AMCG00013279


Basic Information

Item Value
gene id AMCG00013279
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 26888488 ~ 26892418 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013279
GTTTCCTGTTTGAAGCCAtgtggtttgttttccattaggggtgaagattaaaaatattgaaCCTACCAAATCAAACTACCTGAGAATATGGGCAAACATAGAAACATTAAGAAAGTCGATCCCTTTAAGAAAGGGTCCAAAAAAGATCAACCGCAAAGTAAAGCGCCGAAGAAAGATGCTAAACCCAATCTCGGAGAAGATCTGGACCACATCCCCTACCGGCTTCGAGAGATCATGAAGAGCAAGGAAAGGATGAAAAGACAACGGCTCCAGGCCGAGGCCTTCCAGCTGCAGACCGATATCCCCGTGCCCAAGTTCCACAGAGGCAAGAGGGAGTCGGAGAAAGCATACTTCAGGCGCATGAACCAGGAGACTCAGCACGTCCTCTTCCTCACAAACAACCAGCTGGAGAACCAACCAGAGAAGGAGGCGCCCCAGGAGAAGGCCAAgtcagagaagaagaaagaCTTCGACAAGACCAGACTCAACAGGCTGCTGAAGAAGAAGGTGGAAAGGAAAGAGCAGAGAAAAGAGAAGGAGATGTTCACAGacactgtgaaatttggtgagGTTGCCATGGCACCCCCATCCCTCACCGCGAAGCCCAGGAAAGCGCCGATCAAGGCAAAGGGTGGATGCAAGAACCTGCTGCTGAGTCCCCTGCTCGGCTCGGCCCTGGTCTCCGCCGTCAAACCTTCCATGGCCCGGCAGAGGATAATGGAGGAGGAGAGGCAACGCGTGGTGCTGGCCTACCGCCGTCTCAAAGCAGCAAAGCAGGAGAAGCGGGACTCCGCCGCAGCCAGGCCAGACAGACGGAACAAAAAGCTGCAGTAAAAAGGAAGGAATAAGTCCTCTGTCCTTCTCGGAGTGTGCCTCCCCCGGCGAAGTGCTTGGCCACATGGGTTAGCGTCGGCGTGCGAGGCACTGAGAGACCACACAACTGACTTCTCAGGGGCTTCTGGCCAATGACAGGCTGGAAACAGGGCCTTTAGGGGTGCAGAAAAAATGACAGTGGCAGATAATCACATTAGCAGCCTCTCGGGTGCTTTTGTAACTTTTCTCCCGTAGCTCGGATGCTTCGGAAACCAACTTTGAGCAGTTTAAACTGGAAATCGTATTATCAACAGAAATCCATATAGGGGGGATTTTATATAACgccgtattttttttttctttctttctgatggCTGTGTCTGACAGTGAAGTGAGGTTAAGGTTGTATAGTGCAAGGTACTGTCTGGATTTAAAGATACGATAAGTGATAAGGAGGCCACTGGTacatttcttctgttcttatttCACCAACTCACGTGTGCCTTTTTTCAACATAACATCATTTTGTACAAATGCTAAGTGATTATAATAACAGCCTAGAGTGAGCAGAAAGGAGCAATTTTCAGTGGAAAGGGTGGTTTGGGGACATGGCCATGCATCCTCACTGCCACTAGGTGGGAGTAGCTGCCTGGCTGAAGTGACTGATTTTGATACTTGATCACACGGTGCCTTTCCCCTCGACTCAGATGAGCTTAAGCATCAtaagaataatgaaaatatagacCAATACAGTTATTAAATCTACTTCATTTGTATTCCTTTGAacatctttagtttttttttttaaataattagtgCTGTGCATATTTACTCTATACAAACAAGTAAGTAAAATGCAGTAATTATCCGgctttaataaatgtttgtcATGAGTGGCTTCTGGGCCCAGCTGAACTGGAAATGGTGTGCAACAGGTTTGCATAATACTGCTAGGAAATGCCAGAGAGCTGCAGCATTTGAATTTCATAACCATAAAGAAGAAGCACCTGTGTGAGGGTGGGACTGTGTAGAGGGGTCAGCAAACTGACAGAAGTTTTTCTTATCTCTCTTCCTTATGTTCAGAATTAAGCTCATCTATTCAGCTTTACATAGTTGTCTTCCTGAATTTTGCTTGCTGATTGCTGTGGCCATGGTGATGGAACATGAAGCAGCAAATTCATTGTGAAGGCTCTCCTGGTACGTCTTCGAGAAGCTTTGAAAACCTGTTTGTTCCTTCTCTACAAAGACACTCATGATGACTGATACCCTAAATcatcaaattaatattgttatgacttttttgtttagttgagTCTTGATTGTCACAGTCTGTGATTTCTCGGCAAGATGGTTCCTTTATTCATGATTTTCTCTCCGTTCTCGCAATGATATTTAACTTCCCCTCCCCCGACCCcaaccttttttcccctcagtctAGTGCAAAGTAACATGGTGTCTGGGATACCCGAGTGGAGAACAGCACTGCCAAGAATAAGATAACAACAGCACCCGGCCGTTCAGGCCTTTGTGCTGTTTTGTGCAAAATGGCGTTAAAAATACCATTGTCTTTCCATGCATACTTCCCCGTCACACTACCTTGTTCCTGGGTTGAGCTACACTTCCCTAAACCTGTACCTGTGTACAGATGACACATGACACTGACCTTCAGCTATATTTAACCACCGTGCGGCAGAATCTAGTTCATGTAAAGCGATTTCAGCCTGTCTCATAAACTGAGCAGTCTGAAATATTGTCTTTGAGCATGATTATATAACTGCTATTTCAgcaaaaagtgaaataaaatttGTTAcgcagtttttttgttgtattggtTATTTGTACAACGGTGCAGTAGGCTGTTTAATGAGTTCTTGGTGAAATTATGGATAACTGGTGGTGCACGTTTAGG

