AMCG00013294 (LOC106589628,LOC102791232,LOC102301473,LOC101472949,LOC100695060,LOC101161443)


Basic Information

Item Value
gene id AMCG00013294
gene name LOC106589628,LOC102791232,LOC102301473,LOC101472949,LOC100695060,LOC101161443
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 27299827 ~ 27307855 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013294
ATGATCGAGAAGGAAGATCCTTTCAATCTAACCCCTTTGTCTTCCCCTCCCTGTTTTTGTGTCTCCCTGCAGTACTTTGAGGTCCCGTTTGACTCCAACATGAACCGGACGAAGAACAGGCCGCTGGTGAGGGGCCAGATCAGtcctCTCCACGCAGTGACCTTCGCCGCAGCCTGCGCAGTGCCTGGCATCGCCTTGCTCACCCTGGCGGTCAACCCCCTGACCGGCGCATTGGGGGCCTTTAACATCTTCCTGTACACCTGCTGCTACACCCCCCTGAAGAGGCTGAGCATCTCCAACACCTGGGTGGGTGCCGTGGTGGGAGCCATACCACCCATCATGGGCTGGACTGCGGCCACGGGGTCCCTAGGCCTGGGGGCGTTGCTCATGGGAGGCATCCTCTACTCCTGGCAGTTTCCGCACTTCAACGCGCTCAGCTGGAACCTGCGGGAGGACTACTCCCGGGGCGGCTACCGCATGATGTCCGTCACCCACCCCACGCTGTGCAGGAAGGTGGCGCTGCGACACAGCCTGGCGCTCGGCGGCCTGTCCACCCTGGCACCCGTCGTCGGTGTCACCACCTGGACCTTCCCTCTCATCTCGCTGCCCATCAATCTCTACATCAGCTACCTGGGCTTCCGCTTCTACCAGGACGCCGACCGTGGCAGTGCCCGGAGACTCTTCTTCTGCAGCCTGTGGCACCTGCCCACCCTGCTGCTCCTCATGCTCACCTGCAAGAAGTCGGTCGGGGACAGAGACGGCGAGGCGGCCACGGCGCAGAGTTAG

Function

NR:

description
PREDICTED: protoheme IX farnesyltransferase, mitochondrial

GO:

id name namespace
GO:0048034 heme O biosynthetic process biological_process
GO:0031966 mitochondrial membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008495 protoheme IX farnesyltransferase activity molecular_function

KEGG:

id description
K02257 COX10, ctaB, cyoE; heme o synthase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013294 True 786 mRNA 0.63 4 27299827 27307855

Neighbor

gene id symbol gene type direction distance location
AMCG00013292 NA coding downstream 140487 27145647 ~ 27159340 (-)
AMCG00013280 NA coding downstream 298370 26999574 ~ 27001457 (-)
AMCG00013278 NA coding downstream 392861 26903814 ~ 26906966 (-)
AMCG00013279 NA coding downstream 407409 26888488 ~ 26892418 (-)
AMCG00013276 NA coding downstream 467138 26830584 ~ 26832689 (-)
AMCG00013293 NA coding upstream 28435 27336290 ~ 27339310 (-)
AMCG00013297 NA coding upstream 190820 27498675 ~ 27508068 (-)
AMCG00013300 NA coding upstream 265060 27572915 ~ 27581176 (-)
AMCG00013303 NA coding upstream 282236 27590091 ~ 27590711 (-)
AMCG00013302 myh10,LOC108442176,LOC108272528,LOC107659961 coding upstream 310918 27618773 ~ 27651553 (-)
G43435 NA non-coding downstream 141098 27158301 ~ 27158729 (-)
G43425 NA non-coding downstream 172839 27126780 ~ 27126988 (-)
G43417 NA non-coding downstream 240585 27055552 ~ 27059242 (-)
G43412 NA non-coding downstream 249985 27049568 ~ 27049842 (-)
G43410 NA non-coding downstream 253264 27046361 ~ 27046563 (-)
G43518 NA non-coding upstream 406184 27714039 ~ 27717043 (-)
G43590 NA non-coding upstream 658157 27966012 ~ 27966233 (-)
G43592 LOC105901958,LOC107704008 non-coding upstream 752989 28060844 ~ 28061169 (-)
G43593 NA non-coding upstream 754394 28062249 ~ 28062453 (-)
G43626 NA non-coding upstream 921555 28229410 ~ 28234706 (-)
AMCG00013295 NA other downstream 6754 27273229 ~ 27293073 (-)
AMCG00013264 NA other downstream 742503 26553549 ~ 26557324 (-)
AMCG00013258 NA other downstream 815413 26479611 ~ 26484414 (-)
AMCG00013246 NA other downstream 1508068 25786143 ~ 25791759 (-)
AMCG00013245 NA other downstream 1522104 25776374 ~ 25777723 (-)
G43473 NA other upstream 260909 27568764 ~ 27569151 (-)
G43594 NA other upstream 760358 28068213 ~ 28072787 (-)
G43684 NA other upstream 1159457 28467312 ~ 28467906 (-)
G43869 NA other upstream 1945541 29253396 ~ 29254316 (-)
G44034 ddx5,kpna2,LOC102776273,LOC103469782,LOC108432045,LOC108261381,LOC100304957 other upstream 2618528 29926383 ~ 30028230 (-)

Expression


Co-expression Network