AMCG00013283 (LOC108429730)


Basic Information

Item Value
gene id AMCG00013283
gene name LOC108429730
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 27036615 ~ 27058921 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013283
ATGGTGGAGGGTGGGGTGCATGTCAATGATGGTGCCCCCTTAAGTGAGCTGTCCTGGTCCTCCTCCCTGGCTGTGGTGGCTGTTTCCTTCTCTGGGCTCTTCACCTTCATCTTCCTCATGTTGGCCTGCCTGTGCTGCAAGAAGGGGGACATCGGCTTCAAGGAGTTTGAGAACGCTGAGGGCGAGGATTACCAGACCGAATTCTCCACTCTTGGCTCCCCTGTCTCACAGAACGGACCTGAAGTCTATATCCTGCCCCTCACTGAGATTTCGCTTCCTGTGTCAAAGCAGCCTGGAAGATCAGTCCAGCTCCTCAAGTCGACAGACCTGGGCCGACACAGCCTGCTGTACCTGAAGGAGATTGGCCATGGCTGGTTTGGGAAGGTGTTGCTGGGGGAAGTGAATGCAGGCCTCAGCACCACACAGGTGGTGGTGAAGGAGCTGAAGGCCAGCGCCAGTGTGCAGGATCAGATGCAGTTTCTGGAGGAAGCTCAGCCTTACCGCGTTCTCCAGCAccctgcgctcctccagtgcctgGCCCAGTGCTCTGAAGTCACACCGTACCTGCTTGTCATGGAGTTCTGCCCCCTGGGAGATCTGAAAGGTTACCTTCGGAGCTGTCGGGCTGCCGACTCCATAACCCCCGGCCCTTTGACCCTTCAGCGAATGGCGTGTGAGATTGCCTCTGGCCTGCTGCACCTGCACAAACACAGCTACGTCCACAGTGACCTGGCCTTGAGGAACTGTTTGCTGACTGCGGAAGTGACAGTGAAGATAGGAGACTATGGGCTCTCCcataacaaatacaaaGATGATTATTTTGTGACATCGGATCAGATATGGGTACCTCTGCGCTGGATCGCCCCAGAACTCATCGATGAGGTTCATGGGAACTTGCTAGTGGTAGACCAGACAAAGCCCAGCAACATCTGgTCCCTGGGAGTGATGATCTGGGAGCTGTTTGAGTTGGGGAACCAGCCCTATCGTCACTACTCTGACAGACAGGTGCTCACTTATGCTGTAAAGGAGCAACAGCTGAAGCTGCCCAAACCTCTGCTCAAAGTATGAAGTGATGCAGTTCTGCTGGTTGCAGCCTGACCAAAGGCCGAATGCAGAAGAGGTGCACCTGCTTTTGTCCTACCTGTGTGCCAAGGGGGCCAGCGAGGCAGAAGAAGACTTTGAGAAGCGCTGGAACTCCATGAGGCCGAATGCGGGCAACAGCGGCTCTCACAGTGCCAGCGCTTCTGTGGCAGAGCTGccctcatcttcctcctcctcttacCCCCTGCTGGAGCACTTCGCGGTGGGTGAAGGCTTCCACTCGGAGTCGGGGGACGATATTCTGACGGTCACGGAGACCAGCCGGGGACTGAACTTTGAGTACAAGTGGGAGCAGGCTCGGCCAGAGCAGCACTTTCATTCCTCCTCAACCAGCGGTGCCCTGGGTCATGGCAATCCCCAGTACCAGGATATCTATTACCCTCCTGGCAGTGGGGTGAATGGCTGTGGCACTGGGGGGCTAACTCTGGGTGTTTCTCCTTCTTACTATGATGCCAAGCAGCTGCACACCCCAGGTGTGGTACCCGTGCTGAGTGCCCACAGCCCCTCCGTGAGCAGTGAGTATTATATCCGCATTGAGGAGCCAACCGAGTGCAATATAGACCTAGACTATACCATGTGCTCCTACAGCCCAGAGTTTGATGGCAGCAATGGCAGCTTTATCGGAGGAAGTGGGGACTCGGGAAACTGTGTCAACTGCCCTCCTGAAGCCCAGCAAAACTCATATTGGTCTGCAGACGCTCATAAAATCAGTGCCTATGATTCCGATACCAGCCCAGCCATTTCTTTAACCATGGAGCCTCTGCTGGGGCAGGTGTCTAATGCCAGCCCCTTGGAGCCCTGGGAGAGTGGGCAGTACTTCTCTTACaaagtcagagagagagagcagggctACTACTATGAGCATTCTCCCTCAGATGGGGCAGACCACTACCTTCTAGAAGATGCTTCAGATGCCCATCAGGAAAGTTGGGGGTCGCGGAGTCTGCGTCAGGCACTGGGGGAGTTAGAGAATCCTCTGGGCATTTCCCCATCCCTCGGTAGCCCCCAGCAGCTCTACTGTGAACCTTACCTAGAAAGCAGCCATGAGCCCATTCTTAGCAAAACGTCAGCGGGCGAGTGCTACTATGACATGATGGGGTCCATCCGGAAGACCATGACAGGGTCAAACTCCATAAGAAGCGAAATGGAGAGAGAAGAAGCTCGGCTGTTTGTGGGTCGCCAGGACAGTGATTTTGAAGAGGAGGACTTGTTTATGGAGAGACAGACTAATAACTGGACATCCAACAGCTCTGCCAACAATAACAGTGTGAACTCTGCCCGAAGGCCTGGAACGAGTACCAATGATGCTTATGTAGATTTCCATTTCACAATCCCTTCTGCAGATATGGAAGATGCATGGCGAGATAATGGATCTAAAGAAAATCTATCATTGGCCTCCAAACCTTTTACCTACCTAGAGGCCATAGATAAAAGTGGCTGTATTTCCCTGAATAACCAACACAAACTTTTCCCATCAGATGAGtgcaatacttttatttatttgtgccaTGAAGGAGGTGATGGGGTATCACCCCACAGAACCAAACAGACTGTCGAAGAGAATGAGTTCATAGATCCACTATTGGGATCAGTGGTTCGGAATTACCAATTACCtgaatatattaaagaaaaaaaagttgaagtTCAACGAAAGGAAATTAGTGAAACTCCATCATCTTTACCTGTGGGTGCAGCAGTAGGAAGAACAGAGCTGCCAGAAATGTGGCTGAACCATGAACTAGGTAAAAATAATCCCCTCTCAGACCAGACAGAGCAACATATTGACATTGACCTACTGCTTGGTAGAGAGCATTCTGAAAAggagggagaaaaggaaaaagagttTGAACTTACAGATATTTTACAAAAGCCAGTCGCCTGTAGCTCCCCTGTCCAATCTGAAAAGCCACCACTTCCTGATATGGCCCCCAGTACCCAGTCAGAACCAATCTCAGAGAACAGCCAGACCGCAGACAGTGGAGTGGAGAAAGGCTATTCCAGTATCAGTTTTGTCGAGATTGATGACTGCAGTGATGATGATGTAACAGATGTCACCTCAGGTATCTTCACAGATTTCCCAATCGATTACGCTGATATAGGAGATACTGTCCCTGCTTTCAAGTCCCTCCAAAAGCAAGTAGGGACTCCGGACTCCATAGACTCCCTTGACCTTCCCTCCACCACAAGCTCCTGTGAGGCATTCAGTCCTGCTACTTTCCGACCCTCCAGCCAGCCTAAAGCTCTGGACAGTGGCTACGACACTGAAAATAATGAGTCTCCTGAATTTGTATTAAAGGAACCTCATGAACCACGAGACCCCGAGGGCTTTGCACAGACCCTGGAGAAGCCCTCTCTGACTGTGAGTTTAGAACTGGAGGACACACACTCAGAGACAGGGATAGTAACAGAGCCCGGAGCTGATGAAGGGATAGATGCTGCCTTGACCCTGTCAACATCCCACGGTACAGAGCTGGAACTGACATGCCTGAACGAAAAGAATCCGTACAGGGACTCCGCCTATTTCTCGGACTATGATGCAGAGAACGAGAAGTTTTCCCGGGACGAACGGGACGACTTTCAGGAGAAACTAGAGGAAGATGATTTTGGTCAGGAGGCTCAACGGGAGGATCTTGCCAGGTCCACAGAAAAGGAAGAGCTTCAACCACTCATGGTGTCAAATCAGCCACAGGAAGACCTTACAAAGCAACTTGCAGGGACAGAGCCCCTCCAAGGTAATCATTCAGACTGTGAACTAGGTGAGCAGAAGGAAGTCAACAATCTGGACATAGACAAAGATACAACCTTACCCAGAGGAGAGGTCCCAGAACCAGAATTAAGTGTTTCTTCATCCACTCCTGTTATTTCTTCACTTGCTCCATCGCCTCCAGAGCTGGGGGCCTGTTTTACAAAGCAGGCCTCACAGGACGAAGGCCTGGGTCTGGATTCGGAGCACTCTGGGGAGGAGCAGTCTTCCGAGTGCTCTACCTCTACAGTATCTGAAGGGTCGGTACAGCAGGAGCCCTCATCCTCAAGTGATGGAGTACAAGAGTTTAATGGCCCAGAAGATGTGCAGGCTGAGACTTTGGCCTCAGAGGTTGGGGGAGACTCTTCAGATAGCCTCAGTGAGTCAAAGGATGAAAGGGAGGAAGGGGAGTCCACTGCAGCCGTAGTGGACTCCACTGATCTCTTAGAAGAGGATCACCAGCTAGCCCCACAAGAAGAACAAGATGCCCAGGAAGAGGAAGTCCAGGGGTTCCTTGAGCGAACAGAGACTGCTGGGAGTCCCGCgccctcttctcctcctccagaacTCCGGCCAATGGAGGGCAGAGTGTCACCTGCGGACGGGGAGGAAGCGGACGAGGAGGACGGGGATTCGGAAGACAGCGAGGAATCGGACGAGGAGCTCTGCTGCTACAACATCCAGGAGCAGAGCGAGGAGAGTGAGGAGGAGTTCCCTGCAGTGCCCATCGTGGTGAGTGACAGCAGTGAGATGCGGAACCTGCGCAGTCTCCTGAAGATGCCCACCTTGCTCACCGAGTCCTTCTGTGAGGAGCTGGATCGCAAGAAGAAAGCTGTCTCCTTCTTTGATGATGTCACTGTCTACCTTTTTGACCAGGAGAGCCCAACGCGGGAACTGGCAGAACTTAGCTTCCCTCAGGGGGCGGAGTCCAGTGGGCGGGGTTCTGACTGTGCGGAGCCACGCCCCCAGGAGAGGGTCAGCGCCTCGGACGACTCCTCAGATGGAAACGTCTCAGAAGAGAgTGGAGGTTTTGAATGGGACGATGATTTCCCATTGATGCCGGTCTCCTCCTCTATGATGCCCCCCCTGGATACTCCTGTGACCTCCGGCTTGACCACACTGACCCCTGAACCCAAACCGATGGGATCCACAGTGCAGTACTCCCGCTTCACTGTATCACCCTCCAGCGTGTCCCGATTCTCCATCACACACGTGTCTGACTCCGACATCGACTCCGTGGGAGGGAGCAGCgaagatggggagagagagtgaaccACAGATCAAGGGAGGGAGTCAGCATCCCAGGCCCTTTCTGTACAGACTGGCCTCAGCATTGAAGGGGAGGGGGGTCCACCTCGGTCCCGGACCCTGGACTGTGCCTCTTCATGCTCGTGTACACAAGTGATCCCAAGCCCATGTTGTGCTCTCAAAGGGCGGGAGTGTGGGGGTTACAGACACTCAAGAGTGCAAAAGAATGAActgaaagcagaaaacaaacaaaaaaatcagaagagaaaaaatgaaatctatatataattatataaaatatatatatgatgaatatatatatatatatatatatatatatataacttatatGCAGGTAACTTAACGTGTCGCAGAACATTAAAGCTCATttgtaacatattttttttttcctttgacgagagcaacaataacaaaaagaagAGCCACACTGAGTTTACTTTCACAGCTGCACACGATCACTTCATCAGCTGCTGGGGAACATCGCTGTACCTGTCGGGCACACCCAGGCCCGGCACCAGACTGTTACAGCCAGCCATTCAGCTTGGCAGCTATTCAGTTCGACACCCTACGCGCCCGTCTCACTTTAGGAACCGGCAGAGGACACAGCCCTGACCCGGAGATCTTGGGAGAAGTGACATTTCCACAGTGGAAAGATTTGTGTTCTCTCTGATGACTAGGAGGTGCCAAATCTCGCCGGTGTCTCTTCCAGATTTAGTAGTCTTTCTACGGATGATTATTGACTCAAAGGGGAAAGTTTTGTTATTGATAGCTACAGAAATTCTGCAGTCTGACTTAAATTGAGTCCAAAGTCCCAAGTGAGGAACACTCTGATGTTGGAGTAAAAGTAGGTTTGTTTGCCAAATGATGTATTACTTTGCATACCTTTGAGAGAAAATGAACCAGAAGAAGCTGTAGTCAGTTTAAAAGCTTTCCAGTCTGTGCGTATTAGAGGCAGAGAAAGACTTCCAGAAGAAACTGTTCAACATTTGCTGAATGTGGTTCCTTTTTCAGGAACTCTTCTGTGAATCAAATTGGGAATACTtgggtaaaataatatatttggtaATACCACAGTATTTTTTCATAGGTTAAGGATAGTGTGTGGGATTTGATATTCCTGCCTTATTTTTCTCGCCTTAGTTTGAATTGTGTATTCCCAAATGTTGTGATTATTTCCTGTGGTTTCTGAGTAGTCTGTGATTCCCAACACTGGTTgcataaaagaagaagaagaaataccACAAGAAGAGACTCCAGGAATTCAGCTTTCCCCAACCTCGACTGGATCCAGAGTGGTCAGGGTGGAAACGCATTTACAGACACTTTCAATACCTGACCTGTGGGCCACAGGGTGGATTGGGACAGGCAGTATGGACTGGTTCCTGGACTTCACTGTGGCTCCTGAGTCAGGCTTTGCATGGGTTGAATTCAGAACCCGTTCCAGGTTTTTCAATAGGATAGCTTTCTGTCATGTCATTTGCTTAAaggcagaaacaaacaaacaaacaagaaacatctAGTGCCCTCACTGTATCAAGTATCGCTTTTTATCACAATTTGAGTGTTAGTTTCTACATGAGGGAATCAAATGAGTTCATGTCAGAATCAGTGTTTTAGATACGCTGTTCTggcatattgttttaaaaccaatacACTCCACATGTGTGTCACAGACGAGCTGGAATCTCAACATTATTATTcacgtttgtttacttttttaggATCCCCAAACAGACACagtacagattattttattcagaatCAGAGATGATCCCTCTGATACATATGGCCTTCCACCTTTGTCCcaagttaatgtatttttactttaaattgatGTAAACTCTCTCCACTCAGAAggttaaaatgtaaacttttaattcCACAGAGAGAAATGCCACACAGCCTCCACTCCCCTAGTTACACTCAAGTAACGCGGTAACTGTGCCGAGGTTGCTGTTCTAGTATTTATTCTAcccacaaaacaacaatatgtatttctgtttgccttttatgGACTTCATATGATGTAATAGTTTAGGATAGAAGACGTTTAACTGCAGTCTATactatttttgtaaaaaaagaaaaagaaaaaagataagaaaatgatttgaaaatgatATTTATGGAAACAAATATCCAATATTATAAGTTCATTGTTGCCAAAGAGATGTAACAAATTTAAATGGCACACTGGCTTatgggatttttttattgtgtaacaGTATTAAACAGACTTAGTTTAGTTTTCCTCTGCCACCAGTTATGAAAACATACTGATTTAATGTCAGACTGGTACCTAGTAGTGTCACACAATAGGAGTTTGAATTTATTACCTCCATATGACATCACGCAATGCCACATCAAAACTGTGTCCTTACAAAGTGATGCCATAGCAGCAAAGGTTGTGGATAACAACCCTTGTTTGTGCAAAGTAACACTGCTGAAATTTTCAGATTAAAGTAATACTGCATAGAGATAGATAGGGTTTGAATATTATGATTCCCCATGGCCTAAAACAGtagtaaatatgtatgtatttatgtatttatttattcaaagatttatttattttattgttatatgtATTCCTTGGTTTAGgcactgattaaaaacaaagactgctAAATTGAGAAACGTGCTCGACggctgaaatgtaatttgttcgATATCTGTCTTGTCTGTCTGAGAAAGGTGCATTTTCTGAATCTGAAACTCGCTTTCACTGCTGTGGTACAGAGATGTTTTGTGAGTTTAAAAACGACACAAAAAACTTTGCACTACACACTGTGAACTTTTTACTTTTCCAACATTTCAGATATCTACGTCTtctactttttgtttgttttgcattactCCTCCCTAGAAAGCAAAGCGGAATTTGTTCCCATATTCAGGTAATTCCCTAAGATGTATTATGGAGAATTTCTGAATGGCCTCAGCCCCCTTTAGGAgacaagaaaatactttttttaaaccagCATAGTGGGCGTAGAGAAGTGAATGTCTCACACTGATTCATATAAGCATCCAAAGAAGTGAATGTGAGTGGGCTGAGTTGTAGCTATAATAGTCCAGGTGCTGGGCTGTTTTCTGTAAAACGTGTGCTTAGCATGTCGACTGTGCATGCCATATAAACACAGAGAGGCAGTAAGAAATATGGGAATGACGTATACATATGCACTGAACTGCCATTGCATTTTGTTGTGGTGATGTTAATTAAAGCCTGCATATTACACAGGGCAAGGGAGGAAGGGTGGCTGATTTACGCTAGCTTTAATCACAAcctgcttgttttgttttgcatcatCATACCAAGGATGGATGTCTGTTACAAAGAGCTTTGGTCATAGCCTTCTttgtagatttaatttatttaaactgaaaaacgGACATTCATTCTTCATATAAAACCACAAATTAAATCACAACAAACCTGCCTGTAACCCACGCCCCTTGGACAGGGGTCCTCTGTGTGCGCCAAAATCTGTGTATTCTCAGACTCTGTACCCAGGCCTTCTCTTGTTCTCTTCTCTTGCACCCACATTTACTTGACCCTAATGCACCAGAGACATGCATATCTTTTCTCATGTGCTATTTCTCCTGGTTAGCTGTATCACtcctttcctgtttttaatatattgtccAGCACTTTGAAATGCCTTGAAATGAAAGACTATTTAaaacactgcccccccccacc

