AMCG00013276


Basic Information

Item Value
gene id AMCG00013276
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 26830584 ~ 26832689 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013276
ATGCTGGAGAGCGGTGCCACGGTCATCAATCACTCGATGATCCTGGTCCAGAGGCTGGAGGCACTGCTGGTCCAGGGCAACGGCAGCGATGTGACCCTGCGCGTCCAGACACTGCACTCGGACGAGGTGAAGGTGATCGCAGCCCATGCCCTGGTGCTGTCCCTGCAGAGCGAGGTGTTCGAGGGGCTGCTGCACAGCCGCAACTCCAGCTCGCTGACCCTGCGGGAGCCAATGGACTGTGCCGCGGTCTTCGACAAGTTCATCAGGTATCTGTACTGCGGGGAGATTGCAGTGCAGCTGGAACAGGCCATCCCTCTGCACAAACTGGCCAGTAAATACCGCGTGACAGCCCTGCAGACAGGACTCAGCCTGTACATGACGCAACACCTGGCCAGTGACTCCACCAATGGCCATGTGGTCAGCTGGTACCACTACGCCATGCAGACAGGGGATGTGGCTCTGAGGGACAGCTGCCTGCAGTTCCTCTCCTGGAACCTGTCCTCGGTCTTCCACAGTGGGGAGTGGGGCTCAGTGAGCGACGACTTGCTCCTGTCGCTGCTGCAGCGCTCAGACCTCATCTTGCAGAGCGAGCTGGAGCTCTTCGAGGCCCTGGAGGCCTGGATTGGGCAGAACCAACCGGGGGGCCTGACCATTGAGAACTCCTTGAGGGCCGTGCGATATGCCATGATCTCCCCCCAGCAGCTGTTCCGACTGCAGAAACAGTCCCCGGTGTTGCTCAAATACCACGAGTCGGTGCGGGACCTGCTGTACATGGCCTTCCAGTTCCACTCCGCCTCCCCTCTACAGCTGGCCAAGTACTTCGACGTCAACTGCAGCCTCTTCACGCCCCGTAACTACCTCTCGGCAGCCTGGGGGTCCCCTTGGATCATCAACAACCCCACTCGGGACGACCGCAGCACGAGCTTTCAGACTCAGTTGGGACCCAGTGGCCACGATGCCAGCAAGAAGGTGACCTGGAATGCGCTGTTCTCCCCGCGGTGGCTCCCCGTCAGCCTGCGGCCTGTGTACACGGAGCACGGCGCCATCCAGGCAGCGCGCTCTGACAACGGCCACCCCCGCATCATCGTCACCCCCGCCACCTCCAGCGCGGACTTTGCCGGCGTCAGCTTCCAGAAGACGGTGATCGTGGCGGCGCGGCAGCAGGGCAAGGTGGTGGTGCGCCACGTCTACAACTTCCACCAGAGCACCGAGGAGACCGGGGACTTCCTGGCGGAGGCCGACCTGCAGAAACGGGCCTCCGAGTACCTCATCGACAGCTCGCTCTACATGCACATCGTGGTCAAGCCCATCTACCACAGTCTCATCAAGGCCAAGAAGTGA

Function

GO: NA

KEGG:

id description
K24808 BTBD17; BTB/POZ domain-containing protein 17

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013276 True 1341 mRNA 0.62 2 26830584 26832689

Neighbor

gene id symbol gene type direction distance location
AMCG00013277 LOC102221885 coding downstream 9607 26813858 ~ 26820977 (-)
AMCG00013271 NA coding downstream 181070 26647688 ~ 26649514 (-)
AMCG00013272 NA coding downstream 216000 26607072 ~ 26614584 (-)
AMCG00013260 hid1,LOC104925062,LOC104944224,LOC108241245,LOC107710705 coding downstream 242484 26567270 ~ 26588100 (-)
AMCG00013261 NA coding downstream 279293 26550021 ~ 26551291 (-)
AMCG00013279 NA coding upstream 55799 26888488 ~ 26892418 (-)
AMCG00013278 NA coding upstream 71125 26903814 ~ 26906966 (-)
AMCG00013280 NA coding upstream 166885 26999574 ~ 27001457 (-)
AMCG00013292 NA coding upstream 312958 27145647 ~ 27159340 (-)
AMCG00013294 LOC106589628,LOC102791232,LOC102301473,LOC101472949,LOC100695060,LOC101161443 coding upstream 467138 27299827 ~ 27307855 (-)
G43204 NA non-coding downstream 463364 26366979 ~ 26367220 (-)
G43194 NA non-coding downstream 518440 26309353 ~ 26312144 (-)
G43184 NA non-coding downstream 572761 26254996 ~ 26257823 (-)
G43171 NA non-coding downstream 681951 26148416 ~ 26148633 (-)
G43165 NA non-coding downstream 710665 26119697 ~ 26119919 (-)
G43400 NA non-coding upstream 161683 26994372 ~ 26995304 (-)
G43410 NA non-coding upstream 213672 27046361 ~ 27046563 (-)
G43412 NA non-coding upstream 216879 27049568 ~ 27049842 (-)
G43417 NA non-coding upstream 222863 27055552 ~ 27059242 (-)
G43425 NA non-coding upstream 294091 27126780 ~ 27126988 (-)
AMCG00013264 NA other downstream 273260 26553549 ~ 26557324 (-)
AMCG00013258 NA other downstream 346170 26479611 ~ 26484414 (-)
AMCG00013246 NA other downstream 1038825 25786143 ~ 25791759 (-)
AMCG00013245 NA other downstream 1052861 25776374 ~ 25777723 (-)
AMCG00013241 NA other downstream 1202332 25588487 ~ 25628252 (-)
AMCG00013295 NA other upstream 440540 27273229 ~ 27293073 (-)
G43473 NA other upstream 736075 27568764 ~ 27569151 (-)
G43594 NA other upstream 1235524 28068213 ~ 28072787 (-)
G43684 NA other upstream 1634623 28467312 ~ 28467906 (-)
G43869 NA other upstream 2420707 29253396 ~ 29254316 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_026178 btbd17b coding NC_007114.7 CM002887.2 12884117 ~ 12890779 (-)