AMCG00013287 (tekt3,LOC107753251)


Basic Information

Item Value
gene id AMCG00013287
gene name tekt3,LOC107753251
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 27111850 ~ 27117437 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013287
ATGGAACTGATTGGGTCCACCCAGACTGCTACTTACGCCCGTCCCAGAACAGGCCATTTTCTCCCCGCTATATCCACCATGGCCTCCAGTTATAAAAACCATTACCCTCACTTTGCCCTTGTCCAGAGTGCCAACCAGCCCTGGAGATCCAACACTTTCTACCGAACAGTCAGCACCGTTCCCACTCTGGCCTCTATCTCACGGACTTCCCCGGACCTCATTAAAGCCAAAATGAACTTCTACCCCTCGAACCGCACAGCGCTCGTCACTCGCTACACCCCGGAGGACTGGTACAAGTCCAACCAGAGCAACTACAGGGAATCGGAGTCCTCCCGGCACAGTGCGGAGAGGCTGCGCAGGGACACGGCCCGCCTGATCCAGGACAAAGAGCAGCTGACCAGGAGGAGCCAGGAGACCACCAACAAGAACATCGGGGAACGCATTAACGACATCGCCTTCTGGAGATCCGAGCTCAACCACGAGATTGAGAACATGGTCGGAGAGATCAGTATGCTGACTGACGTGAAGAAAAGGCTGGAGAGGGCGCTGGCAGAGACGGAAGGCCCCCTACAGGTGGCCCAGGAGTGCCTGTACCACCGGGAGAAGAGAATGTCTATTGATCTGGTCCATGATGAAGTGGAAAAAGATTTACTTAAGGAGGTTGAGGTCATCAAGTCCTGCCAGGAAAGAATGAGGCGTCACCTGGACAGGGCCAACGCCCAGCTTGCGTCCAACAGAGCAGCCCAGCACGAGCTGGAAAGAGACATCAATGACAAGGTGACGGCCCACCGGATTGATGACAGATGTCACCAACTCAGAAATACCTCCGATGGCATCAGTTTCTACAGAGGGGTGGAGAGAATCGACCCCTCACTCTCGATCCCCGATTCCTGGGCCAAGTTTACGGATGACAACATCCTCCGGTCCCAGAGTGAGCGTGCGGCGTCTGCCAAGCTGCGGGATGAAATAGAGATCCTCCTCAGCAGCACCTCAAACGAGATGTGGAACCAGTTCAACTCTGTGAACGTGGCTTTTACCAACCGCATGTCAGAGACCGCCGATGCCAAGAACAACCTGCAAGCGCACTTGGCTAAGACCCTGCAGGAGATCTTTCAGACAGAGATGCTCATCGAGGCCTTAAAGAAGTCCATCAGGGATAAAGAGAGTCCCCTGAAGGTGGCCCAGACCCGACTGGAGGAGCGAACCAGGAGGCCCAATGTGGAGCTGTGCCGTGACAACCCGCACCACCGGCTGGTGACTGAGGTCCGGGAGATCGAGGACACCGTGCAGAAGCTGAAGGAGCGGCTGCGCGACGCCGAGCACACGCTGCAGACTCTGGTCCACACCAAGGTGTCCCTGGAGCACGACCTGTCGGTGAAGGCCAACTCGCTGTTCATCGACCAGGAGAAGTGCATGGGCATGCGCAAAAGTTTCCCCAGCACGCCCCGCCTGGTGGGGTACACATAA

Function

symbol description
tekt3 Acts upstream of or within cilium assembly. Predicted to be located in motile cilium. Predicted to be active in microtubule cytoskeleton and sperm flagellum. Is expressed in neuromast; neuromast hair cell; and otic sensory epithelium. Orthologous to several human genes including TEKT3 (tektin 3).

NR:

description
PREDICTED: tektin-3

GO:

id name namespace
GO:0000226 microtubule cytoskeleton organization biological_process
GO:0005874 microtubule cellular_component

KEGG:

id description
K18630 TEKT3; tektin-3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013287 True 1467 mRNA 0.57 7 27111850 27117437

Neighbor

gene id symbol gene type direction distance location
AMCG00013283 LOC108429730 coding upstream 52929 27036615 ~ 27058921 (+)
AMCG00013291 NA coding upstream 113170 26981675 ~ 26998680 (+)
AMCG00013289 cep131 coding upstream 130481 26963688 ~ 26981369 (+)
AMCG00013284 NA coding upstream 148662 26929259 ~ 26963188 (+)
AMCG00013282 NA coding upstream 183270 26924566 ~ 26928580 (+)
AMCG00013288 NA coding downstream 12727 27130164 ~ 27140599 (+)
AMCG00013296 NA coding downstream 431368 27548805 ~ 27569295 (+)
AMCG00013299 ndel1,LOC108432229,LOC104940291,LOC107672491 coding downstream 475338 27592775 ~ 27609468 (+)
AMCG00013307 ntn1a,LOC107733905,LOC106564677,LOC107555375,LOC106587088 coding downstream 694256 27811693 ~ 27814163 (+)
AMCG00013308 LOC107555375,LOC107733905,LOC107704007,LOC105903456,LOC105012279 coding downstream 757056 27874493 ~ 27875484 (+)
G43402 NA non-coding upstream 101199 27010372 ~ 27010651 (+)
G43326 NA non-coding upstream 181597 26872821 ~ 26930253 (+)
G43303 NA non-coding upstream 326289 26784953 ~ 26785561 (+)
G43138 NA non-coding upstream 1267256 25807419 ~ 25844594 (+)
G43085 NA non-coding upstream 1490611 25620937 ~ 25621239 (+)
G43438 NA non-coding downstream 152591 27270028 ~ 27417787 (+)
G43673 NA non-coding downstream 1272252 28389689 ~ 28389960 (+)
G43712 NA non-coding downstream 1620686 28738123 ~ 28738753 (+)
G43810 NA non-coding downstream 2032541 29149978 ~ 29151334 (+)
G43799 NA non-coding downstream 2039262 29156699 ~ 29158493 (+)
AMCG00013281 NA other upstream 188711 26892596 ~ 26923139 (+)
AMCG00013286 pde6g,LOC102221623,LOC103367935,LOC102781464 other upstream 206887 26897509 ~ 26904963 (+)
G43309 NA other upstream 300235 26808164 ~ 26811615 (+)
G43263 NA other upstream 571801 26524826 ~ 26540049 (+)
AMCG00013265 LOC107672452,LOC107711237,LOC107567237,LOC107670476 other upstream 633306 26427946 ~ 26478544 (+)
G43434 NA other downstream 40865 27158302 ~ 27158721 (+)
AMCG00013298 NA other downstream 268228 27385665 ~ 27415286 (+)
G43476 NA other downstream 471702 27589139 ~ 27590818 (+)
AMCG00013310 NA other downstream 811271 27928708 ~ 27935938 (+)
AMCG00013317 NA other downstream 890077 28007514 ~ 28072799 (+)

Expression


Co-expression Network