AMCG00013275


Basic Information

Item Value
gene id AMCG00013275
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 26854424 ~ 26856636 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013275
ATGATCGCGCTGCCCAACGCCTCGCTGTCCATCCCTCCGGAAGACACAGGGAGCTCGGGGGAAGTCCAGCGCTCAGAGTGCGTGCTGGGCTTCATCCCAGTCATTTACTACAGCGCCCTCCTCTGTGTGGGAATGCCAGTGAACATACTGACAGCTGTGGCTTTGTCTCGCCTGGCAGCCCGCACTAAGAAGTCCTCCTACCTGTACCTACTGGCGCTGACGGGCTCCGATATCCTGACACAGCTCTTCATTGTCTTTGTGGGCTTCCTCCTGGAGACGGCCATCTTCCACCGTGAAGTCCCCGAGCTGCTCCTGCACTCTGTCAGTGTGATGGAGTTTGCCGCTAACCACGCCTCCATCTGGGCCACGGTGACCCTCACAGTGGACCGCTACATGGCTCTGTGCCACCCACTGCGCCACCGGCAGATCAGCTTTCCAGAGCGCGCCAGGAAGATCATCGCGGCCGTGTTTACATTGGCACTGGCCTCTGGAGTCCCTTTCTACTGGTGGTCGGACATGTGGAGGGTCAGCCATCCGCCCACCGCACTGGACCGGGTTCTCATCTGGACGCACTGCACTATAATCTACTTCCTCCCCTGCAGCATCTTCCTGGTGCTCAATTCCCTCATCATCTACCGGCTGAAGATCCGGCACCGCAAACAGTGTCACGAGGAGTGCCAACAGCCAGCAACCAAACGCTTAGGCAAAACGACAGCCATACTGCTGTCCATAACCTCGGCATTCTCGGTTCTGTGGGCGCCGCGCACCATTGTGGTCATCTACCACCTCCATGTCTCCTCTGTGAACCGCAACTGGCGGGTGCACTTGGCCTATGACCTTGCCAACATGCTGGCCATGCTCAACACTGCAGTCAACTTTTTCCTCTATTGCTTCGTCAGTAAGCTTTTCCGTGCAGCTGTCCGGGATGTCCTCTACCTGCGGGGGGGACCCCTACCTCCACACCACCCCCTCACCCACCAGCATGCCCCCTCCAATGCCTCCAACTGCTCCTCGTCCTGCAGCATGACAGGCAAGCAACGAGACCTCACCCCCGTGCCACCCAAGAGAGCAGCCATCAGGCTATAG

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K08430 GPR142; G protein-coupled receptor 142

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013275 True 1086 mRNA 0.59 2 26854424 26856636

Neighbor

gene id symbol gene type direction distance location
AMCG00013273 kcnj2,LOC104928150,LOC107597836,LOC107704237 coding upstream 115590 26737554 ~ 26738834 (+)
AMCG00013274 NA coding upstream 127985 26725234 ~ 26726439 (+)
AMCG00013267 exoc7 coding upstream 245561 26588755 ~ 26608863 (+)
AMCG00013270 NA coding upstream 290256 26557768 ~ 26564168 (+)
AMCG00013269 NA coding upstream 314570 26538899 ~ 26539854 (+)
AMCG00013290 NA coding downstream 6122 26862758 ~ 26870903 (+)
AMCG00013285 nploc4 coding downstream 52155 26908791 ~ 26920057 (+)
AMCG00013282 NA coding downstream 67930 26924566 ~ 26928580 (+)
AMCG00013284 NA coding downstream 72623 26929259 ~ 26963188 (+)
AMCG00013289 cep131 coding downstream 107052 26963688 ~ 26981369 (+)
G43303 NA non-coding upstream 68863 26784953 ~ 26785561 (+)
G43138 NA non-coding upstream 1009830 25807419 ~ 25844594 (+)
G43085 NA non-coding upstream 1233185 25620937 ~ 25621239 (+)
G43084 NA non-coding upstream 1234419 25619610 ~ 25620005 (+)
G43082 NA non-coding upstream 1250186 25603998 ~ 25604238 (+)
G43326 NA non-coding downstream 16185 26872821 ~ 26930253 (+)
G43402 NA non-coding downstream 153736 27010372 ~ 27010651 (+)
G43438 NA non-coding downstream 413392 27270028 ~ 27417787 (+)
G43673 NA non-coding downstream 1533053 28389689 ~ 28389960 (+)
G43712 NA non-coding downstream 1881487 28738123 ~ 28738753 (+)
G43309 NA other upstream 42809 26808164 ~ 26811615 (+)
G43263 NA other upstream 314375 26524826 ~ 26540049 (+)
AMCG00013265 LOC107672452,LOC107711237,LOC107567237,LOC107670476 other upstream 375880 26427946 ~ 26478544 (+)
AMCG00013257 LOC106612075,LOC107560953 other upstream 457719 26367795 ~ 26396705 (+)
AMCG00013255 NA other upstream 595442 26254974 ~ 26258982 (+)
AMCG00013281 NA other downstream 35960 26892596 ~ 26923139 (+)
AMCG00013286 pde6g,LOC102221623,LOC103367935,LOC102781464 other downstream 40873 26897509 ~ 26904963 (+)
G43434 NA other downstream 301666 27158302 ~ 27158721 (+)
AMCG00013298 NA other downstream 529029 27385665 ~ 27415286 (+)
G43476 NA other downstream 732503 27589139 ~ 27590818 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000055_00388011_00390854 GPR142 coding CI01000055 null 387361 ~ 390956 (+)