AMCG00013273 (kcnj2,LOC104928150,LOC107597836,LOC107704237)


Basic Information

Item Value
gene id AMCG00013273
gene name kcnj2,LOC104928150,LOC107597836,LOC107704237
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 26737554 ~ 26738834 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013273
ATGGGAAGCGTGCGAGCTAACCGCTACAGCATCGTGTCATCCGAGGAAGACGGAATGAAGCTGGCCACGATGGCAGTGCCCAATGGCTATGGGAACGGCAAAGGCAAAGTGCACACGCGGCACCAGAGCCAGAGTCGCTTTGTCAAGAAGGACGGCCACTGCAACGTGCAGTTCATCAATGTGAGCGAGAAGGGTCAGCGATACCTGGCCGACATCTTCACGACTTGCGTGGACATCCGTTGGCGCTGGATGCTGGTCATCTTCTGCCTGGCCTTCGTGCTTTCCTGGCTTTTCTTTGGCTGTGTCTTCTGGCTGGTGGCTCTCTTCCATGGGGACCTGAATAACACCACACAGAAATGTGTCTCCAACGTCAGCAGCTTCACGGCGGCCTTCCTTTTCTCCATCGAGACGCAAACCACCATTGGATACGGTTTCCGCTACGTAACGGACGAGTGCCCCGTTGCCGTATTCATGGTGGTTTTCCAGAGCATCGTAGGCTGCATCATCGACGCATTTATTATCGGTGCCGTGATGGCCAAAATGGCCAAGCCCAAGAAAAGGAATGAGACCCTGATCTTCAGCCACAATGCCACGGTGGCAATGCGAGACAACAAGCTGTGCCTGATGTGGCGCGTGGGGAATCTGCGCAAGAGTCACCTGGTGGAGGCCCACGTAAGGGCGCAGCTTCTCAAGTCCAGGACCACTGCCGAGGGGGAATATATCCCTCTGGACCAGATAGATATCGACGTTGGCTTCGACAGCGGCATCGACCGCATCTTCCTGGTGTCACCAATCACCATTGTGCATGAGATCGATGAGGATAGCCCCTTCTATGGCATGAGCAAGCAGGATTTCGAGGCCTCTGAATTTGAGATTGTGGTCATCCTTGAGGGTATGGTGGAAGCCACTGCCATGACGACCCAGTGCCGCAGTTCCTACCTGGCAGGAGAGATCCTCTGGGGTCACCGCTTTGAGCCAGTCTTGTTTGAGGAGAAGAACTACTACAAAGTAGACTACTCACGCTTCCACAAAACCTACGAGGTGCCGAGCACCCCTCTCTGCAGTGCCAGGGACCTTGCTGAGAAGAAGTACATCCTACCTAACTCCAACTCCTTCTGCTACGAGAATGAGGTTGCCCTCCTGAGTAAGGAGGACATGGAGGACATTGGGAGCAGCTTAGGGCCCGAGGGcaccaacacagacacaaactcaGACACAGACCACACTCAGGCCACCGTGCCTCTAGAGCCAAGGCCTTTGAGACGAGAATCGGAAATATGA

Function

symbol description
kcnj2 Enables identical protein binding activity; phosphatidylinositol-4,5-bisphosphate binding activity; and voltage-gated potassium channel activity. Involved in several processes, including cardiac muscle cell action potential; potassium ion import across plasma membrane; and protein homotetramerization. Is intrinsic component of membrane. Part of voltage-gated potassium channel complex. Implicated in Andersen-Tawil syndrome; familial atrial fibrillation; familial periodic paralysis; and short QT syndrome. Biomarker of atrial fibrillation.

NR:

description
PREDICTED: inward rectifier potassium channel 2

GO:

id name namespace
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0006813 potassium ion transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005242 inward rectifier potassium channel activity molecular_function

KEGG:

id description
K04996 KCNJ2, KIR2.1; potassium inwardly-rectifying channel subfamily J member 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013273 True 1281 mRNA 0.55 1 26737554 26738834

Neighbor

gene id symbol gene type direction distance location
AMCG00013274 NA coding upstream 11115 26725234 ~ 26726439 (+)
AMCG00013267 exoc7 coding upstream 128691 26588755 ~ 26608863 (+)
AMCG00013270 NA coding upstream 173386 26557768 ~ 26564168 (+)
AMCG00013269 NA coding upstream 197700 26538899 ~ 26539854 (+)
AMCG00013268 NA coding upstream 207661 26524880 ~ 26529893 (+)
AMCG00013275 NA coding downstream 115590 26854424 ~ 26856636 (+)
AMCG00013290 NA coding downstream 123924 26862758 ~ 26870903 (+)
AMCG00013285 nploc4 coding downstream 169957 26908791 ~ 26920057 (+)
AMCG00013282 NA coding downstream 185732 26924566 ~ 26928580 (+)
AMCG00013284 NA coding downstream 190425 26929259 ~ 26963188 (+)
G43138 NA non-coding upstream 892960 25807419 ~ 25844594 (+)
G43085 NA non-coding upstream 1116315 25620937 ~ 25621239 (+)
G43084 NA non-coding upstream 1117549 25619610 ~ 25620005 (+)
G43082 NA non-coding upstream 1133316 25603998 ~ 25604238 (+)
G43081 NA non-coding upstream 1136377 25600813 ~ 25601177 (+)
G43303 NA non-coding downstream 46119 26784953 ~ 26785561 (+)
G43326 NA non-coding downstream 133987 26872821 ~ 26930253 (+)
G43402 NA non-coding downstream 271538 27010372 ~ 27010651 (+)
G43438 NA non-coding downstream 531194 27270028 ~ 27417787 (+)
G43673 NA non-coding downstream 1650855 28389689 ~ 28389960 (+)
G43263 NA other upstream 197505 26524826 ~ 26540049 (+)
AMCG00013265 LOC107672452,LOC107711237,LOC107567237,LOC107670476 other upstream 259010 26427946 ~ 26478544 (+)
AMCG00013257 LOC106612075,LOC107560953 other upstream 340849 26367795 ~ 26396705 (+)
AMCG00013255 NA other upstream 478572 26254974 ~ 26258982 (+)
AMCG00013251 NA other upstream 576415 26153236 ~ 26161139 (+)
G43309 NA other downstream 69330 26808164 ~ 26811615 (+)
AMCG00013281 NA other downstream 153762 26892596 ~ 26923139 (+)
AMCG00013286 pde6g,LOC102221623,LOC103367935,LOC102781464 other downstream 158675 26897509 ~ 26904963 (+)
G43434 NA other downstream 419468 27158302 ~ 27158721 (+)
AMCG00013298 NA other downstream 646831 27385665 ~ 27415286 (+)

Expression


Co-expression Network