Function

NR:

description
PREDICTED: serine/threonine-protein kinase LMTK1-like isoform X1

GO:

id name namespace
GO:0016301 kinase activity molecular_function

KEGG:

id description
K17480 AATK, LMTK1; lemur tyrosine kinase 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013283 True 8816 mRNA 0.47 14 27036615 27058921

Neighbor

gene id symbol gene type direction distance location
AMCG00013291 NA coding upstream 37935 26981675 ~ 26998680 (+)
AMCG00013289 cep131 coding upstream 55246 26963688 ~ 26981369 (+)
AMCG00013284 NA coding upstream 73427 26929259 ~ 26963188 (+)
AMCG00013282 NA coding upstream 108035 26924566 ~ 26928580 (+)
AMCG00013285 nploc4 coding upstream 116558 26908791 ~ 26920057 (+)
AMCG00013287 tekt3,LOC107753251 coding downstream 52929 27111850 ~ 27117437 (+)
AMCG00013288 NA coding downstream 71243 27130164 ~ 27140599 (+)
AMCG00013296 NA coding downstream 489884 27548805 ~ 27569295 (+)
AMCG00013299 ndel1,LOC108432229,LOC104940291,LOC107672491 coding downstream 533854 27592775 ~ 27609468 (+)
AMCG00013307 ntn1a,LOC107733905,LOC106564677,LOC107555375,LOC106587088 coding downstream 752772 27811693 ~ 27814163 (+)
G43402 NA non-coding upstream 25964 27010372 ~ 27010651 (+)
G43326 NA non-coding upstream 106362 26872821 ~ 26930253 (+)
G43303 NA non-coding upstream 251054 26784953 ~ 26785561 (+)
G43138 NA non-coding upstream 1192021 25807419 ~ 25844594 (+)
G43085 NA non-coding upstream 1415376 25620937 ~ 25621239 (+)
G43438 NA non-coding downstream 211107 27270028 ~ 27417787 (+)
G43673 NA non-coding downstream 1330768 28389689 ~ 28389960 (+)
G43712 NA non-coding downstream 1679202 28738123 ~ 28738753 (+)
G43810 NA non-coding downstream 2091057 29149978 ~ 29151334 (+)
G43799 NA non-coding downstream 2097778 29156699 ~ 29158493 (+)
AMCG00013281 NA other upstream 113476 26892596 ~ 26923139 (+)
AMCG00013286 pde6g,LOC102221623,LOC103367935,LOC102781464 other upstream 131652 26897509 ~ 26904963 (+)
G43309 NA other upstream 225000 26808164 ~ 26811615 (+)
G43263 NA other upstream 496566 26524826 ~ 26540049 (+)
AMCG00013265 LOC107672452,LOC107711237,LOC107567237,LOC107670476 other upstream 558071 26427946 ~ 26478544 (+)
G43434 NA other downstream 99381 27158302 ~ 27158721 (+)
AMCG00013298 NA other downstream 326744 27385665 ~ 27415286 (+)
G43476 NA other downstream 530218 27589139 ~ 27590818 (+)
AMCG00013310 NA other downstream 869787 27928708 ~ 27935938 (+)
AMCG00013317 NA other downstream 948593 28007514 ~ 28072799 (+)

Expression


Co-expression Network