AMCG00013288


Basic Information

Item Value
gene id AMCG00013288
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 27130164 ~ 27140599 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013288
AGTAAATCTGTCCTTTGTGTCGTCCTGCAGGCCTGGGTAGTCCATGGAAGCACCACCTCAGATCTCTGGATAAACTGCACTTCAGCCAATGGAGCCAGTCACTGTGATTCGGCTCACACAGGAGAGTGGATCCAGGCGGTGCAGGCCCTGATGATCCTCTCCATCATCTTCAGCGTCCTGTCCTTGTTCCTGTTCTTCTGCCAGCTCTTCACCCTCCAAAAAGGCGGACGGTTCTTCCTCACCGGAATCTTCCAGATCTTCGCAAGTCTCTTTGTGATGAGTGGGGCGATCATTTACACCGTGCAAAGCTCGCTATGGGTGGCGGCAGAAGCGAGCTACGGCTTTGCCTACTACCTGGCATGGGTGTCATTCCCCCTGGCACTAATCAGTGGATTAATCTATGTTATTTTGAGAAAACGTGAATAAGTCCTCCTCCGAAAGCACCGCGACATCAGTACCACAGCGTCCGTAGACAAATTGAAACTGatacaagaggaaaaaaataataataaaacaaatactgttatAATTTGAAGATGTATATAGTATCTATGGTTTAAAACCTATTTATAACACTttttacatacatgtacatagAATTGTGTTGCTTTGTTGACAATGATTCTCTTTTGAGCTTTGTTAAGCTAATGAAGTGCCTATGGAAACTTGTGTAATGGTGAATTAACCACCTGTTTGcattttggttgttgtttttttctgtttcaaccaaacagacaaaaaaaccaaccaaaaaataaataaacaaaaacataaattaaatcagatttattatcagtattttaaCCAAAGTGCATGTATACATTAGACGTCTATAGTGaatttgttttaactgtgctCGTTCAGAAAAAGGAGAGACAATACTGCTAgaataaacaattttaaaaatagctcgttgacataatttgtttgtttttttctgtatgtgatgataaaccaaaaaacaaaatgtttttttttttgttgtccaAAAAATGGTGCTATTTATTTACCATTCCTTTTATTGATATACATTTAGCCCTATCTCAAGAATCAATTAACATGATTTAAAGTGAAATacctaaaatataatttacttcaATGTCATGTACTTGTTCCTAACTGCTTCTGTACATAGAGGATTTTACTAaagcttttttccctttttttaataaaagcatttaaagaaaaacaatgtaatggcTTGACGTGTTAGTGAAGTGAAGagtttgggggggtggggcgATATAACCACTCCCTATTCCTTTattgacattaaaatataacgGTATCAGGTCTTCAATGCAAATTATAATTTCCTCTGTGTCAACAGCAGTGTGATCTAGTAGAATGTGAGTTTAATTAGGAGAAGAGACTTCATTagtagttgttttttaaatgtgtgttataaTGTGCTTGACTGAAGTTCTACATCCACTTTCGTTTGGTTGGGATGGTTTTGTGTCGGGGGATTCAGCAGAGGATTGACTTGCTTTTTTTTCATGAGAGcatgtatttctgtgtttaagTTGTCCATAAAATCACTGAGATACCAGCCTGCTGCCAGGTTGTGTACCTCCGACTGGGGCATTATAATGGTTTGATGCTTTTtggcagtgtgttttttttactgtgtaGAAGGAATTGCATGAGAGGGTAAGATCCACACCAGGGTGATCCGTCTCAAAGAGGCTGGACAATAGCTGTGCCAAGCATAGGTGGGAGTGCTTGAGAGAAATAGACACTGCTTTTTATTGGTCCTGGTGGATAAGTGTTTTCTTATACCTAAAGCAGGTGAAGGGAATCTCTAGCAAACTAAAGGATGTTGTTCCTGCAGTTGTTAGCAGCTGGTACCTTCGTTCCCCCGCCCCACCTCTGACAGACCGTGCCTGTGAGCATCTTTATTCTGCCTTGTCCAAGCAGTGGGAAGGAGGGGGTTGTTGAACTGCTAAACCTACACTATGAAGGACCTGTTCATGAGTCTAATAGTACTGTAATCTCAGTGAGTGAGCCACCCATTGGAAAGGCATGTAACTATAGAGGTGCACATGTTTTTTTAGAGCAGAGGGAAACCAaattattcattaaaacaatgagCTCTGAGCTTCAATGGTCCAAGAGACTGTATCCTTGTGTAGGTTTCAATACATGTCAGGTCAGTTCTTAGCCTTCCTGGTTTATACAGATGGAATTACAAATTTTTCAATCAAAAACAGAACATACCTCCTATTGACAGGGGACTTACAGGGAAGATACATGGCTGGACTCCTGTCATGAGTGTTCTGTGTGGGATTTAATATTACTTCATATAGTAAAGTACTGGATTTCCAAGCGTAGgtaaaactaataaaatggTAGGCTggcaatatatacacacaaagatTTACAAATTGGAGTCAGTGTACAACCTGCTTTGTGACTTCTCCATAACACAGAGCTACTTCACAGATTTGAAATAACGATTCTGTGTGGCCAAATGTATCCTTTCTATATGATAATACCAAATACTAAATGTGGCTTTTGCTAAATCTTCTTTCTGATTTGATTGTCTCTGTATTTAGCCTGTTTGTTAAAAGACGTGTAATGTTACTTGACTGTACTACATATTGCGTGTATTGTGCAAATTAATTGCCATATGCTCTCTGGTACCATGTTGgaagcaaaatgaaaagcattcaattaaaaacaagagaaatgtatgtatgtatgtatgtatatgtaatcaTATCAATGcttgtaatttaattgaattactgGGGGAATGGGGATTCCAACACGGCCCTGCAGTTAGATATTTTGTTCATAGTTTTctgattgtttcatttttttgtttttttctaggCAGCTACAATACTGTAGAAAATGTAAGTCACTTAAATTACCCAAACTTTTAAGTATTTCAGTTTGGTCGGCCGCCTTGTCACTTTCAAAATGCCAAAGATGCATTGGCCTCTTCATGCCAAAGCTGAGATTCACATTACATGCGCGGTGTCACATACCCCGTGATCTCACAGTCAGTGCATTTGTTGTATGCGGGTTGTATTTCTCTCGGCAAGTGCCAGTAATACACAACATCATGTGGGAATGGAGAGACTGACAGAGATTGTAGAACTGGTGGCCTTTCTCTCTACCATTCATAGAATTGTGTATTACAGGTATAACTGGCATGAGAATGAATACATAAGCATGTTGAACCTCTGACATATGAATCTACTTTGGAAATAAGTTGAAATCATGTtagaaatattgaattaaacCCACCAATGACCCAATGCTCTTTTGTGGGAACAAACgatgacttacaaaatatgtatatgcacAACAGAAAGGGCTGATCTTGATATGAATTTAAATGCCTTTCCCGTCAATTGGGATTCttgtttgaaaacaaagaacaaactgAAACTATGCTGTACATGCATATACCTACAGTGTGTTCAACAAATGAGTCTTCAGGTGGTTAATTGGGTCCACAAACTTATTGCTTATTCTGCCCTCATCGATAATTCTGTATACATTGTGCTTCTGTGATTGACTGAACCATTGTCATCCTATGTAAGAGAGCAGAATACACCCATTTCTGTTTAAAGACTGAATGCTTCCAGGGGGAAGAGGGAAATCAaattagaattattttattttgcaatgttaCCAGAATAACTAAAGATGTGTGGAATACTTCTCTTTATCCAAACGAGTAAAAACATTAACTCATCCCCTTTTCTGTAACTTGACGTGTAATGTTTGTAACTGaccattatgttttttgttgcatGCTAGCCTGTTACTGTCTGTGGCTGAGAAATGACAGGAGGTCAGTCTGAGTGGAACTAAGGTCTCTGATGAAGCCTGACACTCTATAAACCTGGCAAGATGGCGTGGATACAGCTGGAGTAACTAAAATAGAAATATACTTgacctgttttgtgtttttacatttaaaagcaattaaaattcaataaataaaacattgctca