Function

GO: NA

KEGG:

id description
ko03008 Ribosome biogenesis in eukaryotes

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013279 True 2722 mRNA 0.45 6 26888488 26892418

Neighbor

gene id symbol gene type direction distance location
AMCG00013276 NA coding downstream 55799 26830584 ~ 26832689 (-)
AMCG00013277 LOC102221885 coding downstream 67511 26813858 ~ 26820977 (-)
AMCG00013271 NA coding downstream 238974 26647688 ~ 26649514 (-)
AMCG00013272 NA coding downstream 273904 26607072 ~ 26614584 (-)
AMCG00013260 hid1,LOC104925062,LOC104944224,LOC108241245,LOC107710705 coding downstream 300388 26567270 ~ 26588100 (-)
AMCG00013278 NA coding upstream 11396 26903814 ~ 26906966 (-)
AMCG00013280 NA coding upstream 107156 26999574 ~ 27001457 (-)
AMCG00013292 NA coding upstream 253229 27145647 ~ 27159340 (-)
AMCG00013294 LOC106589628,LOC102791232,LOC102301473,LOC101472949,LOC100695060,LOC101161443 coding upstream 407409 27299827 ~ 27307855 (-)
AMCG00013293 NA coding upstream 443872 27336290 ~ 27339310 (-)
G43204 NA non-coding downstream 521268 26366979 ~ 26367220 (-)
G43194 NA non-coding downstream 576344 26309353 ~ 26312144 (-)
G43184 NA non-coding downstream 630665 26254996 ~ 26257823 (-)
G43171 NA non-coding downstream 739855 26148416 ~ 26148633 (-)
G43165 NA non-coding downstream 768569 26119697 ~ 26119919 (-)
G43400 NA non-coding upstream 101954 26994372 ~ 26995304 (-)
G43410 NA non-coding upstream 153943 27046361 ~ 27046563 (-)
G43412 NA non-coding upstream 157150 27049568 ~ 27049842 (-)
G43417 NA non-coding upstream 163134 27055552 ~ 27059242 (-)
G43425 NA non-coding upstream 234362 27126780 ~ 27126988 (-)
AMCG00013264 NA other downstream 331164 26553549 ~ 26557324 (-)
AMCG00013258 NA other downstream 404074 26479611 ~ 26484414 (-)
AMCG00013246 NA other downstream 1096729 25786143 ~ 25791759 (-)
AMCG00013245 NA other downstream 1110765 25776374 ~ 25777723 (-)
AMCG00013241 NA other downstream 1260236 25588487 ~ 25628252 (-)
AMCG00013295 NA other upstream 380811 27273229 ~ 27293073 (-)
G43473 NA other upstream 676346 27568764 ~ 27569151 (-)
G43594 NA other upstream 1175795 28068213 ~ 28072787 (-)
G43684 NA other upstream 1574894 28467312 ~ 28467906 (-)
G43869 NA other upstream 2360978 29253396 ~ 29254316 (-)

Expression


Co-expression Network