACGCACGAGATCTGTAACAGTCTGCTCAACACCTACAGAGACAACCTCAAGGGCATCTGCAAAAATGataaTTGTAGTATAAAAACCACAGTACAGCCGTTATTCACAGCTAAACATCACAGCTCAGTGGCAGAGCCAAAGACCCGCCTGGAATTCCTTAATTATTCTGCCACCGTGACCTTTGACCCAGAAACGGCGCACAAGTACCTGCGTCTCACGAAGGAGAACAGGAAGGTGACGAACACCACGCCGTGGCAGCATCCCTACCCTGATGTCCCCGACCGCTTCACACACTGGCGGCAGGTGCTCGCCACCAACAGCTTCTACCTGGGCAGACACTACTTTGAGGCAGACATCAGGGGGGAGGGCACCCACGTGGGGCTCACCTACAAGAGCATCGACCGCCAGGGCCAGGAGAGCAACAGCTGCATCACAGGCAACGACTTCTCCTGGTGCCTGGGCTGGAACGGCAAGGAGTTCTCCGCCTGGCACAGCGACGTGGCGACGCCCCTCAAAGCAGACCCGTTCACCCGCATCGGGGTGTATGTTGACTACGCCCGGGGGATCCTGAGTTTCTACGGAGTCAATGACACCATGACTCTCATTCACAAGTACCAGGCGCTCGAGTTCCGTGAGCCACTCTACCCGGCTTTCTGGCTCTCCAAGAAGGAGAACGTGGTTCTGCTGGTCAGCCCTGGGGAGGTTCCTCGTTCGAAGAGCCCATCACCACCCTCAGACTCTGAGCTTCCTTAACACCAAAGTAACCAACAGTCCAGAAACGCACTGCTTGCTGCCACTCTCATATTTCCAgcgtcaaaaaaaaaaaaaagaaatctgggCAAAAGCCAAGATTATCGGCAGAGATAGAGGATATTTGTTGTCAACATACCTGCAAGCAGCTATGCCTGATGCACTTTGTATAGAGAATGGGATACAGTGATACTAAGGTGTGTGGAACTGTCTCTGATCTATTTCTATAACATCTCCAAGGTGTCTAATCATCTTGTTTGTGATTAAAAGTGGTTTGGAAATGCTGTCATTGCTGCTTTTCcataattcaataaaatggGATAGTGTGTGAGGGAATGTATATAAATTACTCCTCTGAAATACTGTagaaatcaaagtaaaaaaacacagaaagtgtTAATGTGAAGccaatttcatttttgtaatgattgttgcatttg

Function

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K12006 TRIM16; tripartite motif-containing protein 16

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013259 True 2567 mRNA 0.51 6 26485433 26492758

Neighbor

gene id symbol gene type direction distance location
AMCG00013250 sdk2,sdk2b coding downstream 575311 25839468 ~ 25910122 (-)
AMCG00013249 NA coding downstream 672699 25811718 ~ 25812734 (-)
AMCG00013247 NA coding downstream 681779 25797220 ~ 25803654 (-)
AMCG00013242 NA coding downstream 799708 25685469 ~ 25685725 (-)
AMCG00013239 NA coding downstream 947958 25526642 ~ 25537475 (-)
AMCG00013263 NA coding upstream 3178 26495936 ~ 26500765 (-)
AMCG00013262 ush1g,LOC107556601,LOC107698769,LOC107664446,LOC107568596 coding upstream 8438 26501196 ~ 26512078 (-)
AMCG00013261 NA coding upstream 57263 26550021 ~ 26551291 (-)
AMCG00013260 hid1,LOC104925062,LOC104944224,LOC108241245,LOC107710705 coding upstream 74512 26567270 ~ 26588100 (-)
AMCG00013272 NA coding upstream 114314 26607072 ~ 26614584 (-)
G43204 NA non-coding downstream 118213 26366979 ~ 26367220 (-)
G43194 NA non-coding downstream 173289 26309353 ~ 26312144 (-)
G43184 NA non-coding downstream 227610 26254996 ~ 26257823 (-)
G43171 NA non-coding downstream 336800 26148416 ~ 26148633 (-)
G43165 NA non-coding downstream 365514 26119697 ~ 26119919 (-)
G43400 NA non-coding upstream 501614 26994372 ~ 26995304 (-)
G43410 NA non-coding upstream 553603 27046361 ~ 27046563 (-)
G43412 NA non-coding upstream 556810 27049568 ~ 27049842 (-)
G43417 NA non-coding upstream 562794 27055552 ~ 27059242 (-)
G43425 NA non-coding upstream 634022 27126780 ~ 27126988 (-)
AMCG00013258 NA other downstream 1019 26479611 ~ 26484414 (-)
AMCG00013246 NA other downstream 693674 25786143 ~ 25791759 (-)
AMCG00013245 NA other downstream 707710 25776374 ~ 25777723 (-)
AMCG00013241 NA other downstream 857181 25588487 ~ 25628252 (-)
G43070 NA other downstream 968470 25516080 ~ 25516963 (-)
AMCG00013264 NA other upstream 60791 26553549 ~ 26557324 (-)
AMCG00013295 NA other upstream 780471 27273229 ~ 27293073 (-)
G43473 NA other upstream 1076006 27568764 ~ 27569151 (-)
G43594 NA other upstream 1575455 28068213 ~ 28072787 (-)
G43684 NA other upstream 1974554 28467312 ~ 28467906 (-)

Expression


Co-expression Network