AMCG00013285 (nploc4)


Basic Information

Item Value
gene id AMCG00013285
gene name nploc4
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 26908791 ~ 26920057 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013285
GTCATTCGAGTACAGTCCCCTGATgggatgaaaaaaatatttgcaactAAGCGAGAAACGGCTgcactgtttttaaagaagGTCGCCAAGGAGTTTGGCTTCAGTACCAACGGCTTCTCCATTTACCTGAACAGAAACAAGACTGGAGAGATTGTCTCCCAGAACAAATCACTCAGTCTCCTCAAGATCAAGCATGGAGACATGCTGTATCTGTTCCCCTCCGGAGTCCCTGGACCCTCTGGTGAAGTTATGGATGTGGTGGCTCCTCtggcatcatcatcatcttcttcatcatcatcatcctcatcatcgCTGTCACGAGGTCAGAGTGGTCCGCAAGTCGTGGAAGATGAGATCGACCAGTACCTGGCCAAGCAGGATGGCAAGATCTACAGAAACCGAGATCCCCAGTTGTGTCGGCATGGGGTCATGGGGAAGTGTGTGCACTGTGTCCCCTTAGAGCCCTTTGATGAGGATTACCTGAACCACCTCGACCCCCCAGTCAAACACATGTCATTCCACGCCTACATTCGCAAGCTCACCGGAGGCGCCGACAAAGGGAAATTCGCGGCCTTGGAGAACATCAGCTGTAAGATTAAATCAGGCTGTGAGGGGCATCCGCCCTGGCCGGAGGGCATCTGTACCAAATGTCAGCCCAGTGCCATCACACTAAACAGACAGAAATACAGACATGTGGATAACATCATGTTTGAGAATCACACCATCGCAGACCGCTTCCTGGACTTCTGGAGGAAGACGGGCAACCAGCGGATGGGCTATCTCTACGGGCGCTACACCGAGCACAAAGACATCCCGCTGGGCATTCGAGCCGAGGTGGCTGCCATCTATGAGCCCCCACAGATCGGTACTCAGAACAGCCTAGAACTGCTGGATGACCCGAAAGCTGCCACGGTGGAAGAGATTGCCGCTAAACTGGGCCTTTGTAAGGTGGGGTGGATATTCACAGACCTAATGTCCGAGGACACCAGAATAGGTACTGTCCGGTACGGCAGACACAAGGACTCCTATTTCCTGAGTGCGGAGGAGTGCATCACGGCCGGAGATTTCCAGAACAGACACCCGAACTCCTGCCGCCTTTCTCCCGACGGCCATTTCGGCTCCAAGTATGTCACCGTGCTGGCAACAGGTGGCCCTGATAACCAAGTCCACTTTGAGGGGTACCAGGTGTCCAATCAGTGCATGGCGTTGGTACGAGACGAGTGTCTCTTGCCGTGCCGCGACGCCCCAGAGCTGGGCTACGCCAAGGAGTCCAGCACCGAGCAGTACGTACCGGACGTCTTCTACAAGGACAAAGATAAATTTGGCAACGACATTACGTATTTAGCACGGCCGTTACCTGTGGAGTACCTGATCATCGATATCACCACCACCTTCCCTAAGGACCCAGTTTACACATTCACATCGACGCACCGCTTCCCGATCGAGAACCGTGACGTGCTAGGAGAGACACAGGATTTCCACAGTCTAGCAACGTATCTCTCCCAGTGCACCTCCACTGTGTTCCTCAACATCGTGTCTGATTTCCATCTCCTGCTCTTCCTGGTCACCAACGAGGTCATGCCCCTCAGGGACAGTATCGGGCTCCTGTTAGATGCAGTGAAGACCTCCAATGAGGAGCTGGCACAGACCTGGAAGAAATCGGAGCAGTGGGCAACGATCGAGCAGCTCTGCAGTACAGTGGGTGGGCAGCCCACGGGTCTCCATGACTATGGGGCCATCGGAGGCCCCTCAGCGCCCGcctccacctcctccatgtGGTCCTGCCGCCACTGCACCTTCATGAACCAGCCCGGCACCGAGCTCTGCGAGATGTGCAGCCTGCCCCGCAGTTAG

Function

symbol description
nploc4 Predicted to enable ubiquitin binding activity and ubiquitin protein ligase binding activity. Predicted to be involved in ubiquitin-dependent protein catabolic process. Predicted to be active in nucleus. Orthologous to human NPLOC4 (NPL4 homolog, ubiquitin recognition factor).

NR:

description
PREDICTED: nuclear protein localization protein 4 homolog

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K14015 NPLOC4, NPL4; nuclear protein localization protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013285 True 1854 mRNA 0.55 16 26908791 26920057

Neighbor

gene id symbol gene type direction distance location
AMCG00013290 NA coding upstream 37888 26862758 ~ 26870903 (+)
AMCG00013275 NA coding upstream 52155 26854424 ~ 26856636 (+)
AMCG00013273 kcnj2,LOC104928150,LOC107597836,LOC107704237 coding upstream 169957 26737554 ~ 26738834 (+)
AMCG00013274 NA coding upstream 182352 26725234 ~ 26726439 (+)
AMCG00013267 exoc7 coding upstream 299928 26588755 ~ 26608863 (+)
AMCG00013282 NA coding downstream 4509 26924566 ~ 26928580 (+)
AMCG00013284 NA coding downstream 9202 26929259 ~ 26963188 (+)
AMCG00013289 cep131 coding downstream 43631 26963688 ~ 26981369 (+)
AMCG00013291 NA coding downstream 61618 26981675 ~ 26998680 (+)
AMCG00013283 LOC108429730 coding downstream 116558 27036615 ~ 27058921 (+)
G43303 NA non-coding upstream 123230 26784953 ~ 26785561 (+)
G43138 NA non-coding upstream 1064197 25807419 ~ 25844594 (+)
G43085 NA non-coding upstream 1287552 25620937 ~ 25621239 (+)
G43084 NA non-coding upstream 1288786 25619610 ~ 25620005 (+)
G43082 NA non-coding upstream 1304553 25603998 ~ 25604238 (+)
G43402 NA non-coding downstream 90315 27010372 ~ 27010651 (+)
G43438 NA non-coding downstream 349971 27270028 ~ 27417787 (+)
G43673 NA non-coding downstream 1469632 28389689 ~ 28389960 (+)
G43712 NA non-coding downstream 1818066 28738123 ~ 28738753 (+)
G43810 NA non-coding downstream 2229921 29149978 ~ 29151334 (+)
AMCG00013286 pde6g,LOC102221623,LOC103367935,LOC102781464 other upstream 3828 26897509 ~ 26904963 (+)
G43309 NA other upstream 97176 26808164 ~ 26811615 (+)
G43263 NA other upstream 368742 26524826 ~ 26540049 (+)
AMCG00013265 LOC107672452,LOC107711237,LOC107567237,LOC107670476 other upstream 430247 26427946 ~ 26478544 (+)
AMCG00013257 LOC106612075,LOC107560953 other upstream 512086 26367795 ~ 26396705 (+)
G43434 NA other downstream 238245 27158302 ~ 27158721 (+)
AMCG00013298 NA other downstream 465608 27385665 ~ 27415286 (+)
G43476 NA other downstream 669082 27589139 ~ 27590818 (+)
AMCG00013310 NA other downstream 1008651 27928708 ~ 27935938 (+)
AMCG00013317 NA other downstream 1087457 28007514 ~ 28072799 (+)

Expression


Co-expression Network