Function

GO: NA

KEGG:

id description
K19289 PMP22; peripheral myelin protein 22

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013288 True 3974 mRNA 0.38 3 27130164 27140599

Neighbor

gene id symbol gene type direction distance location
AMCG00013287 tekt3,LOC107753251 coding upstream 12727 27111850 ~ 27117437 (+)
AMCG00013283 LOC108429730 coding upstream 71243 27036615 ~ 27058921 (+)
AMCG00013291 NA coding upstream 131484 26981675 ~ 26998680 (+)
AMCG00013289 cep131 coding upstream 148795 26963688 ~ 26981369 (+)
AMCG00013284 NA coding upstream 166976 26929259 ~ 26963188 (+)
AMCG00013296 NA coding downstream 408206 27548805 ~ 27569295 (+)
AMCG00013299 ndel1,LOC108432229,LOC104940291,LOC107672491 coding downstream 452176 27592775 ~ 27609468 (+)
AMCG00013307 ntn1a,LOC107733905,LOC106564677,LOC107555375,LOC106587088 coding downstream 671094 27811693 ~ 27814163 (+)
AMCG00013308 LOC107555375,LOC107733905,LOC107704007,LOC105903456,LOC105012279 coding downstream 733894 27874493 ~ 27875484 (+)
AMCG00013311 NA coding downstream 795814 27936413 ~ 27946835 (+)
G43402 NA non-coding upstream 119513 27010372 ~ 27010651 (+)
G43326 NA non-coding upstream 199911 26872821 ~ 26930253 (+)
G43303 NA non-coding upstream 344603 26784953 ~ 26785561 (+)
G43138 NA non-coding upstream 1285570 25807419 ~ 25844594 (+)
G43085 NA non-coding upstream 1508925 25620937 ~ 25621239 (+)
G43438 NA non-coding downstream 129429 27270028 ~ 27417787 (+)
G43673 NA non-coding downstream 1249090 28389689 ~ 28389960 (+)
G43712 NA non-coding downstream 1597524 28738123 ~ 28738753 (+)
G43810 NA non-coding downstream 2009379 29149978 ~ 29151334 (+)
G43799 NA non-coding downstream 2016100 29156699 ~ 29158493 (+)
AMCG00013281 NA other upstream 207025 26892596 ~ 26923139 (+)
AMCG00013286 pde6g,LOC102221623,LOC103367935,LOC102781464 other upstream 225201 26897509 ~ 26904963 (+)
G43309 NA other upstream 318549 26808164 ~ 26811615 (+)
G43263 NA other upstream 590115 26524826 ~ 26540049 (+)
AMCG00013265 LOC107672452,LOC107711237,LOC107567237,LOC107670476 other upstream 651620 26427946 ~ 26478544 (+)
G43434 NA other downstream 17703 27158302 ~ 27158721 (+)
AMCG00013298 NA other downstream 245066 27385665 ~ 27415286 (+)
G43476 NA other downstream 448540 27589139 ~ 27590818 (+)
AMCG00013310 NA other downstream 788109 27928708 ~ 27935938 (+)
AMCG00013317 NA other downstream 866915 28007514 ~ 28072799 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000136_00261536_00270931 PMP22B, PMP22 coding CI01000136 null 260454 ~ 271519 (-)
eurasian perch (Perca fluviatilis) G210964 NA non-coding NC_053132.1 CM020929.1 8969083 ~ 8971699 (+)
tiger barb (Puntius tetrazona) G33015 NA misc NC_056703.1 CM032072.1 3605186 ~ 4144396 (+)
mexican tetra (Astyanax mexicanus) G36114 NA non-coding NC_035900.1 CM008303.1 13006516 ~ 13011012 (-)